Wall clock time and date at job start Tue Mar 31 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 N 1.46496 * 109.47117 * 120.00170 * 2 1 3 5 5 C 1.46495 * 120.00219 * 299.99907 * 4 2 1 6 6 C 1.50705 * 109.47174 * 269.99909 * 5 4 2 7 7 H 1.07996 * 119.99728 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00143 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99957 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99845 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47229 * 89.99760 * 10 8 6 12 12 H 1.48496 * 109.46860 * 209.99732 * 10 8 6 13 13 H 1.48495 * 109.47145 * 329.99570 * 10 8 6 14 14 C 1.34777 * 119.99890 * 119.99715 * 4 2 1 15 15 O 1.21513 * 120.00290 * 179.97438 * 14 4 2 16 16 O 1.34641 * 120.00112 * 0.02562 * 14 4 2 17 17 C 1.45196 * 117.00069 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47145 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.47301 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 17 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 17 25 25 H 1.09005 * 109.47046 * 299.99800 * 1 2 3 26 26 H 1.09005 * 109.47272 * 59.99555 * 1 2 3 27 27 H 1.08997 * 109.47690 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47046 * 240.00200 * 2 1 3 29 29 H 1.09003 * 109.47355 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47331 * 300.00409 * 3 2 1 31 31 H 1.08998 * 109.47539 * 60.00103 * 3 2 1 32 32 H 1.08998 * 109.47285 * 30.00175 * 5 4 2 33 33 H 1.08994 * 109.47458 * 150.00191 * 5 4 2 34 34 H 0.97002 * 120.00023 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.47505 * 59.99605 * 17 16 14 36 36 H 1.09004 * 109.47089 * 299.99658 * 17 16 14 37 37 H 1.09005 * 109.47610 * 60.00110 * 18 17 16 38 38 H 1.09000 * 109.47256 * 299.99451 * 18 17 16 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 2.7032 0.8017 2.9830 7 1 3.5427 1.0362 2.3454 8 6 2.5812 1.4106 4.2140 9 7 3.4875 2.2766 4.6119 10 14 1.1287 1.0056 5.3165 11 1 1.4781 -0.1397 6.1948 12 1 0.7971 2.1873 6.1524 13 1 -0.0438 0.6472 4.4787 14 6 2.7931 -1.7865 1.0724 15 8 3.1985 -2.3591 2.0645 16 8 3.1187 -2.2462 -0.1505 17 6 3.9568 -3.4305 -0.2079 18 6 4.2179 -3.8001 -1.6694 19 6 5.0883 -5.0289 -1.7290 20 6 4.5104 -6.2845 -1.7560 21 6 5.3088 -7.4116 -1.8112 22 6 6.6848 -7.2833 -1.8401 23 6 7.2628 -6.0280 -1.8078 24 6 6.4644 -4.9006 -1.7572 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.6904 0.2973 2.4844 33 1 1.6238 -1.0227 3.2290 34 1 3.4019 2.7047 5.4781 35 1 3.4517 -4.2575 0.2909 36 1 4.9047 -3.2294 0.2913 37 1 4.7229 -2.9731 -2.1687 38 1 3.2699 -4.0013 -2.1683 39 1 3.4353 -6.3847 -1.7339 40 1 4.8574 -8.3925 -1.8319 41 1 7.3085 -8.1640 -1.8837 42 1 8.3380 -5.9278 -1.8259 43 1 6.9158 -3.9197 -1.7369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858945967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:51 Heat of formation + Delta-G solvation = -82.585120 kcal Electronic energy + Delta-G solvation = -22997.730762 eV Core-core repulsion = 19620.993642 eV Total energy + Delta-G solvation = -3376.737120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56171 -40.19521 -38.56911 -37.21233 -34.88515 -34.48527 -32.71615 -31.78619 -30.48663 -29.40027 -27.99467 -25.36083 -24.23776 -23.48371 -22.99727 -21.88025 -20.95705 -19.12035 -18.94619 -17.93562 -17.62854 -17.58426 -16.52183 -16.19449 -15.98470 -15.60999 -15.29609 -14.99357 -14.87296 -14.50957 -14.27828 -14.02487 -13.99322 -13.71547 -13.62191 -13.32682 -12.98302 -12.84235 -12.75881 -12.60983 -12.37210 -12.32434 -12.02169 -11.93000 -11.90553 -11.81240 -11.62066 -11.50186 -11.32887 -10.79255 -9.83128 -9.68376 -9.57998 -8.30190 -6.34076 0.35374 0.49067 1.23823 1.36134 1.38693 1.46652 1.86510 2.33073 2.79472 3.00285 3.06652 3.81396 3.86524 3.97759 4.10645 4.10991 4.16548 4.26319 4.29381 4.30224 4.41508 4.55414 4.62498 4.65055 4.74110 4.86590 4.87204 4.87777 4.92305 5.03480 5.08741 5.12621 5.16682 5.31945 5.40528 5.46087 5.55535 5.56313 5.61643 5.62137 5.67761 6.10677 6.25789 6.54638 6.66483 7.23384 7.40703 8.86496 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.003350 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.123909 B = 8354.990893 C = 8862.041955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 C -0.149 4.149 4 N -0.573 5.573 5 C 0.239 3.761 6 C -0.526 4.526 7 H 0.032 0.968 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.941 3.059 11 H -0.277 1.277 12 H -0.276 1.276 13 H -0.235 1.235 14 C 0.639 3.361 15 O -0.615 6.615 16 O -0.365 6.365 17 C 0.090 3.910 18 C -0.065 4.065 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.129 4.129 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.028 0.972 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -15.235 -17.759 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.028 3.972 3 C -0.207 4.207 4 N -0.311 5.311 5 C 0.118 3.882 6 C -0.565 4.565 7 H 0.050 0.950 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.764 3.236 11 H -0.203 1.203 12 H -0.201 1.201 13 H -0.158 1.158 14 C 0.393 3.607 15 O -0.507 6.507 16 O -0.279 6.279 17 C 0.015 3.985 18 C -0.102 4.102 19 C -0.097 4.097 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.634 -15.324 -17.381 23.229 hybrid contribution 0.260 0.212 1.220 1.266 sum -1.374 -15.112 -16.161 22.168 Atomic orbital electron populations 1.22128 0.92902 1.02633 1.03554 1.21392 0.95967 0.93497 0.86317 1.22059 0.99946 0.95890 1.02774 1.47109 1.49695 1.24988 1.09324 1.19388 0.96144 0.93500 0.79157 1.21488 1.08965 1.23285 1.02756 0.94959 1.25774 0.99379 0.94424 0.98945 1.70044 1.37070 1.29822 1.21567 0.85817 0.80415 0.78021 0.79371 1.20312 1.20104 1.15773 1.18239 0.78979 0.81713 0.81725 1.90919 1.58975 1.61639 1.39171 1.86157 1.66541 1.46186 1.29062 1.23023 0.92713 0.83720 0.98996 1.20434 1.00982 0.95994 0.92781 1.19720 0.94049 0.94412 1.01547 1.21361 1.00974 0.91954 0.99832 1.21484 0.94124 0.99304 0.99580 1.21530 0.95476 0.98116 0.99376 1.21457 1.00877 0.92584 0.99795 1.21349 0.93331 0.99808 1.00164 0.92869 0.88333 0.92145 0.87723 0.95290 0.88939 0.93052 0.91998 0.96106 0.92351 0.91715 0.93013 0.89179 0.88243 0.84686 0.83864 0.83872 0.84296 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.17 71.98 0.66 -3.32 16 2 C 0.13 4.26 3.27 44.99 0.15 4.41 16 3 C -0.15 -5.10 8.47 71.98 0.61 -4.49 16 4 N -0.57 -24.68 2.39 -932.42 -2.23 -26.91 16 5 C 0.24 11.69 3.66 85.64 0.31 12.00 16 6 C -0.53 -30.74 8.38 25.60 0.21 -30.52 16 7 H 0.03 2.12 7.87 -2.91 -0.02 2.10 16 8 C 0.01 0.74 5.47 84.65 0.46 1.21 16 9 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 10 Si 0.94 44.02 27.47 68.60 1.88 45.90 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.23 -9.73 6.54 99.48 0.65 -9.08 16 14 C 0.64 28.69 8.40 129.79 1.09 29.78 16 15 O -0.61 -32.52 15.71 19.80 0.31 -32.21 16 16 O -0.37 -13.01 8.77 -55.51 -0.49 -13.50 16 17 C 0.09 2.70 5.46 71.98 0.39 3.09 16 18 C -0.06 -1.36 5.72 29.85 0.17 -1.19 16 19 C -0.10 -2.01 5.13 -19.86 -0.10 -2.11 16 20 C -0.12 -2.27 9.70 22.27 0.22 -2.06 16 21 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 22 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 23 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 24 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 25 H 0.05 1.50 6.66 -2.38 -0.02 1.49 16 26 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.10 3.04 6.81 -2.38 -0.02 3.02 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.05 2.05 6.92 -2.39 -0.02 2.04 16 32 H 0.06 2.75 5.48 -2.39 -0.01 2.73 16 33 H 0.02 1.09 6.85 -2.39 -0.02 1.08 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.09 1.79 8.09 -2.38 -0.02 1.77 16 38 H 0.10 1.77 8.09 -2.39 -0.02 1.75 16 39 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -75.68 355.95 5.77 -69.91 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.92 Total: 17.36 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.06 Total: -1.23 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.93 Total: -86.24 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -0.18 Total: -45.70 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -75.68 5.77 -69.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858945967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.676 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds