Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47128 * 147.48427 * 3 2 1 5 5 C 1.37092 * 119.99451 * 263.92685 * 4 3 2 6 6 H 1.08010 * 119.99420 * 199.75225 * 5 4 3 7 7 C 1.38949 * 120.00553 * 19.75206 * 5 4 3 8 8 N 1.31404 * 119.99736 * 21.74278 * 7 5 4 9 9 Si 1.86798 * 119.99908 * 201.74425 * 7 5 4 10 10 H 1.48508 * 109.47347 * 59.99962 * 9 7 5 11 11 H 1.48507 * 109.47071 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47524 * 300.00182 * 9 7 5 13 13 C 1.34771 * 120.00096 * 83.91989 * 4 3 2 14 14 O 1.21288 * 119.99998 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00010 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47140 * 179.97438 * 15 13 4 17 17 H 1.09000 * 109.42794 * 55.08722 * 16 15 13 18 18 C 1.53074 * 109.43444 * 174.99665 * 16 15 13 19 19 C 1.53348 * 109.07950 * 179.48453 * 18 16 15 20 20 C 1.52849 * 108.74550 * 305.14748 * 19 18 16 21 21 C 1.53327 * 113.59483 * 184.28310 * 20 19 18 22 22 C 1.53864 * 86.95828 * 89.47755 * 21 20 19 23 23 C 1.53353 * 113.54675 * 282.26896 * 20 19 18 24 24 C 1.52756 * 112.68371 * 53.21405 * 20 19 18 25 25 O 1.42858 * 109.43339 * 295.22690 * 16 15 13 26 26 H 4.40648 * 5.51548 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47749 * 27.48160 * 3 2 1 28 28 H 1.09002 * 109.47411 * 267.48121 * 3 2 1 29 29 H 0.97000 * 119.99600 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47073 * 59.99768 * 15 13 4 31 31 H 1.09003 * 109.47074 * 299.99649 * 15 13 4 32 32 H 1.09011 * 109.53533 * 59.60357 * 18 16 15 33 33 H 1.08997 * 109.60830 * 299.40747 * 18 16 15 34 34 H 1.09003 * 109.59368 * 185.37293 * 19 18 16 35 35 H 1.08994 * 109.71709 * 64.99911 * 19 18 16 36 36 H 1.09009 * 113.63209 * 334.96409 * 21 20 19 37 37 H 1.08999 * 113.64065 * 203.99472 * 21 20 19 38 38 H 1.09005 * 113.59839 * 139.68168 * 22 21 20 39 39 H 1.08992 * 113.60394 * 270.54654 * 22 21 20 40 40 H 1.09001 * 113.63747 * 155.96247 * 23 20 19 41 41 H 1.08997 * 113.63296 * 24.98815 * 23 20 19 42 42 H 1.08995 * 109.52845 * 66.26956 * 24 20 19 43 43 H 1.08999 * 109.52656 * 186.47750 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.1656 -0.7425 5 6 3.4807 1.0407 -2.0629 6 1 4.1236 1.7759 -2.5241 7 6 3.0053 -0.0316 -2.8078 8 7 1.9247 -0.6720 -2.4218 9 14 3.9023 -0.5628 -4.3578 10 1 5.2939 -0.9526 -4.0155 11 1 3.1991 -1.7217 -4.9642 12 1 3.9277 0.5632 -5.3256 13 6 3.2413 2.3600 -0.1275 14 8 3.6456 3.3243 -0.7421 15 6 2.8603 2.4971 1.3241 16 6 3.0754 3.9438 1.7734 17 1 2.5230 4.6140 1.1147 18 6 2.5719 4.1114 3.2092 19 6 2.8031 5.5602 3.6556 20 6 4.2805 5.9030 3.4653 21 6 4.6574 7.2986 3.9762 22 6 4.9393 6.6351 5.3355 23 6 5.1883 5.3297 4.5602 24 6 4.7743 5.6150 2.0487 25 8 4.4675 4.2587 1.7115 26 1 -1.0503 -0.0001 0.0003 27 1 3.0098 -0.9108 -0.4742 28 1 3.0093 0.0460 1.0267 29 1 1.5931 -1.4207 -2.9416 30 1 3.4807 1.8337 1.9268 31 1 1.8115 2.2290 1.4514 32 1 3.1173 3.4355 3.8680 33 1 1.5072 3.8822 3.2525 34 1 2.5359 5.6658 4.7071 35 1 2.1915 6.2324 3.0538 36 1 3.8209 7.9973 3.9961 37 1 5.5457 7.7133 3.4998 38 1 5.8277 7.0227 5.8344 39 1 4.0689 6.5946 5.9903 40 1 6.2237 5.1991 4.2454 41 1 4.7785 4.4461 5.0493 42 1 4.2790 6.2858 1.3468 43 1 5.8525 5.7673 2.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890401298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = -1.983345 kcal Electronic energy + Delta-G solvation = -23910.853248 eV Core-core repulsion = 20537.611283 eV Total energy + Delta-G solvation = -3373.241965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.45616 -38.61308 -36.94552 -34.98257 -32.96177 -32.07197 -31.14044 -30.54173 -27.62754 -26.32196 -25.77225 -24.89259 -23.72851 -22.52641 -20.87432 -18.85677 -18.24170 -17.79111 -16.57750 -16.22656 -16.00103 -15.57541 -15.47941 -14.73179 -14.38201 -14.14919 -13.95404 -13.82922 -13.25397 -13.03243 -12.60490 -12.56158 -12.40566 -12.21354 -11.96301 -11.57733 -11.47887 -11.21369 -11.12852 -11.04603 -10.88654 -10.84184 -10.48069 -10.37126 -10.24816 -10.15016 -9.85744 -9.31859 -9.16412 -8.90033 -8.84299 -8.26022 -7.74583 -6.24665 -3.77590 3.23022 3.29292 3.33336 3.75129 4.00569 4.05280 4.14597 4.24569 4.50542 4.54099 4.62997 4.73388 4.85758 5.06579 5.11756 5.21166 5.30749 5.33726 5.51339 5.52723 5.58377 5.65755 5.71843 5.76023 5.77711 5.82664 5.88518 5.94623 5.96604 6.03237 6.06673 6.14678 6.26867 6.32432 6.41797 6.46452 6.53624 6.77573 7.06143 7.64439 7.70615 8.16931 8.52984 8.84849 9.24557 9.46073 10.04180 10.76510 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.003895 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.964035 B = 7187.113442 C = 7870.015428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.233 3.767 4 N -0.447 5.447 5 C -0.313 4.313 6 H 0.101 0.899 7 C 0.031 3.969 8 N -0.864 5.864 9 Si 0.918 3.082 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.460 3.540 14 O -0.571 6.571 15 C -0.128 4.128 16 C 0.114 3.886 17 H 0.060 0.940 18 C -0.149 4.149 19 C -0.094 4.094 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.123 4.123 24 C 0.080 3.920 25 O -0.357 6.357 26 H 0.198 0.802 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.267 0.733 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 7.977 14.816 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.166 5.166 5 C -0.441 4.441 6 H 0.119 0.881 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.745 3.255 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.248 3.752 14 O -0.453 6.453 15 C -0.168 4.168 16 C 0.055 3.945 17 H 0.078 0.922 18 C -0.187 4.187 19 C -0.132 4.132 20 C -0.118 4.118 21 C -0.168 4.168 22 C -0.179 4.179 23 C -0.160 4.160 24 C 0.003 3.997 25 O -0.275 6.275 26 H 0.215 0.785 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.685 8.147 14.355 16.591 hybrid contribution -0.292 -0.315 -0.793 0.902 sum 1.393 7.832 13.561 15.723 Atomic orbital electron populations 1.24250 0.95342 1.02767 1.05887 1.23228 0.94394 0.98078 0.95585 1.18192 0.84200 0.92409 0.94265 1.43663 1.56873 1.05781 1.10329 1.19572 1.28149 1.10742 0.85622 0.88105 1.25256 0.95053 0.97944 0.99049 1.70076 1.18071 1.21868 1.40229 0.86128 0.79599 0.78159 0.81597 1.19975 1.21158 1.19956 1.19959 0.83709 0.83118 0.88408 1.90523 1.50006 1.37503 1.67297 1.21663 1.02523 0.96052 0.96576 1.21668 0.83194 0.95964 0.93635 0.92164 1.22253 1.01654 0.96799 0.98015 1.21333 0.93901 0.96717 1.01206 1.22247 0.96115 0.96801 0.96629 1.22855 1.01471 0.95747 0.96726 1.22857 1.01352 0.97372 0.96345 1.22842 0.99729 0.97026 0.96436 1.22415 1.00101 0.84752 0.92431 1.88048 1.23655 1.26690 1.89120 0.78472 0.87719 0.91999 0.92278 0.89798 0.89009 0.91105 0.90926 0.91633 0.91651 0.91535 0.90048 0.91772 0.90451 0.90055 0.91468 0.93477 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.11 -2.49 10.75 -37.13 -0.40 -2.89 16 3 C 0.23 5.19 4.91 -6.83 -0.03 5.16 16 4 N -0.45 -11.48 2.60 -117.93 -0.31 -11.79 16 5 C -0.31 -8.80 9.28 -14.94 -0.14 -8.94 16 6 H 0.10 2.99 7.42 -52.48 -0.39 2.60 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.73 16 8 N -0.86 -23.05 9.59 55.50 0.53 -22.52 16 9 Si 0.92 20.87 29.60 -169.99 -5.03 15.84 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.46 11.39 7.44 -10.99 -0.08 11.31 16 14 O -0.57 -16.11 15.08 -9.13 -0.14 -16.25 16 15 C -0.13 -2.41 4.02 -27.88 -0.11 -2.52 16 16 C 0.11 1.96 2.13 -26.69 -0.06 1.90 16 17 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 18 C -0.15 -1.94 5.35 -26.51 -0.14 -2.08 16 19 C -0.09 -1.07 5.11 -26.63 -0.14 -1.20 16 20 C -0.12 -1.35 0.86 -154.36 -0.13 -1.49 16 21 C -0.13 -1.24 7.23 -26.11 -0.19 -1.42 16 22 C -0.14 -1.25 7.73 -25.83 -0.20 -1.45 16 23 C -0.12 -1.30 7.13 -26.10 -0.19 -1.49 16 24 C 0.08 1.17 6.02 37.03 0.22 1.39 16 25 O -0.36 -6.61 9.63 -49.92 -0.48 -7.09 16 26 H 0.20 3.32 7.80 -54.08 -0.42 2.90 16 27 H 0.10 2.46 6.60 -51.93 -0.34 2.11 16 28 H 0.06 1.15 6.70 -51.93 -0.35 0.80 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.08 1.44 7.42 -51.93 -0.39 1.06 16 31 H 0.09 1.62 7.49 -51.93 -0.39 1.23 16 32 H 0.07 0.89 7.67 -51.92 -0.40 0.49 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.64 7.34 -51.93 -0.38 0.26 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.59 8.09 -51.92 -0.42 0.17 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 40 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 41 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -31.96 344.65 -8.09 -40.05 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.76 Total: 4.42 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.10 Total: -7.86 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.23 Total: -34.31 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.62 Total: -23.33 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.96 -8.09 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.068 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds