Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47171 * 2 1 4 4 H 1.08997 * 109.47348 * 179.48201 * 3 2 1 5 5 C 1.50701 * 109.47357 * 59.47531 * 3 2 1 6 6 H 1.07998 * 120.00529 * 240.00389 * 5 3 2 7 7 C 1.37885 * 119.99534 * 60.00106 * 5 3 2 8 8 N 1.31516 * 119.99828 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00115 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46948 * 269.99784 * 9 7 5 11 11 H 1.48494 * 109.46893 * 30.00006 * 9 7 5 12 12 H 1.48497 * 109.46798 * 149.99683 * 9 7 5 13 13 N 1.46907 * 109.47065 * 299.47951 * 3 2 1 14 14 C 1.46895 * 110.99847 * 274.50185 * 13 3 2 15 15 C 1.50697 * 109.47173 * 174.90006 * 14 13 3 16 16 C 1.38391 * 119.84480 * 90.00212 * 15 14 13 17 17 C 1.37925 * 120.15190 * 179.97438 * 16 15 14 18 18 C 1.39646 * 119.84444 * 0.02562 * 17 16 15 19 19 C 1.47726 * 120.14733 * 179.97438 * 18 17 16 20 20 O 1.21470 * 120.00154 * 174.09279 * 19 18 17 21 21 O 1.34718 * 120.00301 * 354.09418 * 19 18 17 22 22 C 1.45195 * 117.00048 * 180.02562 * 21 19 18 23 23 C 1.39609 * 119.70573 * 359.97438 * 18 17 16 24 24 C 1.50696 * 120.07789 * 180.02562 * 23 18 17 25 25 C 1.37963 * 119.84115 * 359.72897 * 23 18 17 26 26 H 1.08994 * 109.47268 * 303.41709 * 1 2 3 27 27 H 1.09003 * 109.46868 * 63.41962 * 1 2 3 28 28 H 1.09005 * 109.47099 * 183.41165 * 1 2 3 29 29 H 1.08999 * 109.47860 * 239.99621 * 2 1 3 30 30 H 1.09004 * 109.47268 * 119.99927 * 2 1 3 31 31 H 0.97001 * 119.99557 * 180.02562 * 8 7 5 32 32 H 1.00894 * 111.00024 * 150.54864 * 13 3 2 33 33 H 1.08995 * 109.47218 * 294.90682 * 14 13 3 34 34 H 1.09006 * 109.47204 * 54.90729 * 14 13 3 35 35 H 1.08001 * 119.92389 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.07640 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.46744 * 179.97438 * 22 21 19 38 38 H 1.09004 * 109.47056 * 299.99466 * 22 21 19 39 39 H 1.08997 * 109.47673 * 59.99803 * 22 21 19 40 40 H 1.09001 * 109.47414 * 83.39638 * 24 23 18 41 41 H 1.09002 * 109.46794 * 203.40045 * 24 23 18 42 42 H 1.09002 * 109.47147 * 323.39025 * 24 23 18 43 43 H 1.08008 * 119.92462 * 180.29457 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0093 5 6 1.5270 2.1567 1.2239 6 1 0.9070 3.0345 1.1168 7 6 1.8494 1.6894 2.4805 8 7 1.4022 2.3130 3.5486 9 14 2.9224 0.1716 2.6657 10 1 2.0639 -1.0394 2.7072 11 1 3.8529 0.0794 1.5121 12 1 3.7033 0.2682 3.9250 13 7 1.5605 2.1314 -1.2057 14 6 2.4604 1.8917 -2.3418 15 6 1.8735 2.5070 -3.5860 16 6 2.1790 3.8156 -3.9171 17 6 1.6458 4.3849 -5.0546 18 6 0.7956 3.6378 -5.8726 19 6 0.2204 4.2411 -7.0923 20 8 -0.4309 3.5592 -7.8580 21 8 0.4181 5.5474 -7.3553 22 6 -0.1769 6.0725 -8.5712 23 6 0.4917 2.3183 -5.5327 24 6 -0.4243 1.5042 -6.4098 25 6 1.0369 1.7594 -4.3953 26 1 -0.3633 0.5659 0.8577 27 1 -0.3633 0.4599 -0.9191 28 1 -0.3633 -1.0259 0.0612 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6293 1.9844 4.4325 32 1 1.4471 3.1196 -1.0366 33 1 3.4317 2.3418 -2.1372 34 1 2.5811 0.8185 -2.4896 35 1 2.8363 4.3923 -3.2833 36 1 1.8853 5.4061 -5.3120 37 1 0.0577 7.1331 -8.6619 38 1 0.2229 5.5366 -9.4321 39 1 -1.2584 5.9420 -8.5322 40 1 0.1470 1.0760 -7.2334 41 1 -0.8718 0.7025 -5.8224 42 1 -1.2108 2.1455 -6.8078 43 1 0.8065 0.7371 -4.1336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893607566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -60.241899 kcal Electronic energy + Delta-G solvation = -22929.591984 eV Core-core repulsion = 19553.823739 eV Total energy + Delta-G solvation = -3375.768245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79792 -39.14634 -36.84988 -36.42858 -33.58947 -32.41339 -31.76763 -30.53966 -28.26239 -27.10835 -26.84226 -24.93278 -23.14775 -22.42331 -21.92831 -20.27017 -19.35855 -18.00064 -17.13027 -16.69689 -16.55112 -15.78091 -15.29678 -14.81429 -14.68711 -14.23539 -13.95142 -13.80378 -13.51670 -13.26133 -13.13400 -13.00920 -12.80602 -12.41443 -12.31926 -12.20943 -12.02724 -11.84865 -11.45481 -11.12536 -10.99963 -10.94188 -10.64976 -10.56397 -10.27010 -10.15199 -9.99978 -9.37832 -9.04312 -8.82622 -8.72139 -8.61128 -7.56121 -6.13366 -4.12559 0.66751 1.36997 2.45178 2.53997 3.24544 3.33269 3.35416 3.71555 4.35199 4.56192 4.74624 4.80753 4.85959 4.86242 4.92966 5.17844 5.22052 5.27416 5.33233 5.39974 5.55533 5.68624 5.72949 5.77179 5.93545 5.99425 6.08548 6.12923 6.18459 6.23162 6.25523 6.43638 6.52155 6.65034 6.68697 6.86213 6.88631 7.07640 7.19093 7.46023 7.56451 7.60924 7.83844 8.25792 8.55320 8.91136 9.48688 10.99386 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030600 B = 0.003165 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.824300 B = 8843.504127 C = 9228.356416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.186 3.814 4 H 0.001 0.999 5 C -0.515 4.515 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.298 1.298 13 N -0.668 5.668 14 C 0.086 3.914 15 C -0.020 4.020 16 C -0.136 4.136 17 C -0.057 4.057 18 C -0.146 4.146 19 C 0.510 3.490 20 O -0.506 6.506 21 O -0.357 6.357 22 C 0.037 3.963 23 C -0.018 4.018 24 C -0.122 4.122 25 C -0.115 4.115 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.020 0.980 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.342 0.658 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 3.206 -21.029 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.226 1.226 13 N -0.300 5.300 14 C -0.044 4.044 15 C -0.021 4.021 16 C -0.155 4.155 17 C -0.076 4.076 18 C -0.147 4.147 19 C 0.357 3.643 20 O -0.396 6.396 21 O -0.273 6.273 22 C -0.056 4.056 23 C -0.018 4.018 24 C -0.178 4.178 25 C -0.134 4.134 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.423 2.529 -21.238 21.392 hybrid contribution 1.248 -0.235 0.393 1.330 sum 0.826 2.294 -20.845 20.987 Atomic orbital electron populations 1.21475 0.95480 0.98289 1.03036 1.21751 0.97475 0.98084 0.97807 1.19594 0.93086 0.91414 0.88204 0.98104 1.21002 1.32552 1.13305 0.88417 0.90296 1.24891 0.95435 0.96722 0.95792 1.69886 1.45203 1.40364 0.98018 0.86869 0.80879 0.83791 0.76784 1.20351 1.19406 1.22560 1.60523 1.47895 1.16661 1.04907 1.21040 0.94004 1.00234 0.89074 1.20312 0.93574 0.93433 0.94799 1.21082 1.01858 0.95160 0.97373 1.21341 0.93809 0.99348 0.93053 1.18835 1.05098 0.95050 0.95736 1.21313 0.77316 0.80058 0.85624 1.90775 1.38270 1.61933 1.48624 1.86560 1.70701 1.26422 1.43659 1.23251 0.98635 0.99331 0.84428 1.19988 0.94998 0.91995 0.94830 1.21097 0.99020 0.99402 0.98299 1.20919 0.97819 1.00803 0.93827 0.91333 0.92664 0.96113 0.95053 0.94083 0.92559 0.83975 0.94646 0.90517 0.85230 0.84784 0.88088 0.91938 0.91868 0.90790 0.91818 0.89204 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.52 37.15 0.35 -2.24 16 2 C -0.11 -2.42 5.28 -26.73 -0.14 -2.56 16 3 C 0.19 4.16 1.89 -68.86 -0.13 4.03 16 4 H 0.00 0.03 6.91 -51.93 -0.36 -0.33 16 5 C -0.51 -13.69 7.83 -34.44 -0.27 -13.95 16 6 H 0.08 2.28 7.86 -52.49 -0.41 1.87 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.89 21.54 24.37 -169.99 -4.14 17.39 16 10 H -0.28 -6.61 6.87 56.52 0.39 -6.23 16 11 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 12 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 13 N -0.67 -12.66 5.59 -109.22 -0.61 -13.27 16 14 C 0.09 1.33 5.58 -4.98 -0.03 1.30 16 15 C -0.02 -0.28 5.44 -104.53 -0.57 -0.85 16 16 C -0.14 -1.70 9.68 -39.64 -0.38 -2.09 16 17 C -0.06 -0.68 9.62 -39.17 -0.38 -1.06 16 18 C -0.15 -1.89 5.87 -104.98 -0.62 -2.51 16 19 C 0.51 6.52 7.83 34.61 0.27 6.80 16 20 O -0.51 -7.11 13.13 -19.24 -0.25 -7.37 16 21 O -0.36 -3.91 9.84 -40.54 -0.40 -4.31 16 22 C 0.04 0.28 10.56 101.05 1.07 1.35 16 23 C -0.02 -0.23 5.91 -104.21 -0.62 -0.85 16 24 C -0.12 -1.43 8.74 36.00 0.31 -1.12 16 25 C -0.12 -1.54 9.31 -39.64 -0.37 -1.91 16 26 H 0.07 1.60 7.08 -51.93 -0.37 1.23 16 27 H 0.05 1.08 7.73 -51.93 -0.40 0.68 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.60 7.41 -51.93 -0.38 0.21 16 30 H 0.04 0.93 3.28 -51.93 -0.17 0.76 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.34 6.57 8.26 -39.29 -0.32 6.25 16 33 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.08 1.17 7.30 -51.93 -0.38 0.79 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.13 1.33 7.63 -52.48 -0.40 0.93 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.66 8.04 -51.93 -0.42 0.25 16 42 H 0.09 1.15 5.85 -51.93 -0.30 0.84 16 43 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -29.98 346.44 -7.48 -37.46 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.48 Total: 4.44 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.59 Total: -13.69 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.16 Total: -39.14 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.65 Total: -11.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.98 -7.48 -37.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.781 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds