Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 H 1.09006 * 109.47293 * 305.00420 * 3 2 1 5 5 C 1.52993 * 109.47379 * 185.00339 * 3 2 1 6 6 N 1.46505 * 109.47114 * 65.00193 * 3 2 1 7 7 C 1.46500 * 119.99592 * 60.00063 * 6 3 2 8 8 C 1.52999 * 109.47230 * 278.26644 * 7 6 3 9 9 C 1.34778 * 119.99914 * 240.00149 * 6 3 2 10 10 O 1.21596 * 119.99925 * 2.92337 * 9 6 3 11 11 C 1.47527 * 119.99800 * 182.92015 * 9 6 3 12 12 C 1.39666 * 120.19806 * 330.88924 * 11 9 6 13 13 C 1.37833 * 119.92136 * 179.97438 * 12 11 9 14 14 C 1.38574 * 120.32398 * 359.97438 * 13 12 11 15 15 C 1.38034 * 120.39819 * 0.02562 * 14 13 12 16 16 C 1.38832 * 120.07380 * 359.97438 * 15 14 13 17 17 O 1.35514 * 120.16355 * 180.02562 * 16 15 14 18 18 C 1.34818 * 117.00098 * 5.82237 * 17 16 15 19 19 H 1.08011 * 119.99428 * 4.71121 * 18 17 16 20 20 C 1.38697 * 120.00397 * 184.71520 * 18 17 16 21 21 N 1.31515 * 119.99728 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46927 * 90.00260 * 22 20 18 24 24 H 1.48493 * 109.47245 * 209.99942 * 22 20 18 25 25 H 1.48499 * 109.47446 * 330.00404 * 22 20 18 26 26 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46849 * 299.99347 * 1 2 3 28 28 H 1.09001 * 109.47295 * 59.99873 * 1 2 3 29 29 H 1.09007 * 109.47170 * 240.00019 * 2 1 3 30 30 H 1.09001 * 109.47295 * 120.00127 * 2 1 3 31 31 H 1.08998 * 109.47316 * 59.99871 * 5 3 2 32 32 H 1.08997 * 109.47383 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.47437 * 300.00014 * 5 3 2 34 34 H 1.08990 * 109.47604 * 38.27171 * 7 6 3 35 35 H 1.09006 * 109.46653 * 158.27341 * 7 6 3 36 36 H 1.09003 * 109.47453 * 300.00512 * 8 7 6 37 37 H 1.09000 * 109.47279 * 60.00326 * 8 7 6 38 38 H 1.08996 * 109.47491 * 180.02562 * 8 7 6 39 39 H 1.07995 * 120.04108 * 359.97438 * 12 11 9 40 40 H 1.07997 * 119.83732 * 179.97438 * 13 12 11 41 41 H 1.07995 * 119.80519 * 180.27882 * 14 13 12 42 42 H 1.08000 * 119.96265 * 180.02562 * 15 14 13 43 43 H 0.96999 * 120.00069 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6525 2.0975 1.2519 7 6 2.1140 1.5588 2.5337 8 6 1.2132 0.3950 2.9519 9 6 0.8714 3.1955 1.2242 10 8 0.4447 3.6115 0.1643 11 6 0.5342 3.8926 2.4799 12 6 0.4633 3.1825 3.6805 13 6 0.1483 3.8396 4.8504 14 6 -0.0985 5.2031 4.8423 15 6 -0.0321 5.9180 3.6634 16 6 0.2838 5.2728 2.4754 17 8 0.3499 5.9729 1.3170 18 6 0.2175 7.3118 1.4026 19 1 0.1428 7.7863 2.3700 20 6 0.1772 8.0800 0.2485 21 7 0.2686 7.5023 -0.9294 22 14 -0.0070 9.9351 0.3672 23 1 1.3371 10.5623 0.4402 24 1 -0.7239 10.4391 -0.8316 25 1 -0.7805 10.2787 1.5874 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8531 0.9570 -1.0572 32 1 3.9282 2.4719 -0.1253 33 1 3.9995 0.9052 0.7160 34 1 3.1400 1.2055 2.4311 35 1 2.0731 2.3407 3.2921 36 1 0.1871 0.7484 3.0546 37 1 1.2540 -0.3868 2.1935 38 1 1.5563 -0.0054 3.9058 39 1 0.6552 2.1197 3.6921 40 1 0.0935 3.2891 5.7779 41 1 -0.3402 5.7104 5.7646 42 1 -0.2254 6.9806 3.6652 43 1 0.2401 8.0394 -1.7366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857634240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = -27.795807 kcal Electronic energy + Delta-G solvation = -24484.325583 eV Core-core repulsion = 21109.964306 eV Total energy + Delta-G solvation = -3374.361277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74740 -40.21768 -38.17575 -37.82710 -34.82429 -34.33917 -32.24217 -31.55031 -30.65208 -30.09985 -27.41570 -25.20831 -24.61649 -23.85218 -23.33943 -21.83778 -20.37908 -19.89410 -18.76396 -18.17370 -17.26912 -16.51742 -16.43610 -16.09775 -15.85639 -15.52712 -15.46400 -15.02392 -14.69588 -14.61518 -14.43874 -14.20776 -13.80826 -13.53645 -13.45052 -13.26536 -13.06996 -12.81198 -12.67514 -12.60551 -12.44684 -12.26497 -12.15044 -12.01897 -11.84561 -11.66962 -11.44436 -11.21112 -10.84713 -10.52310 -9.74666 -9.55203 -9.02511 -8.47281 -6.18469 0.17375 0.70540 1.30125 1.42038 1.49751 2.00291 2.14116 2.16248 2.83395 3.17878 3.42892 3.65786 3.92755 4.01936 4.09640 4.16576 4.18905 4.26093 4.40685 4.45269 4.53570 4.54357 4.61049 4.64254 4.71091 4.85291 4.90856 4.93594 5.03368 5.04568 5.06064 5.08320 5.14376 5.24088 5.29058 5.31232 5.49493 5.59757 5.61258 5.69629 5.84529 5.94607 6.17684 6.54570 6.92475 7.44957 7.78143 8.74079 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.005537 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.724811 B = 5055.467892 C = 6224.538228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.126 3.874 4 H 0.050 0.950 5 C -0.152 4.152 6 N -0.598 5.598 7 C 0.070 3.930 8 C -0.191 4.191 9 C 0.552 3.448 10 O -0.580 6.580 11 C -0.241 4.241 12 C -0.064 4.064 13 C -0.201 4.201 14 C -0.043 4.043 15 C -0.258 4.258 16 C 0.147 3.853 17 O -0.200 6.200 18 C -0.425 4.425 19 H 0.106 0.894 20 C -0.024 4.024 21 N -0.910 5.910 22 Si 1.024 2.976 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.248 1.248 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.024 0.976 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.187 0.813 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.122 0.878 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -15.763 11.837 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.023 3.977 4 H 0.068 0.932 5 C -0.210 4.210 6 N -0.331 5.331 7 C -0.051 4.051 8 C -0.248 4.248 9 C 0.343 3.657 10 O -0.460 6.460 11 C -0.246 4.246 12 C -0.081 4.081 13 C -0.220 4.220 14 C -0.061 4.061 15 C -0.277 4.277 16 C 0.092 3.908 17 O -0.104 6.104 18 C -0.501 4.501 19 H 0.123 0.877 20 C -0.223 4.223 21 N -0.546 5.546 22 Si 0.842 3.158 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.171 1.171 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.203 0.797 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.139 0.861 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.749 -15.570 10.793 19.531 hybrid contribution -0.351 1.524 -0.815 1.764 sum 4.398 -14.046 9.978 17.782 Atomic orbital electron populations 1.21772 0.96686 1.01772 1.00561 1.22087 0.95543 0.94065 1.04615 1.21178 0.95981 0.94305 0.86196 0.93186 1.22078 0.93520 1.01357 1.04066 1.47857 1.50023 1.26994 1.08239 1.22484 0.99944 0.97900 0.84746 1.22733 0.99425 0.98319 1.04274 1.18598 0.78371 0.80207 0.88513 1.90828 1.54916 1.66428 1.33833 1.19275 1.18255 0.91563 0.95478 1.22463 0.93563 1.02340 0.89753 1.21247 1.07367 0.94375 0.98982 1.21441 0.93166 0.94911 0.96580 1.21288 1.12150 1.01308 0.92996 1.20060 0.91730 0.91740 0.87252 1.84119 1.78125 1.20585 1.27530 1.21997 1.53275 0.79172 0.95654 0.87680 1.26787 0.95623 1.06525 0.93356 1.70313 1.47162 1.38597 0.98574 0.84537 0.79353 0.72839 0.79062 1.18537 1.19729 1.17084 0.90344 0.94066 0.95625 0.89350 0.87821 0.89701 0.95149 0.89477 0.88338 0.88508 0.92823 0.89510 0.87922 0.79671 0.81659 0.82861 0.86051 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.20 71.98 0.66 -3.18 16 2 C -0.13 -2.70 4.86 30.59 0.15 -2.55 16 3 C 0.13 3.88 2.64 44.99 0.12 4.00 16 4 H 0.05 2.05 6.90 -2.38 -0.02 2.03 16 5 C -0.15 -3.72 9.15 71.98 0.66 -3.07 16 6 N -0.60 -20.26 1.90 -801.57 -1.53 -21.79 16 7 C 0.07 1.58 5.23 86.38 0.45 2.03 16 8 C -0.19 -3.02 7.67 71.98 0.55 -2.47 16 9 C 0.55 26.43 7.38 86.69 0.64 27.06 16 10 O -0.58 -35.50 15.05 14.47 0.22 -35.28 16 11 C -0.24 -11.01 5.55 -19.99 -0.11 -11.12 16 12 C -0.06 -2.05 7.42 22.52 0.17 -1.88 16 13 C -0.20 -5.59 10.03 22.25 0.22 -5.37 16 14 C -0.04 -1.38 10.03 22.30 0.22 -1.16 16 15 C -0.26 -11.45 9.13 22.36 0.20 -11.25 16 16 C 0.15 7.85 6.63 22.91 0.15 8.00 16 17 O -0.20 -13.15 8.24 -1.55 -0.01 -13.16 16 18 C -0.43 -26.38 9.45 67.93 0.64 -25.73 16 19 H 0.11 5.86 5.29 -2.91 -0.02 5.84 16 20 C -0.02 -1.48 5.49 84.85 0.47 -1.01 16 21 N -0.91 -60.85 13.67 21.62 0.30 -60.55 16 22 Si 1.02 45.17 29.55 68.60 2.03 47.20 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.19 6.39 -2.39 -0.02 1.17 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.10 1.62 5.06 -2.39 -0.01 1.61 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.56 6.73 -2.38 -0.02 1.55 16 34 H 0.10 1.69 6.48 -2.39 -0.02 1.67 16 35 H 0.10 2.37 4.35 -2.38 -0.01 2.36 16 36 H 0.05 1.04 6.45 -2.39 -0.02 1.03 16 37 H 0.09 1.25 4.13 -2.39 -0.01 1.24 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.19 4.44 2.29 -2.91 -0.01 4.43 16 40 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 41 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.12 5.46 5.71 -2.91 -0.02 5.45 16 43 H 0.27 16.55 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -90.81 332.64 7.24 -83.57 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 1.04 Total: 27.71 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 5.20 Total: -27.69 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.23 Total: -82.34 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: 0.21 Total: -48.45 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -90.81 7.24 -83.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857634240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.777 kcal (2) G-P(sol) polarization free energy of solvation -90.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds