Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.38281 * 119.94694 * 264.99850 * 17 16 14 19 19 C 1.38124 * 120.05521 * 179.97438 * 18 17 16 20 20 C 1.38753 * 119.94615 * 0.02948 * 19 18 17 21 21 O 1.35901 * 120.05820 * 180.02562 * 20 19 18 22 22 C 1.42894 * 116.99917 * 359.97438 * 21 20 19 23 23 C 1.38718 * 119.88744 * 359.97438 * 20 19 18 24 24 C 1.38166 * 119.94214 * 359.70832 * 23 20 19 25 25 C 1.50691 * 119.97357 * 180.31125 * 24 23 20 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 34 34 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 35 35 H 1.07996 * 119.97473 * 0.02562 * 18 17 16 36 36 H 1.08004 * 120.02827 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47449 * 59.99711 * 22 21 20 38 38 H 1.09004 * 109.47298 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47483 * 299.99774 * 22 21 20 40 40 H 1.07994 * 120.02490 * 180.02562 * 23 20 19 41 41 H 1.08996 * 109.47482 * 270.25780 * 25 24 23 42 42 H 1.09007 * 109.46948 * 30.25641 * 25 24 23 43 43 H 1.09003 * 109.47379 * 150.25075 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -1.5528 5.2061 2.1582 19 6 -2.8327 5.7111 2.0362 20 6 -3.9263 4.8930 2.2808 21 8 -5.1865 5.3874 2.1610 22 6 -5.3118 6.7589 1.7800 23 6 -3.7312 3.5693 2.6468 24 6 -2.4491 3.0672 2.7610 25 6 -2.2365 1.6274 3.1518 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6129 3.4685 34 1 0.7277 4.1529 2.8680 35 1 -0.7013 5.8424 1.9676 36 1 -2.9820 6.7420 1.7508 37 1 -4.8442 6.9101 0.8071 38 1 -6.3673 7.0249 1.7215 39 1 -4.8196 7.3884 2.5214 40 1 -4.5809 2.9305 2.8373 41 1 -2.1717 1.5512 4.2371 42 1 -3.0731 1.0267 2.7946 43 1 -1.3111 1.2628 2.7060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935400632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = -84.964309 kcal Electronic energy + Delta-G solvation = -23438.442873 eV Core-core repulsion = 20061.602584 eV Total energy + Delta-G solvation = -3376.840290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37020 -40.45322 -38.67188 -36.80542 -34.24929 -33.60001 -33.29379 -32.42937 -29.66278 -28.84558 -27.43701 -27.15087 -24.91600 -23.29015 -22.35422 -21.40534 -20.91242 -18.84418 -18.64452 -17.55007 -17.37479 -17.16958 -16.61245 -16.37762 -16.21249 -15.75143 -15.17071 -14.78722 -14.72352 -14.52118 -14.25719 -14.14627 -13.85510 -13.51248 -13.16841 -13.10576 -13.02641 -12.89154 -12.81005 -12.66193 -12.57415 -12.30788 -12.14191 -11.93733 -11.77460 -11.66821 -11.52502 -11.01217 -10.59921 -10.44966 -9.68768 -9.53198 -8.98522 -8.13792 -6.31002 0.41641 0.46725 1.45376 1.45953 1.56230 1.99329 2.37399 2.39744 2.62166 3.01215 3.15712 3.80116 3.84905 3.98901 4.21512 4.29654 4.35013 4.39226 4.41618 4.45443 4.52717 4.59495 4.64825 4.69591 4.75330 4.79632 4.82498 4.88644 5.05566 5.10314 5.23284 5.29405 5.38115 5.44405 5.50145 5.60138 5.69529 5.73956 5.84663 5.86856 5.99578 6.21544 6.48113 6.78732 7.11343 7.37118 7.72191 8.91250 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028533 B = 0.003416 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.082776 B = 8195.290068 C = 8467.169438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.499 3.501 15 O -0.581 6.581 16 C -0.091 4.091 17 C -0.111 4.111 18 C -0.076 4.076 19 C -0.218 4.218 20 C 0.114 3.886 21 O -0.336 6.336 22 C 0.019 3.981 23 C -0.170 4.170 24 C -0.039 4.039 25 C -0.116 4.116 26 H 0.019 0.981 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.263 0.737 32 H 0.403 0.597 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.057 0.943 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.135 0.865 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 9.306 13.725 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.359 5.359 14 C 0.287 3.713 15 O -0.462 6.462 16 C -0.131 4.131 17 C -0.112 4.112 18 C -0.094 4.094 19 C -0.237 4.237 20 C 0.069 3.931 21 O -0.250 6.250 22 C -0.075 4.075 23 C -0.189 4.189 24 C -0.039 4.039 25 C -0.172 4.172 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.899 9.099 12.906 19.772 hybrid contribution 1.217 0.108 -0.588 1.356 sum -10.682 9.206 12.318 18.724 Atomic orbital electron populations 1.21688 0.96970 0.98918 1.00390 1.21769 0.93722 0.99297 1.01127 1.18284 0.93375 0.89061 0.81628 0.98839 1.21615 0.91626 1.38630 1.06550 0.90985 1.25779 1.03201 0.94527 0.95116 1.70064 1.36985 1.38540 1.09878 0.85396 0.79317 0.78878 0.77039 1.19715 1.21481 1.18821 1.46276 1.15788 1.56405 1.17416 1.21092 0.81527 0.78493 0.90211 1.90681 1.52332 1.60673 1.42484 1.20676 0.94672 1.02351 0.95376 1.19292 0.94085 0.94153 1.03671 1.21038 0.97212 0.95064 0.96119 1.21356 0.92244 1.01263 1.08788 1.19138 0.83953 0.93463 0.96521 1.86018 1.24652 1.30035 1.84311 1.23317 1.05125 0.78843 1.00240 1.20404 0.97446 0.93690 1.07332 1.19717 0.91726 0.96394 0.96090 1.20881 1.02647 0.90927 1.02751 0.96127 0.93026 0.93891 0.93980 0.91404 0.92743 0.76183 0.85979 0.86163 0.84637 0.83589 0.92478 0.86145 0.91460 0.84682 0.88400 0.91077 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 14.22 2.24 44.24 0.10 14.32 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.40 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.68 11.30 21.45 0.24 -52.44 16 9 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 13 N -0.71 -28.13 5.02 -446.11 -2.24 -30.37 16 14 C 0.50 18.79 5.59 87.66 0.49 19.28 16 15 O -0.58 -27.22 13.17 -3.02 -0.04 -27.26 16 16 C -0.09 -2.39 5.15 29.10 0.15 -2.24 16 17 C -0.11 -3.16 4.37 -19.85 -0.09 -3.25 16 18 C -0.08 -2.04 9.67 22.25 0.22 -1.83 16 19 C -0.22 -5.47 9.04 22.37 0.20 -5.27 16 20 C 0.11 3.09 6.69 22.51 0.15 3.24 16 21 O -0.34 -8.12 10.50 -92.43 -0.97 -9.09 16 22 C 0.02 0.28 9.81 113.37 1.11 1.40 16 23 C -0.17 -4.71 9.64 22.37 0.22 -4.49 16 24 C -0.04 -1.09 5.88 -19.88 -0.12 -1.21 16 25 C -0.12 -2.78 9.21 71.23 0.66 -2.13 16 26 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 27 H 0.05 2.19 4.82 -2.39 -0.01 2.18 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 3.77 5.95 -2.39 -0.01 3.75 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.40 13.27 8.54 -92.71 -0.79 12.48 16 33 H 0.12 2.54 7.00 -2.39 -0.02 2.52 16 34 H 0.12 2.51 8.05 -2.39 -0.02 2.49 16 35 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16 37 H 0.06 0.83 7.66 -2.39 -0.02 0.82 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 40 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.64 8.09 -2.38 -0.02 1.62 16 43 H 0.06 1.57 5.31 -2.39 -0.01 1.56 16 Total: -1.00 -70.05 345.65 3.78 -66.26 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.23 Total: 28.95 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.54 Total: -20.04 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -2.00 Total: -82.80 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.01 Total: -36.35 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.05 3.78 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935400632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.702 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds