Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 H 1.09006 * 109.47293 * 305.00420 * 3 2 1 5 5 C 1.52993 * 109.47379 * 185.00339 * 3 2 1 6 6 N 1.46505 * 109.47114 * 65.00193 * 3 2 1 7 7 C 1.46500 * 119.99592 * 60.00063 * 6 3 2 8 8 C 1.52999 * 109.47230 * 278.26644 * 7 6 3 9 9 C 1.34778 * 119.99914 * 240.00149 * 6 3 2 10 10 O 1.21596 * 119.99925 * 2.92337 * 9 6 3 11 11 C 1.47527 * 119.99800 * 182.92015 * 9 6 3 12 12 C 1.39666 * 120.19806 * 330.88924 * 11 9 6 13 13 C 1.37833 * 119.92136 * 179.97438 * 12 11 9 14 14 C 1.38574 * 120.32398 * 359.97438 * 13 12 11 15 15 C 1.38034 * 120.39819 * 0.02562 * 14 13 12 16 16 C 1.38832 * 120.07380 * 359.97438 * 15 14 13 17 17 O 1.35514 * 120.16355 * 180.02562 * 16 15 14 18 18 C 1.34818 * 117.00098 * 5.82237 * 17 16 15 19 19 H 1.08011 * 119.99428 * 4.71121 * 18 17 16 20 20 C 1.38697 * 120.00397 * 184.71520 * 18 17 16 21 21 N 1.31515 * 119.99728 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46927 * 90.00260 * 22 20 18 24 24 H 1.48493 * 109.47245 * 209.99942 * 22 20 18 25 25 H 1.48499 * 109.47446 * 330.00404 * 22 20 18 26 26 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46849 * 299.99347 * 1 2 3 28 28 H 1.09001 * 109.47295 * 59.99873 * 1 2 3 29 29 H 1.09007 * 109.47170 * 240.00019 * 2 1 3 30 30 H 1.09001 * 109.47295 * 120.00127 * 2 1 3 31 31 H 1.08998 * 109.47316 * 59.99871 * 5 3 2 32 32 H 1.08997 * 109.47383 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.47437 * 300.00014 * 5 3 2 34 34 H 1.08990 * 109.47604 * 38.27171 * 7 6 3 35 35 H 1.09006 * 109.46653 * 158.27341 * 7 6 3 36 36 H 1.09003 * 109.47453 * 300.00512 * 8 7 6 37 37 H 1.09000 * 109.47279 * 60.00326 * 8 7 6 38 38 H 1.08996 * 109.47491 * 180.02562 * 8 7 6 39 39 H 1.07995 * 120.04108 * 359.97438 * 12 11 9 40 40 H 1.07997 * 119.83732 * 179.97438 * 13 12 11 41 41 H 1.07995 * 119.80519 * 180.27882 * 14 13 12 42 42 H 1.08000 * 119.96265 * 180.02562 * 15 14 13 43 43 H 0.96999 * 120.00069 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6525 2.0975 1.2519 7 6 2.1140 1.5588 2.5337 8 6 1.2132 0.3950 2.9519 9 6 0.8714 3.1955 1.2242 10 8 0.4447 3.6115 0.1643 11 6 0.5342 3.8926 2.4799 12 6 0.4633 3.1825 3.6805 13 6 0.1483 3.8396 4.8504 14 6 -0.0985 5.2031 4.8423 15 6 -0.0321 5.9180 3.6634 16 6 0.2838 5.2728 2.4754 17 8 0.3499 5.9729 1.3170 18 6 0.2175 7.3118 1.4026 19 1 0.1428 7.7863 2.3700 20 6 0.1772 8.0800 0.2485 21 7 0.2686 7.5023 -0.9294 22 14 -0.0070 9.9351 0.3672 23 1 1.3371 10.5623 0.4402 24 1 -0.7239 10.4391 -0.8316 25 1 -0.7805 10.2787 1.5874 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8531 0.9570 -1.0572 32 1 3.9282 2.4719 -0.1253 33 1 3.9995 0.9052 0.7160 34 1 3.1400 1.2055 2.4311 35 1 2.0731 2.3407 3.2921 36 1 0.1871 0.7484 3.0546 37 1 1.2540 -0.3868 2.1935 38 1 1.5563 -0.0054 3.9058 39 1 0.6552 2.1197 3.6921 40 1 0.0935 3.2891 5.7779 41 1 -0.3402 5.7104 5.7646 42 1 -0.2254 6.9806 3.6652 43 1 0.2401 8.0394 -1.7366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857634240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = -5.793040 kcal Electronic energy + Delta-G solvation = -24483.371472 eV Core-core repulsion = 21109.964306 eV Total energy + Delta-G solvation = -3373.407166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20007 -38.54565 -36.46320 -36.25253 -33.57516 -32.32198 -31.06914 -30.05245 -29.21306 -28.67949 -25.39366 -23.92163 -23.34948 -22.66244 -21.68878 -20.44299 -18.97421 -18.06963 -17.10176 -16.57017 -15.77107 -15.00843 -14.84837 -14.46224 -14.25160 -14.04010 -13.96883 -13.62725 -13.41669 -13.28710 -12.99525 -12.55180 -12.33272 -12.25050 -12.12582 -11.77794 -11.68108 -11.51523 -11.46674 -11.13682 -11.00139 -10.90762 -10.83768 -10.62632 -10.50175 -10.27935 -10.20407 -9.54432 -8.85993 -8.80312 -8.15951 -8.14717 -7.27928 -6.43125 -4.03221 1.78963 2.33308 3.12653 3.13606 3.18417 3.47777 3.71324 3.94897 4.58350 4.83345 5.01201 5.11634 5.16345 5.19493 5.22990 5.29911 5.40979 5.51777 5.57198 5.62494 5.63961 5.71369 5.76247 5.87074 5.89800 5.95266 6.01417 6.06364 6.12735 6.19219 6.29974 6.35967 6.39439 6.57119 6.60810 6.72523 6.96084 7.08143 7.13258 7.28929 7.31621 7.73043 7.93037 8.05558 8.97195 9.09131 9.69220 10.71424 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.005537 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.724811 B = 5055.467892 C = 6224.538228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.100 0.900 5 C -0.160 4.160 6 N -0.611 5.611 7 C 0.082 3.918 8 C -0.195 4.195 9 C 0.564 3.436 10 O -0.508 6.508 11 C -0.223 4.223 12 C -0.073 4.073 13 C -0.232 4.232 14 C -0.053 4.053 15 C -0.239 4.239 16 C 0.190 3.810 17 O -0.135 6.135 18 C -0.402 4.402 19 H 0.093 0.907 20 C 0.044 3.956 21 N -0.837 5.837 22 Si 0.941 3.059 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.148 0.852 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -12.766 7.260 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.118 0.882 5 C -0.218 4.218 6 N -0.347 5.347 7 C -0.041 4.041 8 C -0.253 4.253 9 C 0.355 3.645 10 O -0.382 6.382 11 C -0.228 4.228 12 C -0.091 4.091 13 C -0.251 4.251 14 C -0.071 4.071 15 C -0.258 4.258 16 C 0.131 3.869 17 O -0.034 6.034 18 C -0.478 4.478 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.469 5.469 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.201 1.201 25 H -0.191 1.191 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.165 0.835 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.757 -12.487 6.112 14.401 hybrid contribution -0.102 0.974 0.279 1.018 sum 3.654 -11.513 6.391 13.666 Atomic orbital electron populations 1.21775 0.95485 1.00688 1.02899 1.22129 0.96766 0.96634 1.02064 1.20979 0.94359 0.92887 0.88475 0.88158 1.22125 0.95744 1.02499 1.01464 1.47789 1.52247 1.28827 1.05806 1.22120 0.97551 0.97260 0.87176 1.22776 1.00996 0.99521 1.01969 1.18262 0.77989 0.79074 0.89220 1.90864 1.51710 1.64089 1.31557 1.18805 1.18188 0.92147 0.93623 1.21926 0.95299 1.00586 0.91287 1.20515 1.12282 0.94840 0.97475 1.20910 0.95430 0.94083 0.96717 1.21143 1.11077 1.01187 0.92407 1.19265 0.90536 0.90153 0.86952 1.84121 1.74157 1.20061 1.25014 1.21450 1.53025 0.78575 0.94748 0.88943 1.25369 0.96260 1.00542 0.94174 1.70112 1.43024 1.36276 0.97501 0.85725 0.78778 0.80523 0.78459 1.19790 1.20148 1.19086 0.93366 0.92238 0.92567 0.91574 0.90910 0.91913 0.92082 0.92660 0.91377 0.87653 0.91462 0.90507 0.91825 0.83526 0.87341 0.87320 0.85163 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.20 37.16 0.34 -1.63 16 2 C -0.14 -1.63 4.86 -26.73 -0.13 -1.76 16 3 C 0.14 2.06 2.64 -67.93 -0.18 1.88 16 4 H 0.10 1.85 6.90 -51.93 -0.36 1.49 16 5 C -0.16 -2.04 9.15 37.15 0.34 -1.70 16 6 N -0.61 -10.28 1.90 -167.33 -0.32 -10.60 16 7 C 0.08 1.06 5.23 -4.04 -0.02 1.04 16 8 C -0.20 -2.05 7.67 37.16 0.29 -1.77 16 9 C 0.56 12.64 7.38 -12.47 -0.09 12.54 16 10 O -0.51 -13.95 15.05 -14.05 -0.21 -14.16 16 11 C -0.22 -4.94 5.55 -104.81 -0.58 -5.52 16 12 C -0.07 -1.28 7.42 -39.20 -0.29 -1.57 16 13 C -0.23 -3.85 10.03 -39.61 -0.40 -4.25 16 14 C -0.05 -0.95 10.03 -39.53 -0.40 -1.35 16 15 C -0.24 -5.23 9.13 -39.44 -0.36 -5.59 16 16 C 0.19 4.79 6.63 -38.60 -0.26 4.53 16 17 O -0.13 -4.02 8.24 -18.53 -0.15 -4.17 16 18 C -0.40 -11.51 9.45 30.90 0.29 -11.22 16 19 H 0.09 2.41 5.29 -52.48 -0.28 2.13 16 20 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 21 N -0.84 -25.48 13.67 55.48 0.76 -24.72 16 22 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.87 6.39 -51.93 -0.33 0.54 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.75 5.06 -51.93 -0.26 0.49 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.60 6.73 -51.93 -0.35 0.25 16 34 H 0.07 0.75 6.48 -51.93 -0.34 0.42 16 35 H 0.11 1.48 4.35 -51.93 -0.23 1.25 16 36 H 0.07 0.80 6.45 -51.93 -0.33 0.46 16 37 H 0.08 0.76 4.13 -51.93 -0.21 0.55 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.15 2.08 2.29 -52.49 -0.12 1.96 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -34.19 332.64 -7.10 -41.29 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.63 Total: 6.85 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.54 Total: -15.22 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.44 Total: -35.33 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.36 Total: -18.33 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.19 -7.10 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857634240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.497 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds