Wall clock time and date at job start Tue Mar 31 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46669 * 2 1 4 4 H 1.08998 * 109.47134 * 54.99875 * 3 2 1 5 5 C 1.53001 * 109.46864 * 174.99585 * 3 2 1 6 6 N 1.46495 * 109.47385 * 295.00046 * 3 2 1 7 7 C 1.46504 * 119.99858 * 300.00019 * 6 3 2 8 8 C 1.52994 * 109.47197 * 95.54709 * 7 6 3 9 9 C 1.34774 * 120.00224 * 120.00234 * 6 3 2 10 10 O 1.21594 * 119.99882 * 354.31474 * 9 6 3 11 11 C 1.47540 * 120.00090 * 174.31804 * 9 6 3 12 12 C 1.39666 * 120.19756 * 305.02942 * 11 9 6 13 13 C 1.37822 * 119.91666 * 180.02562 * 12 11 9 14 14 C 1.38568 * 120.32738 * 359.97438 * 13 12 11 15 15 C 1.38021 * 120.40072 * 0.02562 * 14 13 12 16 16 C 1.38835 * 120.07261 * 359.67561 * 15 14 13 17 17 O 1.35520 * 120.16170 * 180.29430 * 16 15 14 18 18 C 1.34810 * 117.00209 * 354.77218 * 17 16 15 19 19 H 1.08006 * 120.00043 * 5.01760 * 18 17 16 20 20 C 1.38698 * 120.00369 * 185.02462 * 18 17 16 21 21 N 1.31526 * 119.99695 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00357 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47201 * 89.99536 * 22 20 18 24 24 H 1.48499 * 109.47040 * 209.99658 * 22 20 18 25 25 H 1.48496 * 109.47098 * 329.99649 * 22 20 18 26 26 H 1.09005 * 109.46667 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47866 * 299.99838 * 1 2 3 28 28 H 1.09002 * 109.47218 * 60.00029 * 1 2 3 29 29 H 1.09000 * 109.47629 * 240.00648 * 2 1 3 30 30 H 1.08992 * 109.47200 * 119.99889 * 2 1 3 31 31 H 1.09000 * 109.47340 * 299.99856 * 5 3 2 32 32 H 1.08999 * 109.46752 * 60.00695 * 5 3 2 33 33 H 1.09005 * 109.46874 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46924 * 215.54604 * 7 6 3 35 35 H 1.09007 * 109.47000 * 335.54485 * 7 6 3 36 36 H 1.09001 * 109.47098 * 299.99789 * 8 7 6 37 37 H 1.09007 * 109.47328 * 59.99977 * 8 7 6 38 38 H 1.09000 * 109.47257 * 180.02562 * 8 7 6 39 39 H 1.08003 * 120.03628 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.83523 * 179.97438 * 13 12 11 41 41 H 1.08006 * 119.80138 * 180.02562 * 14 13 12 42 42 H 1.08004 * 119.96384 * 179.97438 * 15 14 13 43 43 H 0.96993 * 119.99984 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4445 0.1258 6 7 1.6523 2.0976 -1.2517 7 6 2.1138 1.5591 -2.5337 8 6 1.0373 0.6432 -3.1193 9 6 0.8712 3.1956 -1.2241 10 8 0.4034 3.5824 -0.1705 11 6 0.5837 3.9280 -2.4721 12 6 1.6308 4.3877 -3.2740 13 6 1.3556 5.0718 -4.4384 14 6 0.0440 5.3060 -4.8190 15 6 -1.0010 4.8577 -4.0366 16 6 -0.7429 4.1614 -2.8635 17 8 -1.7676 3.7153 -2.0971 18 6 -3.0124 4.0729 -2.4709 19 1 -3.1642 4.6192 -3.3902 20 6 -4.0983 3.7394 -1.6751 21 7 -3.9135 3.0738 -0.5558 22 14 -5.8232 4.2355 -2.1928 23 1 -6.4189 3.1597 -3.0252 24 1 -6.6606 4.4480 -0.9850 25 1 -5.7612 5.4933 -2.9798 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8531 0.9572 1.0572 32 1 3.9993 0.9055 -0.7160 33 1 3.9280 2.4722 0.1254 34 1 2.3073 2.3801 -3.2241 35 1 3.0307 0.9900 -2.3797 36 1 0.8438 -0.1778 -2.4289 37 1 0.1204 1.2123 -3.2733 38 1 1.3809 0.2422 -4.0729 39 1 2.6548 4.2073 -2.9819 40 1 2.1663 5.4271 -5.0572 41 1 -0.1619 5.8426 -5.7334 42 1 -2.0206 5.0445 -4.3398 43 1 -4.6729 2.8403 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857634239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:48 Heat of formation + Delta-G solvation = -38.849212 kcal Electronic energy + Delta-G solvation = -24687.327618 eV Core-core repulsion = 21312.487029 eV Total energy + Delta-G solvation = -3374.840589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00616 -38.55722 -36.42150 -36.16517 -33.28935 -32.33682 -30.58933 -30.32518 -29.06095 -28.76055 -25.41948 -23.87137 -23.37257 -22.59912 -21.58317 -20.45680 -18.70237 -18.04076 -17.21358 -16.52385 -15.87537 -15.00378 -14.69106 -14.37670 -14.15705 -13.84200 -13.73625 -13.52528 -13.42129 -13.27655 -13.00163 -12.84772 -12.49498 -12.28155 -12.08109 -11.74269 -11.65746 -11.38239 -11.31806 -11.05131 -10.95478 -10.83683 -10.79426 -10.63205 -10.55430 -10.43906 -10.33147 -9.57415 -8.93540 -8.86721 -8.28558 -8.05918 -7.31512 -6.45328 -4.05462 1.84756 2.30088 3.11242 3.13148 3.17713 3.41325 3.61723 3.93714 4.50757 4.89541 5.03977 5.17601 5.24345 5.25294 5.31648 5.39947 5.53387 5.56974 5.62150 5.68825 5.70911 5.75336 5.83874 5.94715 5.98464 6.07957 6.15856 6.19803 6.25112 6.26837 6.34965 6.52073 6.57476 6.59613 6.68350 6.87815 6.95616 7.05170 7.14219 7.26471 7.31116 7.69011 7.92071 8.01746 8.95939 8.98860 9.65155 10.70102 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.006523 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.840619 B = 4291.699217 C = 5563.794419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.135 3.865 4 H 0.099 0.901 5 C -0.159 4.159 6 N -0.609 5.609 7 C 0.104 3.896 8 C -0.176 4.176 9 C 0.579 3.421 10 O -0.520 6.520 11 C -0.210 4.210 12 C -0.045 4.045 13 C -0.223 4.223 14 C -0.057 4.057 15 C -0.235 4.235 16 C 0.186 3.814 17 O -0.150 6.150 18 C -0.399 4.399 19 H 0.093 0.907 20 C 0.044 3.956 21 N -0.843 5.843 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.729 -4.386 -4.680 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.031 3.969 4 H 0.117 0.883 5 C -0.217 4.217 6 N -0.344 5.344 7 C -0.019 4.019 8 C -0.234 4.234 9 C 0.369 3.631 10 O -0.394 6.394 11 C -0.215 4.215 12 C -0.064 4.064 13 C -0.242 4.242 14 C -0.075 4.075 15 C -0.254 4.254 16 C 0.129 3.871 17 O -0.051 6.051 18 C -0.475 4.475 19 H 0.111 0.889 20 C -0.162 4.162 21 N -0.476 5.476 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.283 -4.415 -3.658 12.656 hybrid contribution -0.907 0.220 -0.461 1.041 sum 10.376 -4.195 -4.119 11.926 Atomic orbital electron populations 1.21752 0.94609 1.00742 1.03681 1.21922 0.97288 0.95995 1.01549 1.21026 0.93961 0.93534 0.88341 0.88321 1.22150 0.95803 1.02074 1.01687 1.47868 1.52198 1.28273 1.06082 1.21584 0.96739 0.98157 0.85423 1.22356 1.00383 1.00316 1.00342 1.18172 0.76669 0.79487 0.88793 1.90773 1.49028 1.67320 1.32286 1.18750 0.91616 1.12175 0.98937 1.20649 0.96508 0.95987 0.93217 1.20463 0.96138 1.08165 0.99393 1.20866 0.92556 0.96432 0.97696 1.21135 1.00042 1.06900 0.97316 1.19170 0.87838 0.90349 0.89752 1.83996 1.13414 1.61470 1.46206 1.21378 0.79844 1.38091 1.08179 0.88930 1.25332 0.99590 0.96322 0.95004 1.70075 1.31873 1.34456 1.11193 0.85729 0.80330 0.79124 0.78351 1.19834 1.20165 1.19094 0.93573 0.92492 0.91558 0.91871 0.91734 0.91840 0.92546 0.92432 0.89766 0.91115 0.91984 0.91714 0.92398 0.86733 0.87247 0.87232 0.85135 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.19 37.16 0.34 -2.23 16 2 C -0.13 -1.78 4.91 -26.73 -0.13 -1.91 16 3 C 0.13 2.06 2.63 -67.93 -0.18 1.88 16 4 H 0.10 1.79 6.91 -51.93 -0.36 1.43 16 5 C -0.16 -1.84 9.18 37.16 0.34 -1.50 16 6 N -0.61 -10.44 1.84 -167.32 -0.31 -10.75 16 7 C 0.10 1.45 5.10 -4.04 -0.02 1.43 16 8 C -0.18 -2.56 9.24 37.15 0.34 -2.22 16 9 C 0.58 12.84 6.74 -12.47 -0.08 12.75 16 10 O -0.52 -13.90 16.15 3.49 0.06 -13.85 16 11 C -0.21 -4.55 4.84 -104.81 -0.51 -5.06 16 12 C -0.04 -0.79 7.61 -39.20 -0.30 -1.09 16 13 C -0.22 -3.64 10.02 -39.61 -0.40 -4.04 16 14 C -0.06 -1.00 10.03 -39.54 -0.40 -1.40 16 15 C -0.23 -5.01 9.16 -39.44 -0.36 -5.37 16 16 C 0.19 4.56 6.65 -38.60 -0.26 4.31 16 17 O -0.15 -4.36 8.99 -0.99 -0.01 -4.37 16 18 C -0.40 -11.21 9.49 30.90 0.29 -10.91 16 19 H 0.09 2.38 5.20 -52.48 -0.27 2.10 16 20 C 0.04 1.22 5.49 -17.51 -0.10 1.13 16 21 N -0.84 -25.15 13.67 55.48 0.76 -24.39 16 22 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.34 6.38 -51.93 -0.33 1.01 16 29 H 0.06 0.79 6.15 -51.93 -0.32 0.47 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.57 6.67 -51.93 -0.35 0.22 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.16 4.54 -51.93 -0.24 0.93 16 35 H 0.07 0.78 6.44 -51.92 -0.33 0.45 16 36 H 0.06 0.89 4.89 -51.93 -0.25 0.63 16 37 H 0.06 1.18 8.01 -51.92 -0.42 0.77 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.11 1.68 7.36 -52.48 -0.39 1.30 16 40 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -33.12 343.26 -6.83 -39.94 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.07 Total: 6.91 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.41 Total: -14.24 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.45 Total: -35.14 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.05 Total: -18.22 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.12 -6.83 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857634239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.095 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds