Wall clock time and date at job start Tue Mar 31 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.38281 * 119.94694 * 264.99850 * 17 16 14 19 19 C 1.38124 * 120.05521 * 179.97438 * 18 17 16 20 20 C 1.38753 * 119.94615 * 0.02948 * 19 18 17 21 21 O 1.35901 * 120.05820 * 180.02562 * 20 19 18 22 22 C 1.42894 * 116.99917 * 359.97438 * 21 20 19 23 23 C 1.38718 * 119.88744 * 359.97438 * 20 19 18 24 24 C 1.38166 * 119.94214 * 359.70832 * 23 20 19 25 25 C 1.50691 * 119.97357 * 180.31125 * 24 23 20 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 34 34 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 35 35 H 1.07996 * 119.97473 * 0.02562 * 18 17 16 36 36 H 1.08004 * 120.02827 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47449 * 59.99711 * 22 21 20 38 38 H 1.09004 * 109.47298 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47483 * 299.99774 * 22 21 20 40 40 H 1.07994 * 120.02490 * 180.02562 * 23 20 19 41 41 H 1.08996 * 109.47482 * 270.25780 * 25 24 23 42 42 H 1.09007 * 109.46948 * 30.25641 * 25 24 23 43 43 H 1.09003 * 109.47379 * 150.25075 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -1.5528 5.2061 2.1582 19 6 -2.8327 5.7111 2.0362 20 6 -3.9263 4.8930 2.2808 21 8 -5.1865 5.3874 2.1610 22 6 -5.3118 6.7589 1.7800 23 6 -3.7312 3.5693 2.6468 24 6 -2.4491 3.0672 2.7610 25 6 -2.2365 1.6274 3.1518 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6129 3.4685 34 1 0.7277 4.1529 2.8680 35 1 -0.7013 5.8424 1.9676 36 1 -2.9820 6.7420 1.7508 37 1 -4.8442 6.9101 0.8071 38 1 -6.3673 7.0249 1.7215 39 1 -4.8196 7.3884 2.5214 40 1 -4.5809 2.9305 2.8373 41 1 -2.1717 1.5512 4.2371 42 1 -3.0731 1.0267 2.7946 43 1 -1.3111 1.2628 2.7060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935400632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:10 Heat of formation + Delta-G solvation = -65.494712 kcal Electronic energy + Delta-G solvation = -23437.598608 eV Core-core repulsion = 20061.602584 eV Total energy + Delta-G solvation = -3375.996024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28817 -39.05544 -37.56266 -34.98012 -32.58535 -32.36684 -31.97569 -30.77944 -28.58693 -27.17617 -26.56308 -25.88729 -23.02835 -22.16327 -21.02166 -19.92751 -19.23895 -17.71806 -17.06194 -16.50464 -15.86841 -15.74250 -15.39742 -14.93757 -14.79720 -14.18379 -14.05360 -13.68982 -13.44397 -13.20716 -12.85800 -12.68377 -12.38844 -12.17750 -12.15298 -11.90499 -11.59752 -11.35446 -11.24868 -11.15984 -10.95436 -10.83706 -10.79770 -10.68851 -10.29953 -10.12256 -9.59649 -9.03517 -8.92394 -8.65832 -8.48081 -7.93605 -7.75993 -6.10909 -4.20259 1.44962 1.53443 3.23257 3.24333 3.31458 3.33338 3.49104 3.75881 4.25452 4.48132 4.79358 4.86674 4.97029 5.00060 5.02288 5.20189 5.28496 5.32176 5.39008 5.41046 5.64932 5.68157 5.75303 5.77074 5.88648 6.04543 6.22263 6.38206 6.41800 6.47161 6.52507 6.69814 6.78757 6.86599 7.07261 7.23887 7.40779 7.42202 7.51358 7.64538 7.77156 7.93599 8.21032 8.72832 8.81217 9.21728 9.47726 10.94295 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028533 B = 0.003416 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.082776 B = 8195.290068 C = 8467.169438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.501 3.499 15 O -0.539 6.539 16 C -0.105 4.105 17 C -0.089 4.089 18 C -0.065 4.065 19 C -0.213 4.213 20 C 0.122 3.878 21 O -0.321 6.321 22 C 0.029 3.971 23 C -0.153 4.153 24 C -0.028 4.028 25 C -0.118 4.118 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 8.468 11.755 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.285 3.715 15 O -0.417 6.417 16 C -0.146 4.146 17 C -0.090 4.090 18 C -0.083 4.083 19 C -0.231 4.231 20 C 0.077 3.923 21 O -0.235 6.235 22 C -0.066 4.066 23 C -0.171 4.171 24 C -0.028 4.028 25 C -0.175 4.175 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.145 0.855 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.298 8.241 10.890 18.378 hybrid contribution 1.460 0.293 0.048 1.490 sum -10.838 8.534 10.938 17.605 Atomic orbital electron populations 1.21853 0.98326 0.97916 1.01322 1.21926 0.92614 0.99890 1.02162 1.18742 0.94035 0.89122 0.81161 0.93451 1.21247 0.90836 1.38900 1.06207 0.92150 1.24893 0.98524 0.94887 0.95422 1.69900 1.35065 1.37661 1.09329 0.86474 0.85007 0.78409 0.77355 1.20574 1.21114 1.19893 1.46508 1.14720 1.56338 1.18475 1.20239 0.82748 0.79535 0.88973 1.90693 1.51263 1.59306 1.40396 1.20723 0.94431 1.01395 0.98002 1.19113 0.93781 0.93576 1.02516 1.20747 0.96309 0.94884 0.96392 1.21085 0.92678 1.00146 1.09222 1.18935 0.83176 0.93268 0.96910 1.86034 1.25267 1.27835 1.84357 1.23006 1.03210 0.80615 0.99817 1.20173 0.97089 0.93053 1.06807 1.19456 0.91564 0.95622 0.96178 1.20871 1.03546 0.91924 1.01123 0.93241 0.94098 0.95992 0.95125 0.88422 0.92606 0.78099 0.88680 0.88839 0.85947 0.85827 0.92666 0.88537 0.92841 0.85527 0.91088 0.91340 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.07 5.45 -26.74 -0.15 -3.22 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.72 11.30 55.43 0.63 -24.09 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -14.32 5.02 -54.94 -0.28 -14.59 16 14 C 0.50 9.56 5.59 -10.99 -0.06 9.50 16 15 O -0.54 -12.39 13.17 5.56 0.07 -12.32 16 16 C -0.11 -1.49 5.15 -29.04 -0.15 -1.64 16 17 C -0.09 -1.33 4.37 -104.60 -0.46 -1.78 16 18 C -0.07 -0.92 9.67 -39.61 -0.38 -1.30 16 19 C -0.21 -2.81 9.04 -39.43 -0.36 -3.17 16 20 C 0.12 1.70 6.69 -39.21 -0.26 1.44 16 21 O -0.32 -4.07 10.50 -19.43 -0.20 -4.27 16 22 C 0.03 0.24 9.81 101.05 0.99 1.23 16 23 C -0.15 -2.16 9.64 -39.43 -0.38 -2.54 16 24 C -0.03 -0.41 5.88 -104.65 -0.62 -1.02 16 25 C -0.12 -1.51 9.21 36.00 0.33 -1.18 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.04 0.86 4.82 -51.93 -0.25 0.61 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.70 8.54 -40.82 -0.35 6.35 16 33 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 34 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.12 1.32 6.30 -52.48 -0.33 0.99 16 37 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 40 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.82 8.09 -51.92 -0.42 0.40 16 43 H 0.07 1.08 5.31 -51.93 -0.28 0.80 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -31.47 345.65 -7.70 -39.17 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.39 Total: 7.79 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -1.72 Total: -12.41 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.35 Total: -38.69 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.13 Total: -16.59 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.47 -7.70 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935400632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.321 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds