Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47381 * 2 1 4 4 H 1.09001 * 109.46969 * 54.95451 * 3 2 1 5 5 C 1.50703 * 109.47460 * 174.95077 * 3 2 1 6 6 H 1.07998 * 119.99616 * 119.99901 * 5 3 2 7 7 C 1.37870 * 119.99796 * 300.00603 * 5 3 2 8 8 N 1.31511 * 120.00768 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47125 * 59.99860 * 9 7 5 11 11 H 1.48494 * 109.47237 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47046 * 299.99820 * 9 7 5 13 13 N 1.46903 * 109.47472 * 294.95423 * 3 2 1 14 14 C 1.46899 * 111.00039 * 153.71371 * 13 3 2 15 15 C 1.50699 * 109.47109 * 185.15363 * 14 13 3 16 16 C 1.38386 * 119.84897 * 90.00371 * 15 14 13 17 17 C 1.37922 * 120.15475 * 179.97438 * 16 15 14 18 18 C 1.39650 * 119.84763 * 0.02562 * 17 16 15 19 19 C 1.47722 * 120.15148 * 179.97438 * 18 17 16 20 20 O 1.21467 * 119.99936 * 173.71689 * 19 18 17 21 21 O 1.34709 * 119.99770 * 353.72357 * 19 18 17 22 22 C 1.45200 * 116.99798 * 179.97438 * 21 19 18 23 23 C 1.39605 * 119.69842 * 0.02562 * 18 17 16 24 24 C 1.50707 * 120.07770 * 180.02562 * 23 18 17 25 25 C 1.37967 * 119.84895 * 359.71675 * 23 18 17 26 26 H 1.08995 * 109.47126 * 305.07990 * 1 2 3 27 27 H 1.08998 * 109.47416 * 65.07938 * 1 2 3 28 28 H 1.08997 * 109.47304 * 185.08307 * 1 2 3 29 29 H 1.09004 * 109.47404 * 240.00342 * 2 1 3 30 30 H 1.08996 * 109.47634 * 120.00523 * 2 1 3 31 31 H 0.96988 * 120.00761 * 180.02562 * 8 7 5 32 32 H 1.00894 * 110.99718 * 277.67981 * 13 3 2 33 33 H 1.08991 * 109.47803 * 305.15928 * 14 13 3 34 34 H 1.09006 * 109.46671 * 65.16055 * 14 13 3 35 35 H 1.08006 * 119.92061 * 359.97438 * 16 15 14 36 36 H 1.08001 * 120.07458 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47669 * 59.99322 * 22 21 19 38 38 H 1.09005 * 109.47204 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.46932 * 299.99363 * 22 21 19 40 40 H 1.08999 * 109.47048 * 83.44498 * 24 23 18 41 41 H 1.08992 * 109.46870 * 203.44566 * 24 23 18 42 42 H 1.08999 * 109.46934 * 323.44669 * 24 23 18 43 43 H 1.08002 * 119.92887 * 180.29573 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9817 0.8414 5 6 3.5418 1.4443 0.1250 6 1 4.1477 1.8887 -0.6508 7 6 4.1422 0.8787 1.2297 8 7 3.4045 0.3379 2.1746 9 14 6.0039 0.8803 1.3844 10 1 6.4994 2.2802 1.3841 11 1 6.3957 0.2173 2.6540 12 1 6.5965 0.1453 0.2382 13 7 1.6524 2.0990 -1.2557 14 6 1.5439 3.5531 -1.0778 15 6 1.0239 4.1771 -2.3472 16 6 -0.3391 4.3299 -2.5314 17 6 -0.8219 4.9006 -3.6905 18 6 0.0682 5.3242 -4.6797 19 6 -0.4416 5.9359 -5.9240 20 8 0.3342 6.4066 -6.7314 21 8 -1.7668 5.9716 -6.1631 22 6 -2.1961 6.5883 -7.4055 23 6 1.4419 5.1661 -4.4878 24 6 2.4101 5.6207 -5.5494 25 6 1.9114 4.5984 -3.3212 26 1 -0.3633 0.5906 0.8410 27 1 -0.3634 0.4330 -0.9319 28 1 -0.3634 -1.0236 0.0910 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8269 -0.0597 2.9519 32 1 2.2987 1.8724 -1.9966 33 1 0.8574 3.7689 -0.2592 34 1 2.5262 3.9651 -0.8464 35 1 -1.0264 4.0015 -1.7657 36 1 -1.8859 5.0197 -3.8327 37 1 -1.7609 6.0502 -8.2476 38 1 -3.2833 6.5504 -7.4734 39 1 -1.8662 7.6270 -7.4285 40 1 2.5990 6.6882 -5.4357 41 1 3.3466 5.0729 -5.4455 42 1 1.9849 5.4299 -6.5347 43 1 2.9741 4.4798 -3.1693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893607567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -86.633750 kcal Electronic energy + Delta-G solvation = -22809.201144 eV Core-core repulsion = 19432.288462 eV Total energy + Delta-G solvation = -3376.912682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72890 -40.11749 -38.00343 -37.47907 -34.96024 -33.66043 -33.22538 -31.81566 -29.12466 -28.42797 -27.76778 -26.34696 -24.48098 -23.19842 -22.88668 -21.50782 -21.13964 -18.92484 -18.70182 -17.99388 -17.41103 -16.82390 -16.45629 -16.28965 -15.78194 -15.56051 -15.24610 -14.90046 -14.64665 -14.30345 -14.11612 -13.96490 -13.90803 -13.63366 -13.23946 -13.13768 -13.06205 -12.95760 -12.83602 -12.73148 -12.52999 -12.41518 -12.09888 -11.93489 -11.77641 -11.49396 -11.41097 -11.12314 -10.99404 -10.44926 -9.91470 -9.68654 -9.05647 -8.04895 -6.26713 -0.32389 0.40102 1.40231 1.41352 1.47927 1.48414 1.71651 2.40900 2.72676 3.15639 3.60438 3.77480 3.82282 3.90548 4.07218 4.30839 4.32445 4.36198 4.38020 4.59397 4.65598 4.71084 4.73602 4.77876 4.78593 4.80243 4.93315 4.96818 5.00298 5.16482 5.20346 5.27496 5.32132 5.45430 5.52929 5.55783 5.63253 5.67643 5.78594 5.89808 6.11076 6.20440 6.36996 6.69432 6.78620 7.00528 7.44803 8.91715 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.003270 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.897454 B = 8561.691051 C = 9427.848479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.223 3.777 4 H 0.004 0.996 5 C -0.561 4.561 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.672 5.672 14 C 0.101 3.899 15 C -0.029 4.029 16 C -0.124 4.124 17 C -0.050 4.050 18 C -0.156 4.156 19 C 0.511 3.489 20 O -0.524 6.524 21 O -0.359 6.359 22 C 0.030 3.970 23 C -0.025 4.025 24 C -0.117 4.117 25 C -0.136 4.136 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.262 0.738 32 H 0.330 0.670 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.143 0.857 36 H 0.157 0.843 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 10.806 -14.628 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.022 0.978 5 C -0.601 4.601 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.301 5.301 14 C -0.029 4.029 15 C -0.030 4.030 16 C -0.142 4.142 17 C -0.068 4.068 18 C -0.157 4.157 19 C 0.359 3.641 20 O -0.416 6.416 21 O -0.275 6.275 22 C -0.063 4.063 23 C -0.025 4.025 24 C -0.173 4.173 25 C -0.154 4.154 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.529 10.751 -14.606 20.971 hybrid contribution 2.180 0.154 0.413 2.224 sum -8.349 10.905 -14.193 19.750 Atomic orbital electron populations 1.21545 0.96296 0.99541 1.00722 1.21363 0.94501 0.98334 0.99962 1.18950 0.91591 0.91552 0.86450 0.97757 1.22159 0.94119 1.38210 1.05572 0.93051 1.25628 1.01892 0.94780 0.95552 1.69982 1.36431 1.38718 1.09749 0.85779 0.81290 0.78221 0.77334 1.19986 1.21044 1.19830 1.60870 1.54311 1.06211 1.08684 1.20797 0.98920 0.89207 0.93940 1.20249 0.94267 0.93514 0.94952 1.21178 0.94729 0.99824 0.98465 1.21574 1.00563 0.93248 0.91435 1.19032 0.93828 1.08580 0.94290 1.21268 0.80966 0.75958 0.85934 1.90764 1.57384 1.45052 1.48409 1.86542 1.24102 1.73607 1.43240 1.23578 1.02601 0.97759 0.82384 1.20096 0.92813 0.94299 0.95281 1.21052 0.97326 1.01654 0.97250 1.21019 1.00402 1.00925 0.93071 0.94840 0.92344 0.93916 0.95472 0.92096 0.92869 0.85364 0.90981 0.95425 0.83961 0.82505 0.91896 0.84888 0.91772 0.90490 0.90867 0.90033 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.74 71.98 0.70 -4.13 16 2 C -0.10 -4.82 5.45 30.59 0.17 -4.66 16 3 C 0.22 10.71 1.98 44.17 0.09 10.79 16 4 H 0.00 0.24 7.70 -2.39 -0.02 0.22 16 5 C -0.56 -29.53 8.49 25.60 0.22 -29.32 16 6 H 0.05 2.66 7.72 -2.91 -0.02 2.63 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -51.06 11.29 21.44 0.24 -50.82 16 9 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.67 -26.62 5.76 -499.46 -2.88 -29.49 16 14 C 0.10 3.51 5.63 85.56 0.48 3.99 16 15 C -0.03 -0.85 5.44 -19.80 -0.11 -0.96 16 16 C -0.12 -3.14 9.68 22.23 0.22 -2.93 16 17 C -0.05 -1.15 9.62 22.54 0.22 -0.93 16 18 C -0.16 -3.97 5.87 -20.10 -0.12 -4.09 16 19 C 0.51 12.69 7.83 70.33 0.55 13.24 16 20 O -0.52 -14.57 13.14 19.94 0.26 -14.31 16 21 O -0.36 -7.27 9.84 -56.19 -0.55 -7.82 16 22 C 0.03 0.39 10.56 113.37 1.20 1.59 16 23 C -0.02 -0.65 5.92 -19.60 -0.12 -0.76 16 24 C -0.12 -2.77 8.73 71.24 0.62 -2.15 16 25 C -0.14 -3.76 9.31 22.23 0.21 -3.56 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 2.13 7.90 -2.39 -0.02 2.12 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 3.24 5.95 -2.39 -0.01 3.22 16 31 H 0.26 14.09 8.31 -92.72 -0.77 13.32 16 32 H 0.33 13.13 8.44 -89.70 -0.76 12.37 16 33 H 0.07 2.52 7.87 -2.39 -0.02 2.51 16 34 H 0.03 1.04 8.06 -2.38 -0.02 1.02 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.16 2.81 7.63 -2.91 -0.02 2.79 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 42 H 0.08 2.08 5.85 -2.39 -0.01 2.07 16 43 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -60.07 356.99 4.12 -55.95 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.24 Total: 24.11 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.77 Total: -22.24 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.63 Total: -80.31 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.29 Total: -22.13 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -60.07 4.12 -55.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893607567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.684 kcal (2) G-P(sol) polarization free energy of solvation -60.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds