Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48494 * 109.47013 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21278 * 119.99962 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.38286 * 119.94518 * 264.72900 * 17 16 14 19 19 C 1.38126 * 120.05477 * 179.72418 * 18 17 16 20 20 C 1.38756 * 119.94159 * 0.57056 * 19 18 17 21 21 O 1.35902 * 120.05203 * 179.68428 * 20 19 18 22 22 C 1.42899 * 117.00313 * 0.02562 * 21 20 19 23 23 C 1.38712 * 119.88825 * 359.70319 * 20 19 18 24 24 C 1.38166 * 119.94521 * 0.02562 * 23 20 19 25 25 C 1.50696 * 119.97114 * 180.02562 * 24 23 20 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97005 * 120.00373 * 264.99451 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.09004 * 109.46514 * 60.00019 * 16 14 13 35 35 H 1.08001 * 119.96937 * 359.97438 * 18 17 16 36 36 H 1.07998 * 120.02514 * 180.25388 * 19 18 17 37 37 H 1.09004 * 109.46683 * 300.00142 * 22 21 20 38 38 H 1.09001 * 109.46944 * 59.99814 * 22 21 20 39 39 H 1.08997 * 109.46936 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.02435 * 180.02562 * 23 20 19 41 41 H 1.08996 * 109.47118 * 270.01690 * 25 24 23 42 42 H 1.08998 * 109.47148 * 30.01754 * 25 24 23 43 43 H 1.08998 * 109.47106 * 150.02104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3344 2.6299 -0.4675 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8751 -2.5735 18 6 -2.4030 3.1298 -3.0299 19 6 -3.6872 3.6272 -2.9228 20 6 -3.9003 4.8808 -2.3675 21 8 -5.1622 5.3750 -2.2669 22 6 -6.2229 4.5497 -2.7526 23 6 -2.8231 5.6288 -1.9156 24 6 -1.5410 5.1244 -2.0199 25 6 -0.3703 5.9363 -1.5286 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2955 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1092 2.5999 -3.4965 35 1 -2.2361 2.1563 -3.4668 36 1 -4.5241 3.0429 -3.2757 37 1 -6.0706 4.3490 -3.8131 38 1 -6.2321 3.6088 -2.2023 39 1 -7.1748 5.0620 -2.6131 40 1 -2.9864 6.6046 -1.4827 41 1 0.0047 6.5607 -2.3395 42 1 -0.6891 6.5692 -0.7004 43 1 0.4202 5.2663 -1.1906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935400634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -66.035210 kcal Electronic energy + Delta-G solvation = -23477.987300 eV Core-core repulsion = 20101.967837 eV Total energy + Delta-G solvation = -3376.019462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36355 -39.19960 -37.67561 -35.16680 -32.67776 -32.45120 -32.12967 -31.18044 -28.69838 -27.33567 -26.61061 -26.00162 -22.51990 -22.17677 -21.16820 -20.09486 -19.44111 -17.80492 -17.73981 -16.57664 -16.21930 -15.82189 -15.68254 -15.15910 -14.68366 -14.11546 -13.98179 -13.72302 -13.45413 -13.26306 -12.99342 -12.67191 -12.55127 -12.41580 -12.23894 -12.09634 -11.99000 -11.86126 -11.42842 -11.22094 -10.92554 -10.78631 -10.75837 -10.67475 -10.41373 -9.84794 -9.76627 -9.20035 -9.09304 -8.72620 -8.24624 -8.02875 -8.01474 -6.60512 -4.19445 1.38013 1.46091 3.17405 3.32135 3.41943 3.46740 3.62080 3.67976 4.22684 4.44908 4.72632 4.79143 4.89469 4.93973 4.96365 5.08546 5.22670 5.25967 5.31288 5.35010 5.55002 5.59606 5.66642 5.70127 5.81901 5.99898 6.09946 6.11823 6.16832 6.31187 6.32844 6.41225 6.71061 6.72845 6.79640 6.82304 7.00176 7.08575 7.35642 7.39639 7.47623 7.71339 8.25229 8.54308 8.72953 9.05746 9.45286 10.77109 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.003703 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.422184 B = 7558.874192 C = 7718.885115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.251 3.749 4 H 0.039 0.961 5 C -0.628 4.628 6 H 0.062 0.938 7 C 0.049 3.951 8 N -0.887 5.887 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.540 6.540 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.066 4.066 19 C -0.212 4.212 20 C 0.123 3.877 21 O -0.321 6.321 22 C 0.029 3.971 23 C -0.152 4.152 24 C -0.028 4.028 25 C -0.119 4.119 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.271 0.729 32 H 0.391 0.609 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.794 7.372 -11.054 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.666 4.666 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.519 5.519 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.353 5.353 14 C 0.286 3.714 15 O -0.419 6.419 16 C -0.144 4.144 17 C -0.091 4.091 18 C -0.084 4.084 19 C -0.231 4.231 20 C 0.078 3.922 21 O -0.235 6.235 22 C -0.066 4.066 23 C -0.171 4.171 24 C -0.028 4.028 25 C -0.175 4.175 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.224 0.776 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.145 0.855 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.249 7.223 -8.662 20.609 hybrid contribution 0.082 -0.088 -2.178 2.181 sum -17.167 7.136 -10.839 21.520 Atomic orbital electron populations 1.21884 0.97425 0.98696 1.02008 1.22224 0.93645 0.99859 1.01241 1.18967 0.95620 0.88394 0.82224 0.94295 1.21989 0.89827 1.49958 1.04782 0.91978 1.25595 0.96594 0.91682 1.02084 1.70870 1.13939 1.36521 1.30543 0.84230 0.76039 0.77649 0.76484 1.20886 1.20677 1.19960 1.46283 1.14607 1.56365 1.18078 1.20330 0.82614 0.79385 0.89088 1.90684 1.50549 1.59349 1.41273 1.20701 0.94818 1.01292 0.97632 1.19091 0.94201 0.94369 1.01440 1.20732 0.91453 0.98566 0.97617 1.21084 0.98163 0.96408 1.07464 1.18940 0.84143 0.92699 0.96425 1.86040 1.13265 1.44999 1.79148 1.23012 0.89008 0.95719 0.98911 1.20184 0.89980 1.01018 1.05877 1.19475 0.94027 0.94049 0.95264 1.20859 0.96154 0.99505 1.00984 0.93080 0.93221 0.95283 0.93278 0.92014 0.91895 0.77594 0.88444 0.88797 0.86015 0.85805 0.92819 0.92680 0.88495 0.85459 0.90977 0.91271 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.53 37.16 0.32 -2.62 16 2 C -0.13 -2.94 5.37 -26.73 -0.14 -3.08 16 3 C 0.25 5.95 1.84 -69.09 -0.13 5.82 16 4 H 0.04 1.02 6.12 -51.93 -0.32 0.70 16 5 C -0.63 -16.78 8.92 -34.44 -0.31 -17.08 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -26.09 13.70 55.43 0.76 -25.33 16 9 Si 1.03 25.11 26.56 -169.99 -4.51 20.60 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.38 6.34 56.52 0.36 -6.02 16 13 N -0.71 -13.80 5.03 -54.93 -0.28 -14.07 16 14 C 0.50 9.16 5.65 -10.98 -0.06 9.10 16 15 O -0.54 -11.76 13.17 5.56 0.07 -11.68 16 16 C -0.10 -1.42 5.15 -29.03 -0.15 -1.57 16 17 C -0.09 -1.29 4.37 -104.60 -0.46 -1.75 16 18 C -0.07 -0.87 9.67 -39.60 -0.38 -1.26 16 19 C -0.21 -2.67 9.04 -39.43 -0.36 -3.03 16 20 C 0.12 1.65 6.69 -39.21 -0.26 1.38 16 21 O -0.32 -3.91 10.50 -19.43 -0.20 -4.11 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C -0.15 -2.08 9.64 -39.43 -0.38 -2.46 16 24 C -0.03 -0.39 5.88 -104.65 -0.62 -1.01 16 25 C -0.12 -1.49 9.21 36.00 0.33 -1.16 16 26 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 27 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.46 5.77 -51.93 -0.30 1.16 16 31 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 32 H 0.39 6.78 8.53 -40.82 -0.35 6.43 16 33 H 0.10 1.14 6.98 -51.93 -0.36 0.78 16 34 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.12 1.24 6.30 -52.49 -0.33 0.91 16 37 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 38 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.07 1.06 6.15 -51.93 -0.32 0.74 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -32.05 344.62 -7.13 -39.18 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.46 Total: 6.46 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.70 Total: -16.22 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.48 Total: -39.41 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.13 Total: -15.80 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.51 Total: 20.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.05 -7.13 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935400634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.856 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds