Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47128 * 147.48427 * 3 2 1 5 5 C 1.37092 * 119.99451 * 263.92685 * 4 3 2 6 6 H 1.08010 * 119.99420 * 199.75225 * 5 4 3 7 7 C 1.38949 * 120.00553 * 19.75206 * 5 4 3 8 8 N 1.31404 * 119.99736 * 21.74278 * 7 5 4 9 9 Si 1.86798 * 119.99908 * 201.74425 * 7 5 4 10 10 H 1.48508 * 109.47347 * 59.99962 * 9 7 5 11 11 H 1.48507 * 109.47071 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47524 * 300.00182 * 9 7 5 13 13 C 1.34771 * 120.00096 * 83.91989 * 4 3 2 14 14 O 1.21288 * 119.99998 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00010 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47140 * 179.97438 * 15 13 4 17 17 H 1.09000 * 109.42794 * 55.08722 * 16 15 13 18 18 C 1.53074 * 109.43444 * 174.99665 * 16 15 13 19 19 C 1.53348 * 109.07950 * 179.48453 * 18 16 15 20 20 C 1.52849 * 108.74550 * 305.14748 * 19 18 16 21 21 C 1.53327 * 113.59483 * 184.28310 * 20 19 18 22 22 C 1.53864 * 86.95828 * 89.47755 * 21 20 19 23 23 C 1.53353 * 113.54675 * 282.26896 * 20 19 18 24 24 C 1.52756 * 112.68371 * 53.21405 * 20 19 18 25 25 O 1.42858 * 109.43339 * 295.22690 * 16 15 13 26 26 H 4.40648 * 5.51548 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47749 * 27.48160 * 3 2 1 28 28 H 1.09002 * 109.47411 * 267.48121 * 3 2 1 29 29 H 0.97000 * 119.99600 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47073 * 59.99768 * 15 13 4 31 31 H 1.09003 * 109.47074 * 299.99649 * 15 13 4 32 32 H 1.09011 * 109.53533 * 59.60357 * 18 16 15 33 33 H 1.08997 * 109.60830 * 299.40747 * 18 16 15 34 34 H 1.09003 * 109.59368 * 185.37293 * 19 18 16 35 35 H 1.08994 * 109.71709 * 64.99911 * 19 18 16 36 36 H 1.09009 * 113.63209 * 334.96409 * 21 20 19 37 37 H 1.08999 * 113.64065 * 203.99472 * 21 20 19 38 38 H 1.09005 * 113.59839 * 139.68168 * 22 21 20 39 39 H 1.08992 * 113.60394 * 270.54654 * 22 21 20 40 40 H 1.09001 * 113.63747 * 155.96247 * 23 20 19 41 41 H 1.08997 * 113.63296 * 24.98815 * 23 20 19 42 42 H 1.08995 * 109.52845 * 66.26956 * 24 20 19 43 43 H 1.08999 * 109.52656 * 186.47750 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.1656 -0.7425 5 6 3.4807 1.0407 -2.0629 6 1 4.1236 1.7759 -2.5241 7 6 3.0053 -0.0316 -2.8078 8 7 1.9247 -0.6720 -2.4218 9 14 3.9023 -0.5628 -4.3578 10 1 5.2939 -0.9526 -4.0155 11 1 3.1991 -1.7217 -4.9642 12 1 3.9277 0.5632 -5.3256 13 6 3.2413 2.3600 -0.1275 14 8 3.6456 3.3243 -0.7421 15 6 2.8603 2.4971 1.3241 16 6 3.0754 3.9438 1.7734 17 1 2.5230 4.6140 1.1147 18 6 2.5719 4.1114 3.2092 19 6 2.8031 5.5602 3.6556 20 6 4.2805 5.9030 3.4653 21 6 4.6574 7.2986 3.9762 22 6 4.9393 6.6351 5.3355 23 6 5.1883 5.3297 4.5602 24 6 4.7743 5.6150 2.0487 25 8 4.4675 4.2587 1.7115 26 1 -1.0503 -0.0001 0.0003 27 1 3.0098 -0.9108 -0.4742 28 1 3.0093 0.0460 1.0267 29 1 1.5931 -1.4207 -2.9416 30 1 3.4807 1.8337 1.9268 31 1 1.8115 2.2290 1.4514 32 1 3.1173 3.4355 3.8680 33 1 1.5072 3.8822 3.2525 34 1 2.5359 5.6658 4.7071 35 1 2.1915 6.2324 3.0538 36 1 3.8209 7.9973 3.9961 37 1 5.5457 7.7133 3.4998 38 1 5.8277 7.0227 5.8344 39 1 4.0689 6.5946 5.9903 40 1 6.2237 5.1991 4.2454 41 1 4.7785 4.4461 5.0493 42 1 4.2790 6.2858 1.3468 43 1 5.8525 5.7673 2.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890401298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = -19.474454 kcal Electronic energy + Delta-G solvation = -23911.611719 eV Core-core repulsion = 20537.611283 eV Total energy + Delta-G solvation = -3374.000436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49107 -40.38320 -38.18508 -36.91508 -34.32891 -33.83697 -32.97470 -31.79118 -28.93505 -28.07801 -26.63938 -26.51112 -25.05297 -23.64352 -21.95378 -20.66525 -19.63336 -19.19875 -18.37602 -17.79184 -17.47957 -16.64431 -16.51941 -16.44573 -16.07187 -15.80699 -15.39081 -14.90475 -14.57060 -14.35397 -14.11822 -13.97876 -13.66174 -13.48505 -13.46612 -13.16885 -12.90554 -12.78399 -12.51005 -12.37749 -12.17248 -12.02409 -11.98885 -11.81142 -11.39635 -11.12650 -11.05765 -11.02166 -10.89167 -10.60680 -10.25339 -10.03954 -9.76372 -8.28782 -5.89893 1.38434 1.41899 1.51570 1.96233 2.19428 2.35053 2.41108 2.88807 3.08321 3.20693 3.65957 3.69132 3.71100 3.88727 3.95661 3.97622 4.03628 4.17486 4.22838 4.34620 4.51335 4.52537 4.62182 4.69078 4.77162 4.78805 4.85256 4.88840 4.92050 4.96154 4.97980 5.08834 5.10177 5.14364 5.19935 5.38073 5.45401 5.49287 5.49913 5.62336 6.10499 6.44600 6.51136 7.17805 7.20690 7.47769 8.07506 8.69600 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027365 B = 0.003895 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.964035 B = 7187.113442 C = 7870.015428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.154 4.154 3 C 0.235 3.765 4 N -0.459 5.459 5 C -0.354 4.354 6 H 0.069 0.931 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.980 3.020 10 H -0.268 1.268 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.445 3.555 14 O -0.619 6.619 15 C -0.115 4.115 16 C 0.114 3.886 17 H 0.031 0.969 18 C -0.139 4.139 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.126 4.126 24 C 0.074 3.926 25 O -0.390 6.390 26 H 0.233 0.767 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.271 0.729 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 7.647 16.908 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.155 4.155 3 C 0.113 3.887 4 N -0.178 5.178 5 C -0.481 4.481 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.804 3.196 10 H -0.193 1.193 11 H -0.196 1.196 12 H -0.207 1.207 13 C 0.235 3.765 14 O -0.505 6.505 15 C -0.155 4.155 16 C 0.056 3.944 17 H 0.049 0.951 18 C -0.177 4.177 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.164 4.164 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.003 4.003 25 O -0.309 6.309 26 H 0.250 0.750 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.745 7.792 16.476 18.241 hybrid contribution -0.032 -0.219 -1.515 1.531 sum 0.712 7.573 14.961 16.784 Atomic orbital electron populations 1.25126 0.96294 1.00781 1.04028 1.23421 0.94932 0.99875 0.97309 1.18245 0.84747 0.90319 0.95434 1.43890 1.56795 1.07149 1.09920 1.19456 1.29606 1.11570 0.87492 0.91338 1.25915 0.95326 0.97082 1.01583 1.70162 1.18118 1.21540 1.40976 0.85215 0.78820 0.77666 0.77897 1.19309 1.19616 1.20699 1.20995 0.82555 0.82245 0.90664 1.90478 1.51996 1.39038 1.69022 1.21637 1.03543 0.97932 0.92380 1.21665 0.82710 0.94081 0.95948 0.95079 1.22172 1.02474 0.98324 0.94722 1.21360 0.93576 0.95418 1.02611 1.22263 0.96562 0.98760 0.94511 1.22864 1.01865 0.94677 0.97034 1.22816 1.02356 0.95555 0.95880 1.22858 0.99110 0.98060 0.96296 1.22597 1.00393 0.82855 0.94453 1.87979 1.24340 1.28714 1.89872 0.75026 0.89490 0.88432 0.91915 0.87799 0.87448 0.90148 0.89294 0.89006 0.91939 0.90692 0.89862 0.90622 0.89211 0.90663 0.91429 0.95041 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.55 19.25 74.32 1.43 -8.11 16 2 C -0.15 -6.73 10.75 31.12 0.33 -6.39 16 3 C 0.24 10.47 4.91 84.57 0.42 10.89 16 4 N -0.46 -24.24 2.60 -645.41 -1.68 -25.91 16 5 C -0.35 -20.66 9.28 84.04 0.78 -19.88 16 6 H 0.07 4.34 7.42 -2.91 -0.02 4.32 16 7 C 0.00 0.24 4.83 84.93 0.41 0.65 16 8 N -0.87 -46.29 9.59 21.66 0.21 -46.08 16 9 Si 0.98 43.26 29.60 68.60 2.03 45.29 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.45 22.84 7.44 87.66 0.65 23.49 16 14 O -0.62 -37.02 15.08 10.99 0.17 -36.86 16 15 C -0.12 -4.33 4.02 29.85 0.12 -4.21 16 16 C 0.11 3.97 2.13 30.62 0.07 4.03 16 17 H 0.03 1.24 7.96 -2.39 -0.02 1.22 16 18 C -0.14 -3.34 5.35 30.74 0.16 -3.17 16 19 C -0.09 -1.89 5.11 30.66 0.16 -1.74 16 20 C -0.12 -2.62 0.86 -52.09 -0.04 -2.67 16 21 C -0.13 -2.14 7.23 31.00 0.22 -1.92 16 22 C -0.13 -1.87 7.73 31.17 0.24 -1.63 16 23 C -0.13 -2.41 7.13 31.00 0.22 -2.19 16 24 C 0.07 2.20 6.02 71.90 0.43 2.63 16 25 O -0.39 -14.86 9.63 -134.94 -1.30 -16.16 16 26 H 0.23 7.00 7.80 -4.40 -0.03 6.96 16 27 H 0.09 4.13 6.60 -2.39 -0.02 4.11 16 28 H 0.10 3.52 6.70 -2.39 -0.02 3.50 16 29 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.10 3.45 7.42 -2.38 -0.02 3.44 16 31 H 0.11 3.67 7.49 -2.39 -0.02 3.65 16 32 H 0.08 1.80 7.67 -2.38 -0.02 1.78 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 1.45 7.34 -2.39 -0.02 1.43 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 37 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.09 1.12 7.64 -2.39 -0.02 1.10 16 40 H 0.07 1.52 8.03 -2.39 -0.02 1.50 16 41 H 0.07 1.29 7.62 -2.39 -0.02 1.27 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 2.55 8.04 -2.39 -0.02 2.53 16 Total: -1.00 -72.11 344.65 6.01 -66.09 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.98 Total: 23.84 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.60 Total: -10.21 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.47 Total: -71.99 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -1.13 Total: -53.02 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -72.11 6.01 -66.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.620 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds