Wall clock time and date at job start Tue Mar 31 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99806 * 2 1 4 4 C 1.52995 * 109.46954 * 63.99210 * 3 2 1 5 5 C 1.53002 * 109.46849 * 303.99278 * 3 2 1 6 6 N 1.46503 * 109.47253 * 67.42237 * 5 3 2 7 7 C 1.39669 * 120.00209 * 186.26256 * 6 5 3 8 8 C 1.39009 * 120.03933 * 359.73389 * 7 6 5 9 9 C 1.38145 * 120.06178 * 179.69383 * 8 7 6 10 10 C 1.38178 * 120.14303 * 0.59911 * 9 8 7 11 11 C 1.38912 * 120.07705 * 359.67449 * 10 9 8 12 12 O 1.35750 * 120.03019 * 179.97438 * 11 10 9 13 13 C 1.34834 * 117.00027 * 186.02392 * 12 11 10 14 14 H 1.07999 * 119.99806 * 5.53454 * 13 12 11 15 15 C 1.38647 * 120.00161 * 185.54427 * 13 12 11 16 16 N 1.31563 * 119.99708 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00297 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47011 * 59.99571 * 17 15 13 19 19 H 1.48498 * 109.46995 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47097 * 299.99973 * 17 15 13 21 21 C 1.38749 * 120.04160 * 180.02562 * 7 6 5 22 22 C 1.53002 * 109.47043 * 183.99467 * 3 2 1 23 23 C 1.53005 * 117.49702 * 4.10374 * 22 3 2 24 24 C 1.52998 * 117.49904 * 295.44499 * 22 3 2 25 25 H 1.09005 * 109.47518 * 67.31697 * 1 2 3 26 26 H 1.09004 * 109.46967 * 187.31183 * 1 2 3 27 27 H 1.08998 * 109.47447 * 307.31450 * 1 2 3 28 28 H 1.08998 * 109.47172 * 299.99499 * 4 3 2 29 29 H 1.09000 * 109.47081 * 60.00170 * 4 3 2 30 30 H 1.09006 * 109.46941 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47013 * 187.42630 * 5 3 2 32 32 H 1.09004 * 109.47060 * 307.42455 * 5 3 2 33 33 H 0.96996 * 119.99424 * 6.27261 * 6 5 3 34 34 H 1.08002 * 119.96830 * 359.96997 * 8 7 6 35 35 H 1.08001 * 119.93128 * 180.27302 * 9 8 7 36 36 H 1.08001 * 119.95921 * 179.70151 * 10 9 8 37 37 H 0.97000 * 119.99441 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.06859 * 359.97438 * 21 7 6 39 39 H 1.09000 * 115.54802 * 149.77152 * 22 3 2 40 40 H 1.08994 * 117.50079 * 0.02562 * 23 22 3 41 41 H 1.09005 * 117.49592 * 145.02301 * 23 22 3 42 42 H 1.09002 * 117.50009 * 214.98274 * 24 22 3 43 43 H 1.09010 * 117.49557 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6397 2.0287 1.2964 5 6 1.4808 2.0994 -1.1960 6 7 0.0522 2.3663 -1.0113 7 6 -0.6847 2.9650 -2.0357 8 6 -0.0621 3.3130 -3.2288 9 6 -0.7918 3.8994 -4.2448 10 6 -2.1393 4.1532 -4.0740 11 6 -2.7661 3.8130 -2.8820 12 8 -4.0899 4.0632 -2.7150 13 6 -4.6087 3.8246 -1.4936 14 1 -3.9610 3.5371 -0.6786 15 6 -5.9737 3.9480 -1.2839 16 7 -6.7626 4.2985 -2.2767 17 14 -6.6926 3.6167 0.4081 18 1 -6.0922 4.5522 1.3928 19 1 -8.1635 3.8168 0.3688 20 1 -6.3933 2.2182 0.8079 21 6 -2.0376 3.2186 -1.8614 22 6 3.5322 1.1862 -0.1005 23 6 4.1209 -0.2152 -0.2752 24 6 4.2665 0.5153 1.0621 25 1 -0.3634 0.3963 -0.9482 26 1 -0.3633 -1.0194 0.1308 27 1 -0.3634 0.6229 0.8173 28 1 0.5554 2.1137 1.3679 29 1 2.0169 1.4631 2.1484 30 1 2.0827 3.0247 1.2962 31 1 2.0199 3.0437 -1.2727 32 1 1.6274 1.5221 -2.1089 33 1 -0.3819 2.1273 -0.1774 34 1 0.9921 3.1207 -3.3634 35 1 -0.3069 4.1649 -5.1726 36 1 -2.7058 4.6161 -4.8684 37 1 -7.7175 4.3852 -2.1299 38 1 -2.5228 2.9531 -0.9338 39 1 4.0360 2.0103 -0.6055 40 1 3.4239 -1.0520 -0.3190 41 1 5.0124 -0.3129 -0.8949 42 1 5.2536 0.8978 1.3217 43 1 3.6652 0.1593 1.8988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877169220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:37 Heat of formation + Delta-G solvation = -20.474413 kcal Electronic energy + Delta-G solvation = -23439.613543 eV Core-core repulsion = 20065.569745 eV Total energy + Delta-G solvation = -3374.043798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25999 -40.48222 -38.52745 -37.16074 -35.77352 -34.21100 -32.54768 -30.73394 -29.70394 -28.45431 -27.29556 -26.68994 -23.95416 -23.37006 -23.04164 -22.01243 -20.85200 -19.75256 -19.03233 -17.68942 -17.20364 -16.97479 -16.65678 -16.46904 -16.02546 -15.84767 -15.57021 -15.45916 -15.25689 -14.72040 -14.44789 -14.16620 -13.98377 -13.82367 -13.48934 -13.36826 -13.08667 -12.84337 -12.50375 -12.46447 -12.33387 -12.19999 -12.13682 -12.00508 -11.86443 -11.34666 -11.26553 -11.08398 -10.88112 -10.62236 -10.39266 -9.10795 -8.45418 -8.23163 -6.13874 0.75561 0.90995 1.33656 1.45263 1.50188 2.18155 2.43016 2.65470 2.88975 2.98196 3.27017 3.58135 3.59371 3.73835 3.93149 4.16467 4.19535 4.25798 4.28153 4.40022 4.42377 4.51461 4.57568 4.60572 4.62095 4.72421 4.78912 4.82146 4.88557 4.92661 5.02731 5.10780 5.14739 5.15220 5.18942 5.30478 5.40967 5.44152 5.74521 5.80149 6.00657 6.09896 6.18805 6.54210 6.74176 6.99627 7.83156 8.78017 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.003890 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.434245 B = 7196.310877 C = 8304.208658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.382 6.382 3 C 0.137 3.863 4 C -0.174 4.174 5 C 0.109 3.891 6 N -0.746 5.746 7 C 0.253 3.747 8 C -0.263 4.263 9 C -0.026 4.026 10 C -0.261 4.261 11 C 0.153 3.847 12 O -0.232 6.232 13 C -0.410 4.410 14 H 0.098 0.902 15 C -0.023 4.023 16 N -0.922 5.922 17 Si 1.017 2.983 18 H -0.258 1.258 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.314 4.314 22 C -0.152 4.152 23 C -0.168 4.168 24 C -0.164 4.164 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.272 0.728 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.993 -7.250 7.259 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.302 6.302 3 C 0.097 3.903 4 C -0.231 4.231 5 C -0.015 4.015 6 N -0.380 5.380 7 C 0.150 3.850 8 C -0.285 4.285 9 C -0.044 4.044 10 C -0.282 4.282 11 C 0.102 3.898 12 O -0.138 6.138 13 C -0.487 4.487 14 H 0.115 0.885 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.836 3.164 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.181 1.181 21 C -0.338 4.338 22 C -0.170 4.170 23 C -0.205 4.205 24 C -0.201 4.201 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.238 0.762 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.150 0.850 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 21.923 -7.321 7.023 24.157 hybrid contribution -1.419 0.127 0.759 1.614 sum 20.504 -7.194 7.781 23.081 Atomic orbital electron populations 1.23219 0.81121 1.03186 1.01025 1.87923 1.19751 1.27502 1.95009 1.21150 0.92773 0.82763 0.93601 1.22361 1.01438 1.01879 0.97469 1.21971 0.80732 0.99964 0.98860 1.45239 1.08914 1.67481 1.16403 1.17533 0.89061 0.89460 0.88960 1.20554 1.00717 1.13244 0.94026 1.20826 0.91288 0.93648 0.98686 1.20271 0.96514 1.14211 0.97164 1.19631 0.84097 0.91640 0.94437 1.83961 1.19455 1.76261 1.34121 1.21719 0.92522 1.49004 0.85426 0.88452 1.26574 0.95036 0.96200 1.04244 1.70187 1.05235 1.46450 1.34147 0.84682 0.77367 0.79649 0.74719 1.18223 1.19591 1.18139 1.20485 0.94549 1.16916 1.01887 1.22203 0.90451 0.98659 1.05721 1.22894 1.02489 0.94823 1.00245 1.22993 1.01787 1.03367 0.91921 0.92947 0.89138 0.93419 0.93028 0.90772 0.90203 0.90423 0.91417 0.76209 0.84201 0.83064 0.87546 0.91885 0.86986 0.85016 0.89245 0.87660 0.87112 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.21 113.37 1.04 1.29 16 2 O -0.38 -8.47 8.71 -148.98 -1.30 -9.77 16 3 C 0.14 2.54 0.93 -10.79 -0.01 2.53 16 4 C -0.17 -3.05 7.93 71.98 0.57 -2.48 16 5 C 0.11 2.31 3.80 86.38 0.33 2.64 16 6 N -0.75 -20.43 3.40 -339.46 -1.15 -21.59 16 7 C 0.25 9.03 6.65 38.20 0.25 9.29 16 8 C -0.26 -8.53 9.28 22.43 0.21 -8.32 16 9 C -0.03 -0.90 10.03 22.23 0.22 -0.67 16 10 C -0.26 -11.60 9.99 22.42 0.22 -11.37 16 11 C 0.15 7.90 6.64 22.56 0.15 8.05 16 12 O -0.23 -14.33 9.76 -22.79 -0.22 -14.55 16 13 C -0.41 -24.37 9.44 67.92 0.64 -23.73 16 14 H 0.10 5.32 5.30 -2.91 -0.02 5.30 16 15 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 16 N -0.92 -57.47 13.67 21.61 0.30 -57.18 16 17 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 C -0.31 -14.11 8.97 22.52 0.20 -13.90 16 22 C -0.15 -2.26 5.22 -10.79 -0.06 -2.32 16 23 C -0.17 -2.52 9.87 30.62 0.30 -2.22 16 24 C -0.16 -2.17 9.69 30.62 0.30 -1.87 16 25 H 0.05 1.39 5.88 -2.38 -0.01 1.37 16 26 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.05 1.00 5.49 -2.39 -0.01 0.99 16 28 H 0.05 1.00 5.07 -2.39 -0.01 0.98 16 29 H 0.07 1.19 7.02 -2.39 -0.02 1.18 16 30 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.07 1.51 7.62 -2.38 -0.02 1.49 16 33 H 0.40 10.59 4.40 -92.71 -0.41 10.19 16 34 H 0.14 3.58 6.70 -2.91 -0.02 3.56 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.11 5.14 5.72 -2.91 -0.02 5.12 16 39 H 0.13 1.56 8.05 -2.39 -0.02 1.54 16 40 H 0.09 1.67 7.03 -2.39 -0.02 1.66 16 41 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.31 7.32 -2.38 -0.02 1.29 16 Total: -1.00 -71.41 340.24 5.11 -66.30 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.62 Total: 35.45 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 4.84 Total: -43.96 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -0.86 Total: -78.76 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.52 Total: -24.32 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -71.41 5.11 -66.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877169220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.828 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds