Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46669 * 2 1 4 4 H 1.08998 * 109.47134 * 54.99875 * 3 2 1 5 5 C 1.53001 * 109.46864 * 174.99585 * 3 2 1 6 6 N 1.46495 * 109.47385 * 295.00046 * 3 2 1 7 7 C 1.46504 * 119.99858 * 300.00019 * 6 3 2 8 8 C 1.52994 * 109.47197 * 95.54709 * 7 6 3 9 9 C 1.34774 * 120.00224 * 120.00234 * 6 3 2 10 10 O 1.21594 * 119.99882 * 354.31474 * 9 6 3 11 11 C 1.47540 * 120.00090 * 174.31804 * 9 6 3 12 12 C 1.39666 * 120.19756 * 305.02942 * 11 9 6 13 13 C 1.37822 * 119.91666 * 180.02562 * 12 11 9 14 14 C 1.38568 * 120.32738 * 359.97438 * 13 12 11 15 15 C 1.38021 * 120.40072 * 0.02562 * 14 13 12 16 16 C 1.38835 * 120.07261 * 359.67561 * 15 14 13 17 17 O 1.35520 * 120.16170 * 180.29430 * 16 15 14 18 18 C 1.34810 * 117.00209 * 354.77218 * 17 16 15 19 19 H 1.08006 * 120.00043 * 5.01760 * 18 17 16 20 20 C 1.38698 * 120.00369 * 185.02462 * 18 17 16 21 21 N 1.31526 * 119.99695 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00357 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47201 * 89.99536 * 22 20 18 24 24 H 1.48499 * 109.47040 * 209.99658 * 22 20 18 25 25 H 1.48496 * 109.47098 * 329.99649 * 22 20 18 26 26 H 1.09005 * 109.46667 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47866 * 299.99838 * 1 2 3 28 28 H 1.09002 * 109.47218 * 60.00029 * 1 2 3 29 29 H 1.09000 * 109.47629 * 240.00648 * 2 1 3 30 30 H 1.08992 * 109.47200 * 119.99889 * 2 1 3 31 31 H 1.09000 * 109.47340 * 299.99856 * 5 3 2 32 32 H 1.08999 * 109.46752 * 60.00695 * 5 3 2 33 33 H 1.09005 * 109.46874 * 179.97438 * 5 3 2 34 34 H 1.09001 * 109.46924 * 215.54604 * 7 6 3 35 35 H 1.09007 * 109.47000 * 335.54485 * 7 6 3 36 36 H 1.09001 * 109.47098 * 299.99789 * 8 7 6 37 37 H 1.09007 * 109.47328 * 59.99977 * 8 7 6 38 38 H 1.09000 * 109.47257 * 180.02562 * 8 7 6 39 39 H 1.08003 * 120.03628 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.83523 * 179.97438 * 13 12 11 41 41 H 1.08006 * 119.80138 * 180.02562 * 14 13 12 42 42 H 1.08004 * 119.96384 * 179.97438 * 15 14 13 43 43 H 0.96993 * 119.99984 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4445 0.1258 6 7 1.6523 2.0976 -1.2517 7 6 2.1138 1.5591 -2.5337 8 6 1.0373 0.6432 -3.1193 9 6 0.8712 3.1956 -1.2241 10 8 0.4034 3.5824 -0.1705 11 6 0.5837 3.9280 -2.4721 12 6 1.6308 4.3877 -3.2740 13 6 1.3556 5.0718 -4.4384 14 6 0.0440 5.3060 -4.8190 15 6 -1.0010 4.8577 -4.0366 16 6 -0.7429 4.1614 -2.8635 17 8 -1.7676 3.7153 -2.0971 18 6 -3.0124 4.0729 -2.4709 19 1 -3.1642 4.6192 -3.3902 20 6 -4.0983 3.7394 -1.6751 21 7 -3.9135 3.0738 -0.5558 22 14 -5.8232 4.2355 -2.1928 23 1 -6.4189 3.1597 -3.0252 24 1 -6.6606 4.4480 -0.9850 25 1 -5.7612 5.4933 -2.9798 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8531 0.9572 1.0572 32 1 3.9993 0.9055 -0.7160 33 1 3.9280 2.4722 0.1254 34 1 2.3073 2.3801 -3.2241 35 1 3.0307 0.9900 -2.3797 36 1 0.8438 -0.1778 -2.4289 37 1 0.1204 1.2123 -3.2733 38 1 1.3809 0.2422 -4.0729 39 1 2.6548 4.2073 -2.9819 40 1 2.1663 5.4271 -5.0572 41 1 -0.1619 5.8426 -5.7334 42 1 -2.0206 5.0445 -4.3398 43 1 -4.6729 2.8403 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857634239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = -60.236332 kcal Electronic energy + Delta-G solvation = -24688.255033 eV Core-core repulsion = 21312.487029 eV Total energy + Delta-G solvation = -3375.768004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59014 -40.21061 -38.09678 -37.76898 -34.61140 -34.34221 -31.92761 -31.80165 -30.64769 -30.07678 -27.41950 -25.26422 -24.68315 -23.94069 -23.25564 -21.88331 -20.12310 -19.88773 -18.83239 -18.15888 -17.36035 -16.67460 -16.36662 -15.89551 -15.71698 -15.50375 -15.33218 -14.98598 -14.65693 -14.53737 -14.51439 -14.42506 -14.12559 -13.57286 -13.52262 -13.28355 -13.01518 -12.86970 -12.71807 -12.57612 -12.49141 -12.36087 -12.16077 -12.06291 -11.94590 -11.80009 -11.54543 -11.42390 -10.84251 -10.62891 -9.83621 -9.49411 -9.03988 -8.47703 -6.17893 0.27230 0.70963 1.29997 1.41075 1.48873 1.80225 2.13543 2.18768 2.81851 3.13741 3.44361 3.63664 3.93455 4.08114 4.08505 4.13899 4.16695 4.26751 4.41749 4.46360 4.52121 4.56212 4.61762 4.66355 4.69903 4.82147 4.89963 4.95319 4.97813 4.98708 5.06768 5.07353 5.13468 5.23739 5.28812 5.32666 5.49643 5.52115 5.59512 5.70135 5.84422 5.95644 6.16713 6.50216 6.93702 7.35791 7.76326 8.73895 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014327 B = 0.006523 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.840619 B = 4291.699217 C = 5563.794419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.124 3.876 4 H 0.055 0.945 5 C -0.146 4.146 6 N -0.597 5.597 7 C 0.099 3.901 8 C -0.171 4.171 9 C 0.569 3.431 10 O -0.588 6.588 11 C -0.223 4.223 12 C -0.040 4.040 13 C -0.189 4.189 14 C -0.049 4.049 15 C -0.251 4.251 16 C 0.145 3.855 17 O -0.213 6.213 18 C -0.420 4.420 19 H 0.105 0.895 20 C -0.023 4.023 21 N -0.912 5.912 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.250 1.250 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.061 0.939 37 H 0.013 0.987 38 H 0.091 0.909 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.153 0.847 42 H 0.122 0.878 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.556 -4.536 -7.977 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.021 3.979 4 H 0.074 0.926 5 C -0.204 4.204 6 N -0.329 5.329 7 C -0.022 4.022 8 C -0.229 4.229 9 C 0.359 3.641 10 O -0.468 6.468 11 C -0.228 4.228 12 C -0.058 4.058 13 C -0.208 4.208 14 C -0.067 4.067 15 C -0.270 4.270 16 C 0.092 3.908 17 O -0.118 6.118 18 C -0.496 4.496 19 H 0.123 0.877 20 C -0.221 4.221 21 N -0.549 5.549 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.173 1.173 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.110 0.890 39 H 0.171 0.829 40 H 0.182 0.818 41 H 0.171 0.829 42 H 0.140 0.860 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.203 -4.582 -7.033 17.366 hybrid contribution -1.728 0.304 0.375 1.794 sum 13.475 -4.278 -6.658 15.627 Atomic orbital electron populations 1.21700 0.97911 1.00799 0.99979 1.21900 0.93998 0.95437 1.04239 1.21255 0.96919 0.93514 0.86168 0.92632 1.22061 0.91751 1.02502 1.04077 1.47944 1.50218 1.26484 1.08265 1.21919 0.97915 0.98681 0.83724 1.22310 0.98543 0.99808 1.02215 1.18514 0.76697 0.80755 0.88143 1.90731 1.51907 1.69627 1.34506 1.19142 0.91813 1.12417 0.99379 1.21130 0.97027 0.94808 0.92874 1.21140 0.96985 1.04324 0.98315 1.21371 0.92043 0.95090 0.98194 1.21287 1.01198 1.07405 0.97146 1.19877 0.88268 0.91776 0.90887 1.83987 1.14324 1.64662 1.48788 1.21906 0.80508 1.38343 1.08797 0.87737 1.26690 1.04418 0.96171 0.94822 1.70268 1.33119 1.37963 1.13524 0.84584 0.73882 0.79526 0.78155 1.18424 1.19916 1.17300 0.91491 0.95894 0.95673 0.89204 0.88677 0.89706 0.89689 0.93064 0.89048 0.86447 0.92051 0.96749 0.89039 0.82898 0.81828 0.82920 0.86050 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.19 71.98 0.66 -4.71 16 2 C -0.12 -3.10 4.91 30.60 0.15 -2.95 16 3 C 0.12 3.77 2.63 44.99 0.12 3.89 16 4 H 0.06 2.18 6.91 -2.39 -0.02 2.17 16 5 C -0.15 -2.89 9.18 71.98 0.66 -2.23 16 6 N -0.60 -20.51 1.84 -801.55 -1.47 -21.98 16 7 C 0.10 2.48 5.10 86.38 0.44 2.92 16 8 C -0.17 -4.81 9.24 71.98 0.67 -4.14 16 9 C 0.57 26.68 6.74 86.70 0.58 27.27 16 10 O -0.59 -34.61 16.15 -2.29 -0.04 -34.65 16 11 C -0.22 -9.89 4.84 -19.99 -0.10 -9.99 16 12 C -0.04 -1.28 7.61 22.52 0.17 -1.11 16 13 C -0.19 -5.17 10.02 22.25 0.22 -4.95 16 14 C -0.05 -1.55 10.03 22.30 0.22 -1.32 16 15 C -0.25 -10.86 9.16 22.36 0.20 -10.65 16 16 C 0.15 7.52 6.65 22.91 0.15 7.68 16 17 O -0.21 -13.59 8.99 -18.30 -0.16 -13.75 16 18 C -0.42 -25.55 9.49 67.93 0.64 -24.90 16 19 H 0.11 5.74 5.20 -2.91 -0.02 5.73 16 20 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 21 N -0.91 -59.74 13.67 21.62 0.30 -59.45 16 22 Si 1.02 44.80 29.55 68.60 2.03 46.82 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.02 1.10 6.38 -2.39 -0.02 1.08 16 29 H 0.09 1.92 6.15 -2.39 -0.01 1.91 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.22 6.67 -2.39 -0.02 1.20 16 33 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.09 2.17 4.54 -2.39 -0.01 2.15 16 35 H 0.12 1.92 6.44 -2.38 -0.02 1.91 16 36 H 0.06 1.71 4.89 -2.39 -0.01 1.70 16 37 H 0.01 0.52 8.01 -2.38 -0.02 0.50 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.15 3.70 7.36 -2.91 -0.02 3.68 16 40 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 41 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 43 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -87.83 343.26 6.93 -80.89 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 1.01 Total: 28.21 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 5.27 Total: -26.09 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -1.18 Total: -81.43 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -0.20 Total: -48.40 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -87.83 6.93 -80.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857634239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.658 kcal (2) G-P(sol) polarization free energy of solvation -87.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds