Wall clock time and date at job start Tue Mar 31 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99806 * 2 1 4 4 C 1.52995 * 109.46954 * 63.99210 * 3 2 1 5 5 C 1.53002 * 109.46849 * 303.99278 * 3 2 1 6 6 N 1.46503 * 109.47253 * 67.42237 * 5 3 2 7 7 C 1.39669 * 120.00209 * 186.26256 * 6 5 3 8 8 C 1.39009 * 120.03933 * 359.73389 * 7 6 5 9 9 C 1.38145 * 120.06178 * 179.69383 * 8 7 6 10 10 C 1.38178 * 120.14303 * 0.59911 * 9 8 7 11 11 C 1.38912 * 120.07705 * 359.67449 * 10 9 8 12 12 O 1.35750 * 120.03019 * 179.97438 * 11 10 9 13 13 C 1.34834 * 117.00027 * 186.02392 * 12 11 10 14 14 H 1.07999 * 119.99806 * 5.53454 * 13 12 11 15 15 C 1.38647 * 120.00161 * 185.54427 * 13 12 11 16 16 N 1.31563 * 119.99708 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00297 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47011 * 59.99571 * 17 15 13 19 19 H 1.48498 * 109.46995 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47097 * 299.99973 * 17 15 13 21 21 C 1.38749 * 120.04160 * 180.02562 * 7 6 5 22 22 C 1.53002 * 109.47043 * 183.99467 * 3 2 1 23 23 C 1.53005 * 117.49702 * 4.10374 * 22 3 2 24 24 C 1.52998 * 117.49904 * 295.44499 * 22 3 2 25 25 H 1.09005 * 109.47518 * 67.31697 * 1 2 3 26 26 H 1.09004 * 109.46967 * 187.31183 * 1 2 3 27 27 H 1.08998 * 109.47447 * 307.31450 * 1 2 3 28 28 H 1.08998 * 109.47172 * 299.99499 * 4 3 2 29 29 H 1.09000 * 109.47081 * 60.00170 * 4 3 2 30 30 H 1.09006 * 109.46941 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47013 * 187.42630 * 5 3 2 32 32 H 1.09004 * 109.47060 * 307.42455 * 5 3 2 33 33 H 0.96996 * 119.99424 * 6.27261 * 6 5 3 34 34 H 1.08002 * 119.96830 * 359.96997 * 8 7 6 35 35 H 1.08001 * 119.93128 * 180.27302 * 9 8 7 36 36 H 1.08001 * 119.95921 * 179.70151 * 10 9 8 37 37 H 0.97000 * 119.99441 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.06859 * 359.97438 * 21 7 6 39 39 H 1.09000 * 115.54802 * 149.77152 * 22 3 2 40 40 H 1.08994 * 117.50079 * 0.02562 * 23 22 3 41 41 H 1.09005 * 117.49592 * 145.02301 * 23 22 3 42 42 H 1.09002 * 117.50009 * 214.98274 * 24 22 3 43 43 H 1.09010 * 117.49557 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6397 2.0287 1.2964 5 6 1.4808 2.0994 -1.1960 6 7 0.0522 2.3663 -1.0113 7 6 -0.6847 2.9650 -2.0357 8 6 -0.0621 3.3130 -3.2288 9 6 -0.7918 3.8994 -4.2448 10 6 -2.1393 4.1532 -4.0740 11 6 -2.7661 3.8130 -2.8820 12 8 -4.0899 4.0632 -2.7150 13 6 -4.6087 3.8246 -1.4936 14 1 -3.9610 3.5371 -0.6786 15 6 -5.9737 3.9480 -1.2839 16 7 -6.7626 4.2985 -2.2767 17 14 -6.6926 3.6167 0.4081 18 1 -6.0922 4.5522 1.3928 19 1 -8.1635 3.8168 0.3688 20 1 -6.3933 2.2182 0.8079 21 6 -2.0376 3.2186 -1.8614 22 6 3.5322 1.1862 -0.1005 23 6 4.1209 -0.2152 -0.2752 24 6 4.2665 0.5153 1.0621 25 1 -0.3634 0.3963 -0.9482 26 1 -0.3633 -1.0194 0.1308 27 1 -0.3634 0.6229 0.8173 28 1 0.5554 2.1137 1.3679 29 1 2.0169 1.4631 2.1484 30 1 2.0827 3.0247 1.2962 31 1 2.0199 3.0437 -1.2727 32 1 1.6274 1.5221 -2.1089 33 1 -0.3819 2.1273 -0.1774 34 1 0.9921 3.1207 -3.3634 35 1 -0.3069 4.1649 -5.1726 36 1 -2.7058 4.6161 -4.8684 37 1 -7.7175 4.3852 -2.1299 38 1 -2.5228 2.9531 -0.9338 39 1 4.0360 2.0103 -0.6055 40 1 3.4239 -1.0520 -0.3190 41 1 5.0124 -0.3129 -0.8949 42 1 5.2536 0.8978 1.3217 43 1 3.6652 0.1593 1.8988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877169220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:38 Heat of formation + Delta-G solvation = -2.369813 kcal Electronic energy + Delta-G solvation = -23438.828469 eV Core-core repulsion = 20065.569745 eV Total energy + Delta-G solvation = -3373.258723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21190 -38.87210 -36.98133 -36.25816 -34.42647 -32.21459 -31.47347 -29.18990 -28.20513 -27.51562 -25.68643 -25.19132 -22.97751 -22.42078 -21.74629 -20.46895 -19.95638 -17.88929 -17.52123 -16.42205 -16.27784 -15.83864 -15.29440 -15.03899 -14.81321 -14.43430 -14.15549 -13.89104 -13.82798 -13.52402 -13.03539 -12.92764 -12.77934 -12.46786 -12.30053 -12.12242 -11.65309 -11.59544 -11.41292 -11.31302 -11.06570 -10.87415 -10.78894 -10.59802 -10.48885 -10.39104 -10.34400 -9.66709 -9.40064 -9.24861 -8.74929 -7.35088 -6.76582 -6.41029 -4.00395 2.38078 2.57052 3.13532 3.14939 3.17440 3.43307 3.63959 3.76944 3.99208 4.42170 4.55661 4.69527 4.70978 4.85792 5.03058 5.12469 5.16505 5.19201 5.36014 5.42435 5.48718 5.50931 5.51718 5.56515 5.69719 5.71990 5.84811 5.87323 5.92646 5.98886 6.02940 6.09439 6.27843 6.36020 6.61995 6.64860 7.02837 7.08913 7.14603 7.39079 7.47712 7.65188 7.97657 8.04569 8.15093 9.04917 9.77875 10.77304 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.003890 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.434245 B = 7196.310877 C = 8304.208658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.375 6.375 3 C 0.136 3.864 4 C -0.175 4.175 5 C 0.112 3.888 6 N -0.757 5.757 7 C 0.245 3.755 8 C -0.277 4.277 9 C -0.040 4.040 10 C -0.236 4.236 11 C 0.189 3.811 12 O -0.178 6.178 13 C -0.389 4.389 14 H 0.089 0.911 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.939 3.061 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.271 1.271 21 C -0.302 4.302 22 C -0.146 4.146 23 C -0.163 4.163 24 C -0.173 4.173 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.395 0.605 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.270 0.730 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.611 -6.573 5.966 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.295 6.295 3 C 0.096 3.904 4 C -0.232 4.232 5 C -0.013 4.013 6 N -0.394 5.394 7 C 0.145 3.855 8 C -0.300 4.300 9 C -0.059 4.059 10 C -0.256 4.256 11 C 0.135 3.865 12 O -0.081 6.081 13 C -0.466 4.466 14 H 0.106 0.894 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.325 4.325 22 C -0.165 4.165 23 C -0.200 4.200 24 C -0.209 4.209 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.456 -6.619 5.714 20.422 hybrid contribution -0.727 -0.008 1.238 1.435 sum 17.729 -6.627 6.952 20.163 Atomic orbital electron populations 1.23271 0.80924 1.02493 1.01987 1.87906 1.19937 1.26553 1.95064 1.21060 0.91714 0.83529 0.94089 1.22361 1.02001 1.01362 0.97512 1.21756 0.82586 0.98963 0.98023 1.45125 1.07854 1.69139 1.17277 1.17468 0.90074 0.90344 0.87655 1.20082 0.99107 1.15648 0.95157 1.20383 0.92923 0.95587 0.96997 1.20045 0.94789 1.12877 0.97912 1.19073 0.84927 0.90064 0.92446 1.84004 1.17115 1.73528 1.33449 1.21223 0.91698 1.48751 0.84886 0.89362 1.25263 0.95020 0.96755 0.99481 1.70033 1.04849 1.43797 1.31255 0.85823 0.78246 0.79071 0.80512 1.19595 1.20282 1.19619 1.20485 0.92989 1.16279 1.02782 1.22137 0.91678 0.98006 1.04674 1.22885 1.02281 0.95530 0.99256 1.22939 1.01218 1.04254 0.92539 0.90911 0.90081 0.94045 0.92079 0.91510 0.91031 0.92011 0.91288 0.76650 0.87880 0.87206 0.86913 0.92050 0.85967 0.86599 0.87536 0.89094 0.88900 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.21 101.05 0.93 1.04 16 2 O -0.38 -4.54 8.71 -35.23 -0.31 -4.84 16 3 C 0.14 1.46 0.93 -90.62 -0.08 1.37 16 4 C -0.17 -1.76 7.93 37.16 0.29 -1.47 16 5 C 0.11 1.38 3.80 -4.04 -0.02 1.36 16 6 N -0.76 -11.18 3.40 -58.65 -0.20 -11.38 16 7 C 0.25 4.57 6.65 -83.81 -0.56 4.01 16 8 C -0.28 -4.96 9.28 -39.33 -0.36 -5.32 16 9 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 10 C -0.24 -5.15 9.99 -39.35 -0.39 -5.54 16 11 C 0.19 4.68 6.64 -39.14 -0.26 4.42 16 12 O -0.18 -5.16 9.76 0.04 0.00 -5.16 16 13 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 14 H 0.09 2.30 5.30 -52.49 -0.28 2.03 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 17 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.30 -6.64 8.97 -39.20 -0.35 -6.99 16 22 C -0.15 -1.34 5.22 -90.62 -0.47 -1.81 16 23 C -0.16 -1.45 9.87 -26.69 -0.26 -1.71 16 24 C -0.17 -1.42 9.69 -26.69 -0.26 -1.67 16 25 H 0.07 1.00 5.88 -51.93 -0.31 0.70 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.46 5.49 -51.93 -0.29 0.18 16 28 H 0.06 0.65 5.07 -51.93 -0.26 0.39 16 29 H 0.07 0.62 7.02 -51.93 -0.36 0.26 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.90 7.62 -51.93 -0.40 0.50 16 33 H 0.39 5.54 4.40 -40.82 -0.18 5.36 16 34 H 0.10 1.60 6.70 -52.49 -0.35 1.25 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.12 2.70 5.72 -52.49 -0.30 2.40 16 39 H 0.12 0.94 8.05 -51.93 -0.42 0.52 16 40 H 0.11 1.09 7.03 -51.93 -0.36 0.73 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.82 7.32 -51.92 -0.38 0.44 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -30.82 340.24 -7.62 -38.45 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.98 Total: 10.20 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -2.00 Total: -23.16 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.56 Total: -36.20 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.31 Total: -10.00 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.82 -7.62 -38.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877169220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.075 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds