Wall clock time and date at job start Tue Mar 31 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 N 1.46496 * 109.47117 * 120.00170 * 2 1 3 5 5 C 1.46495 * 120.00219 * 299.99907 * 4 2 1 6 6 C 1.50705 * 109.47174 * 269.99909 * 5 4 2 7 7 H 1.07996 * 119.99728 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00143 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99957 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99845 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47229 * 89.99760 * 10 8 6 12 12 H 1.48496 * 109.46860 * 209.99732 * 10 8 6 13 13 H 1.48495 * 109.47145 * 329.99570 * 10 8 6 14 14 C 1.34777 * 119.99890 * 119.99715 * 4 2 1 15 15 O 1.21513 * 120.00290 * 179.97438 * 14 4 2 16 16 O 1.34641 * 120.00112 * 0.02562 * 14 4 2 17 17 C 1.45196 * 117.00069 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47145 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.09005 * 109.47046 * 299.99800 * 1 2 3 26 26 H 1.09005 * 109.47272 * 59.99555 * 1 2 3 27 27 H 1.08997 * 109.47690 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47046 * 240.00200 * 2 1 3 29 29 H 1.09003 * 109.47355 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47331 * 300.00409 * 3 2 1 31 31 H 1.08998 * 109.47539 * 60.00103 * 3 2 1 32 32 H 1.08998 * 109.47285 * 30.00175 * 5 4 2 33 33 H 1.08994 * 109.47458 * 150.00191 * 5 4 2 34 34 H 0.97002 * 120.00023 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.47505 * 59.99605 * 17 16 14 36 36 H 1.09004 * 109.47089 * 299.99658 * 17 16 14 37 37 H 1.09005 * 109.47610 * 60.00110 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99451 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 2.7032 0.8017 2.9830 7 1 3.5427 1.0362 2.3454 8 6 2.5812 1.4106 4.2140 9 7 3.4875 2.2766 4.6119 10 14 1.1287 1.0056 5.3165 11 1 1.4781 -0.1397 6.1948 12 1 0.7971 2.1873 6.1524 13 1 -0.0438 0.6472 4.4787 14 6 2.7931 -1.7865 1.0724 15 8 3.1985 -2.3591 2.0645 16 8 3.1187 -2.2462 -0.1505 17 6 3.9568 -3.4305 -0.2079 18 6 4.2179 -3.8001 -1.6694 19 6 5.0883 -5.0289 -1.7290 20 6 4.5104 -6.2845 -1.7560 21 6 5.3088 -7.4116 -1.8112 22 6 6.6848 -7.2833 -1.8401 23 6 7.2628 -6.0280 -1.8078 24 6 6.4644 -4.9006 -1.7572 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.6904 0.2973 2.4844 33 1 1.6238 -1.0227 3.2290 34 1 3.4019 2.7047 5.4781 35 1 3.4517 -4.2575 0.2909 36 1 4.9047 -3.2294 0.2913 37 1 4.7229 -2.9731 -2.1687 38 1 3.2699 -4.0013 -2.1683 39 1 3.4353 -6.3847 -1.7339 40 1 4.8574 -8.3925 -1.8319 41 1 7.3085 -8.1640 -1.8837 42 1 8.3380 -5.9278 -1.8259 43 1 6.9158 -3.9197 -1.7369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858945967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:51 Heat of formation + Delta-G solvation = -63.609267 kcal Electronic energy + Delta-G solvation = -22996.907908 eV Core-core repulsion = 19620.993642 eV Total energy + Delta-G solvation = -3375.914265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96197 -39.38748 -37.05072 -35.54838 -33.59992 -32.68746 -31.08124 -31.07214 -29.12081 -27.81916 -26.70352 -24.01662 -22.76974 -22.51770 -21.48141 -21.03431 -19.34659 -17.41080 -16.93858 -16.84886 -16.30528 -16.16719 -15.28568 -15.20936 -14.55264 -14.05663 -13.93835 -13.65692 -13.48999 -13.43320 -13.18352 -12.77198 -12.71652 -12.44395 -11.97295 -11.75496 -11.67977 -11.61361 -11.35011 -11.23579 -11.14814 -10.95125 -10.84050 -10.51728 -10.30605 -10.16014 -10.06935 -9.69617 -9.40392 -9.10945 -8.92271 -8.57379 -7.79748 -6.07381 -4.05332 1.11868 1.21151 2.78475 3.29682 3.35470 3.37879 3.58935 3.62127 4.37149 4.40447 4.63752 4.73347 4.83824 4.94862 5.02106 5.14507 5.25242 5.31714 5.35882 5.37534 5.46706 5.57373 5.67554 5.73297 5.77457 5.89944 5.92992 6.04014 6.13817 6.25775 6.29813 6.31829 6.35736 6.44452 6.58306 6.60636 6.80666 6.85095 7.02625 7.06047 7.32379 7.60077 8.23470 8.48405 8.96286 9.09751 9.52540 11.05763 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.003350 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.123909 B = 8354.990893 C = 8862.041955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 C -0.156 4.156 4 N -0.568 5.568 5 C 0.228 3.772 6 C -0.525 4.525 7 H 0.078 0.922 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.643 3.357 15 O -0.571 6.571 16 O -0.379 6.379 17 C 0.094 3.906 18 C -0.080 4.080 19 C -0.080 4.080 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 -13.870 -16.169 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 C -0.214 4.214 4 N -0.307 5.307 5 C 0.109 3.891 6 C -0.564 4.564 7 H 0.096 0.904 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.699 3.301 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.397 3.603 15 O -0.459 6.459 16 O -0.294 6.294 17 C 0.018 3.982 18 C -0.117 4.117 19 C -0.080 4.080 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.130 4.130 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.368 -13.959 -15.723 21.028 hybrid contribution -0.512 -0.171 0.833 0.992 sum -0.144 -14.130 -14.890 20.528 Atomic orbital electron populations 1.22173 0.95701 1.01736 1.02375 1.21015 0.93769 0.94279 0.87547 1.22133 1.01791 0.95248 1.02204 1.47019 1.49856 1.24919 1.08869 1.19687 0.96476 0.95128 0.77791 1.21352 1.09341 1.22543 1.03116 0.90407 1.24829 0.96100 0.94734 0.97289 1.69891 1.34579 1.28276 1.20763 0.86909 0.83406 0.78295 0.81445 1.19919 1.21070 1.19033 1.18031 0.79422 0.81728 0.81152 1.90960 1.57370 1.60160 1.37434 1.86146 1.66432 1.45150 1.31686 1.22728 0.94173 0.85088 0.96169 1.20516 0.99914 0.95472 0.95789 1.19686 0.93905 0.94286 1.00125 1.21115 1.00062 0.91961 0.99971 1.21147 0.93891 0.98526 1.00282 1.21170 0.95071 0.97471 1.00476 1.21167 0.99898 0.92576 1.00091 1.21151 0.93074 0.99094 0.99655 0.91689 0.91916 0.92899 0.89647 0.92467 0.93145 0.90142 0.94397 0.94531 0.92582 0.91521 0.91270 0.89736 0.89873 0.85871 0.86049 0.86179 0.85974 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.17 37.16 0.34 -2.01 16 2 C 0.14 2.37 3.27 -67.94 -0.22 2.15 16 3 C -0.16 -2.72 8.47 37.15 0.31 -2.41 16 4 N -0.57 -12.26 2.39 -173.24 -0.41 -12.67 16 5 C 0.23 5.59 3.66 -5.19 -0.02 5.57 16 6 C -0.52 -14.85 8.38 -34.44 -0.29 -15.14 16 7 H 0.08 2.42 7.87 -52.49 -0.41 2.01 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 10 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 14 C 0.64 14.26 8.40 54.06 0.45 14.71 16 15 O -0.57 -14.64 15.71 -19.28 -0.30 -14.94 16 16 O -0.38 -6.80 8.77 -40.33 -0.35 -7.16 16 17 C 0.09 1.39 5.46 37.15 0.20 1.60 16 18 C -0.08 -0.88 5.72 -27.88 -0.16 -1.04 16 19 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 20 C -0.11 -1.12 9.70 -39.58 -0.38 -1.51 16 21 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 24 C -0.11 -1.15 9.70 -39.58 -0.38 -1.54 16 25 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.34 6.81 -51.93 -0.35 0.99 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 32 H 0.04 0.88 5.48 -51.93 -0.28 0.59 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -33.40 355.95 -8.34 -41.74 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.77 Total: 1.10 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.97 Total: -3.50 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.36 Total: -39.31 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.66 Total: -22.10 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.40 -8.34 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858945967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.866 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds