Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47381 * 2 1 4 4 H 1.09001 * 109.46969 * 54.95451 * 3 2 1 5 5 C 1.50703 * 109.47460 * 174.95077 * 3 2 1 6 6 H 1.07998 * 119.99616 * 119.99901 * 5 3 2 7 7 C 1.37870 * 119.99796 * 300.00603 * 5 3 2 8 8 N 1.31511 * 120.00768 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47125 * 59.99860 * 9 7 5 11 11 H 1.48494 * 109.47237 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47046 * 299.99820 * 9 7 5 13 13 N 1.46903 * 109.47472 * 294.95423 * 3 2 1 14 14 C 1.46899 * 111.00039 * 153.71371 * 13 3 2 15 15 C 1.50699 * 109.47109 * 185.15363 * 14 13 3 16 16 C 1.38386 * 119.84897 * 90.00371 * 15 14 13 17 17 C 1.37922 * 120.15475 * 179.97438 * 16 15 14 18 18 C 1.39650 * 119.84763 * 0.02562 * 17 16 15 19 19 C 1.47722 * 120.15148 * 179.97438 * 18 17 16 20 20 O 1.21467 * 119.99936 * 173.71689 * 19 18 17 21 21 O 1.34709 * 119.99770 * 353.72357 * 19 18 17 22 22 C 1.45200 * 116.99798 * 179.97438 * 21 19 18 23 23 C 1.39605 * 119.69842 * 0.02562 * 18 17 16 24 24 C 1.50707 * 120.07770 * 180.02562 * 23 18 17 25 25 C 1.37967 * 119.84895 * 359.71675 * 23 18 17 26 26 H 1.08995 * 109.47126 * 305.07990 * 1 2 3 27 27 H 1.08998 * 109.47416 * 65.07938 * 1 2 3 28 28 H 1.08997 * 109.47304 * 185.08307 * 1 2 3 29 29 H 1.09004 * 109.47404 * 240.00342 * 2 1 3 30 30 H 1.08996 * 109.47634 * 120.00523 * 2 1 3 31 31 H 0.96988 * 120.00761 * 180.02562 * 8 7 5 32 32 H 1.00894 * 110.99718 * 277.67981 * 13 3 2 33 33 H 1.08991 * 109.47803 * 305.15928 * 14 13 3 34 34 H 1.09006 * 109.46671 * 65.16055 * 14 13 3 35 35 H 1.08006 * 119.92061 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.07458 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47669 * 59.99322 * 22 21 19 38 38 H 1.09005 * 109.47204 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.46932 * 299.99363 * 22 21 19 40 40 H 1.08999 * 109.47048 * 83.44498 * 24 23 18 41 41 H 1.08992 * 109.46870 * 203.44566 * 24 23 18 42 42 H 1.08999 * 109.46934 * 323.44669 * 24 23 18 43 43 H 1.08002 * 119.92887 * 180.29573 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9817 0.8414 5 6 3.5418 1.4443 0.1250 6 1 4.1477 1.8887 -0.6508 7 6 4.1422 0.8787 1.2297 8 7 3.4045 0.3379 2.1746 9 14 6.0039 0.8803 1.3844 10 1 6.4994 2.2802 1.3841 11 1 6.3957 0.2173 2.6540 12 1 6.5965 0.1453 0.2382 13 7 1.6524 2.0990 -1.2557 14 6 1.5439 3.5531 -1.0778 15 6 1.0239 4.1771 -2.3472 16 6 -0.3391 4.3299 -2.5314 17 6 -0.8219 4.9006 -3.6905 18 6 0.0682 5.3242 -4.6797 19 6 -0.4416 5.9359 -5.9240 20 8 0.3342 6.4066 -6.7314 21 8 -1.7668 5.9716 -6.1631 22 6 -2.1961 6.5883 -7.4055 23 6 1.4419 5.1661 -4.4878 24 6 2.4101 5.6207 -5.5494 25 6 1.9114 4.5984 -3.3212 26 1 -0.3633 0.5906 0.8410 27 1 -0.3634 0.4330 -0.9319 28 1 -0.3634 -1.0236 0.0910 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8269 -0.0597 2.9519 32 1 2.2987 1.8724 -1.9966 33 1 0.8574 3.7689 -0.2592 34 1 2.5262 3.9651 -0.8464 35 1 -1.0264 4.0015 -1.7657 36 1 -1.8859 5.0197 -3.8327 37 1 -1.7609 6.0502 -8.2476 38 1 -3.2833 6.5504 -7.4734 39 1 -1.8662 7.6270 -7.4285 40 1 2.5990 6.6882 -5.4357 41 1 3.3466 5.0729 -5.4455 42 1 1.9849 5.4299 -6.5347 43 1 2.9741 4.4798 -3.1693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893607567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -72.183443 kcal Electronic energy + Delta-G solvation = -22808.574532 eV Core-core repulsion = 19432.288462 eV Total energy + Delta-G solvation = -3376.286070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74375 -39.04868 -36.70020 -36.13704 -33.43666 -32.35792 -31.64542 -30.38659 -28.17439 -26.97356 -26.66052 -24.85788 -22.82745 -21.94306 -21.87361 -20.19470 -19.48889 -17.94207 -17.06305 -16.73442 -16.51583 -15.29797 -15.08684 -14.87662 -14.63528 -14.23282 -13.87527 -13.72365 -13.28707 -13.08694 -12.97627 -12.77316 -12.49812 -12.33664 -12.26314 -11.92925 -11.69588 -11.47722 -11.21034 -11.04365 -11.02052 -10.95720 -10.84354 -10.67225 -10.21125 -10.12056 -9.63597 -9.58147 -9.12597 -8.78552 -8.61311 -8.42195 -7.34155 -6.04244 -4.17673 0.75096 1.45424 2.51530 2.58599 3.25346 3.30990 3.33136 3.80981 4.35745 4.63041 4.82590 4.86353 4.90357 4.95237 5.02013 5.21567 5.26055 5.41285 5.45738 5.54659 5.72733 5.74997 5.83309 5.89780 6.02627 6.20211 6.28302 6.33186 6.37123 6.39337 6.48702 6.58487 6.68685 6.80074 6.97189 7.08912 7.14705 7.38351 7.53655 7.65638 7.72988 8.02776 8.07235 8.25812 8.57445 8.93919 9.50318 10.96050 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.003270 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.897454 B = 8561.691051 C = 9427.848479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.094 3.906 15 C -0.017 4.017 16 C -0.123 4.123 17 C -0.060 4.060 18 C -0.149 4.149 19 C 0.511 3.489 20 O -0.507 6.507 21 O -0.357 6.357 22 C 0.037 3.963 23 C -0.017 4.017 24 C -0.122 4.122 25 C -0.132 4.132 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.263 0.737 32 H 0.330 0.670 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 10.222 -13.335 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.036 4.036 15 C -0.018 4.018 16 C -0.141 4.141 17 C -0.078 4.078 18 C -0.150 4.150 19 C 0.357 3.643 20 O -0.397 6.397 21 O -0.273 6.273 22 C -0.056 4.056 23 C -0.018 4.018 24 C -0.178 4.178 25 C -0.150 4.150 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.642 10.156 -13.296 19.310 hybrid contribution 1.987 0.276 0.085 2.008 sum -7.654 10.431 -13.211 18.491 Atomic orbital electron populations 1.21688 0.98953 0.98361 1.00348 1.21495 0.92138 0.99091 1.01722 1.19183 0.92904 0.91276 0.85815 0.94901 1.21816 0.92684 1.38621 1.05660 0.92875 1.24921 0.97956 0.94883 0.95658 1.69855 1.34979 1.38015 1.09374 0.86713 0.85982 0.78218 0.77415 1.20374 1.21208 1.20252 1.60959 1.54947 1.04669 1.10509 1.20889 0.99555 0.90740 0.92366 1.20485 0.93358 0.92179 0.95788 1.21051 0.95293 0.99990 0.97794 1.21374 0.99486 0.94505 0.92416 1.18808 0.93648 1.08824 0.93740 1.21328 0.80332 0.76301 0.86305 1.90771 1.56778 1.44268 1.47925 1.86562 1.25478 1.73612 1.41697 1.23243 1.00651 0.97937 0.83815 1.19943 0.92203 0.94375 0.95246 1.21089 0.97185 1.01353 0.98150 1.20994 1.00307 1.00777 0.92948 0.94437 0.93468 0.95645 0.95062 0.89110 0.92746 0.85398 0.90745 0.93990 0.85037 0.84891 0.91923 0.88124 0.91954 0.90795 0.91940 0.89288 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.74 37.15 0.36 -2.36 16 2 C -0.11 -2.47 5.45 -26.73 -0.15 -2.61 16 3 C 0.22 5.11 1.98 -68.86 -0.14 4.97 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.27 8.49 -34.44 -0.29 -14.56 16 6 H 0.05 1.37 7.72 -52.49 -0.41 0.96 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.78 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.52 5.76 -109.22 -0.63 -14.15 16 14 C 0.09 1.64 5.63 -4.98 -0.03 1.61 16 15 C -0.02 -0.26 5.44 -104.53 -0.57 -0.83 16 16 C -0.12 -1.66 9.68 -39.64 -0.38 -2.05 16 17 C -0.06 -0.75 9.62 -39.17 -0.38 -1.13 16 18 C -0.15 -2.02 5.87 -104.98 -0.62 -2.63 16 19 C 0.51 6.76 7.83 34.61 0.27 7.03 16 20 O -0.51 -7.36 13.14 -19.24 -0.25 -7.61 16 21 O -0.36 -4.03 9.84 -40.52 -0.40 -4.43 16 22 C 0.04 0.29 10.56 101.05 1.07 1.36 16 23 C -0.02 -0.24 5.92 -104.21 -0.62 -0.85 16 24 C -0.12 -1.50 8.73 36.01 0.31 -1.19 16 25 C -0.13 -1.88 9.31 -39.64 -0.37 -2.24 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.90 7.90 -51.93 -0.41 0.49 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.33 6.58 8.44 -39.29 -0.33 6.25 16 33 H 0.07 1.29 7.87 -51.93 -0.41 0.89 16 34 H 0.04 0.77 8.06 -51.93 -0.42 0.36 16 35 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.13 1.40 7.63 -52.49 -0.40 1.00 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 42 H 0.09 1.17 5.85 -51.93 -0.30 0.87 16 43 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -28.26 356.99 -8.65 -36.91 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.74 Total: 5.78 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.61 Total: -13.76 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.00 Total: -37.93 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.65 Total: -12.04 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.26 -8.65 -36.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.271 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds