Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48494 * 109.47013 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21278 * 119.99962 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.38286 * 119.94518 * 264.72900 * 17 16 14 19 19 C 1.38126 * 120.05477 * 179.72418 * 18 17 16 20 20 C 1.38756 * 119.94159 * 0.57056 * 19 18 17 21 21 O 1.35902 * 120.05203 * 179.68428 * 20 19 18 22 22 C 1.42899 * 117.00313 * 0.02562 * 21 20 19 23 23 C 1.38712 * 119.88825 * 359.70319 * 20 19 18 24 24 C 1.38166 * 119.94521 * 0.02562 * 23 20 19 25 25 C 1.50696 * 119.97114 * 180.02562 * 24 23 20 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97005 * 120.00373 * 264.99451 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.09004 * 109.46514 * 60.00019 * 16 14 13 35 35 H 1.08001 * 119.96937 * 359.97438 * 18 17 16 36 36 H 1.07998 * 120.02514 * 180.25388 * 19 18 17 37 37 H 1.09004 * 109.46683 * 300.00142 * 22 21 20 38 38 H 1.09001 * 109.46944 * 59.99814 * 22 21 20 39 39 H 1.08997 * 109.46936 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.02435 * 180.02562 * 23 20 19 41 41 H 1.08996 * 109.47118 * 270.01690 * 25 24 23 42 42 H 1.08998 * 109.47148 * 30.01754 * 25 24 23 43 43 H 1.08998 * 109.47106 * 150.02104 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3344 2.6299 -0.4675 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8751 -2.5735 18 6 -2.4030 3.1298 -3.0299 19 6 -3.6872 3.6272 -2.9228 20 6 -3.9003 4.8808 -2.3675 21 8 -5.1622 5.3750 -2.2669 22 6 -6.2229 4.5497 -2.7526 23 6 -2.8231 5.6288 -1.9156 24 6 -1.5410 5.1244 -2.0199 25 6 -0.3703 5.9363 -1.5286 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2955 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1092 2.5999 -3.4965 35 1 -2.2361 2.1563 -3.4668 36 1 -4.5241 3.0429 -3.2757 37 1 -6.0706 4.3490 -3.8131 38 1 -6.2321 3.6088 -2.2023 39 1 -7.1748 5.0620 -2.6131 40 1 -2.9864 6.6046 -1.4827 41 1 0.0047 6.5607 -2.3395 42 1 -0.6891 6.5692 -0.7004 43 1 0.4202 5.2663 -1.1906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935400634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -86.554084 kcal Electronic energy + Delta-G solvation = -23478.877065 eV Core-core repulsion = 20101.967837 eV Total energy + Delta-G solvation = -3376.909227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40363 -40.52980 -38.72100 -36.91783 -34.44137 -33.73860 -33.36659 -32.61947 -29.75724 -28.93425 -27.45361 -27.16687 -24.32919 -23.33171 -22.45830 -21.45541 -21.04990 -19.73370 -18.66176 -17.73923 -17.56280 -17.15406 -16.61976 -16.48742 -15.99118 -15.53586 -15.15852 -14.99881 -14.73841 -14.50055 -14.42386 -14.20284 -14.13124 -14.00226 -13.57146 -13.13266 -13.05084 -12.85966 -12.70029 -12.62945 -12.47892 -12.28860 -12.22140 -11.78969 -11.75561 -11.68113 -11.55868 -11.21197 -10.63878 -10.39634 -9.71889 -9.69915 -9.01307 -8.78771 -6.38652 0.39903 0.45210 1.46170 1.47950 1.69127 1.89908 2.37884 2.42206 2.51686 2.91800 2.94916 3.76684 3.83348 3.97073 4.18748 4.21013 4.32926 4.33141 4.38063 4.39446 4.41738 4.44421 4.58507 4.60576 4.68197 4.74215 4.78301 4.85048 4.90038 5.03559 5.10005 5.19270 5.24999 5.32828 5.35892 5.42981 5.56876 5.71662 5.74900 5.76272 5.85158 6.05221 6.47415 6.58019 6.97005 7.29581 7.57781 8.56893 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.003703 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.422184 B = 7558.874192 C = 7718.885115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C 0.257 3.743 4 H 0.017 0.983 5 C -0.624 4.624 6 H 0.043 0.957 7 C 0.007 3.993 8 N -0.917 5.917 9 Si 1.061 2.939 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.258 1.258 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.575 6.575 16 C -0.092 4.092 17 C -0.111 4.111 18 C -0.073 4.073 19 C -0.216 4.216 20 C 0.115 3.885 21 O -0.337 6.337 22 C 0.019 3.981 23 C -0.170 4.170 24 C -0.041 4.041 25 C -0.116 4.116 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.262 0.738 32 H 0.403 0.597 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.119 0.881 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.814 7.393 -12.249 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.152 3.848 4 H 0.035 0.965 5 C -0.661 4.661 6 H 0.062 0.938 7 C -0.196 4.196 8 N -0.551 5.551 9 Si 0.884 3.116 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.183 1.183 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.455 6.455 16 C -0.132 4.132 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.235 4.235 20 C 0.070 3.930 21 O -0.251 6.251 22 C -0.075 4.075 23 C -0.189 4.189 24 C -0.041 4.041 25 C -0.173 4.173 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.237 0.763 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.282 7.254 -9.895 22.855 hybrid contribution 0.632 -0.036 -1.879 1.983 sum -18.651 7.219 -11.774 23.207 Atomic orbital electron populations 1.21747 0.95618 1.00077 1.01376 1.22113 0.95151 0.98615 1.00761 1.18634 0.93289 0.89349 0.83574 0.96506 1.22172 0.91582 1.48488 1.03896 0.93830 1.26588 0.96718 0.91404 1.04868 1.70955 1.15071 1.38967 1.30074 0.83792 0.75764 0.78206 0.73864 1.20634 1.20066 1.18295 1.46128 1.15738 1.56682 1.17061 1.21077 0.81333 0.78286 0.90308 1.90668 1.51395 1.60440 1.42998 1.20664 0.95019 1.02135 0.95339 1.19251 0.94668 0.94763 1.02503 1.21028 0.91520 0.99173 0.97346 1.21369 0.98808 0.96317 1.06973 1.19134 0.84694 0.93012 0.96138 1.86024 1.13451 1.46208 1.79388 1.23323 0.88653 0.95869 0.99684 1.20386 0.90294 1.01684 1.06507 1.19695 0.94534 0.94476 0.95369 1.20857 0.95208 0.99290 1.01907 0.94675 0.92862 0.92829 0.92736 0.93523 0.92848 0.76286 0.86507 0.85904 0.84309 0.83439 0.91468 0.92296 0.86241 0.84832 0.88635 0.91042 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.53 71.98 0.61 -4.52 16 2 C -0.13 -5.59 5.37 30.60 0.16 -5.42 16 3 C 0.26 12.02 1.84 44.25 0.08 12.11 16 4 H 0.02 0.89 6.12 -2.39 -0.01 0.87 16 5 C -0.62 -33.53 8.92 25.60 0.23 -33.30 16 6 H 0.04 2.46 7.96 -2.91 -0.02 2.43 16 7 C 0.01 0.41 5.15 84.66 0.44 0.84 16 8 N -0.92 -54.75 13.70 21.45 0.29 -54.45 16 9 Si 1.06 50.78 26.56 68.60 1.82 52.60 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.62 6.34 99.48 0.63 -10.99 16 13 N -0.71 -26.89 5.03 -446.10 -2.24 -29.13 16 14 C 0.50 17.64 5.65 87.66 0.49 18.14 16 15 O -0.57 -24.51 13.17 -3.02 -0.04 -24.55 16 16 C -0.09 -2.28 5.15 29.10 0.15 -2.13 16 17 C -0.11 -2.96 4.37 -19.85 -0.09 -3.05 16 18 C -0.07 -1.77 9.67 22.25 0.22 -1.55 16 19 C -0.22 -4.96 9.04 22.37 0.20 -4.76 16 20 C 0.12 2.93 6.69 22.51 0.15 3.08 16 21 O -0.34 -7.67 10.50 -92.45 -0.97 -8.64 16 22 C 0.02 0.26 9.81 113.37 1.11 1.37 16 23 C -0.17 -4.52 9.64 22.37 0.22 -4.30 16 24 C -0.04 -1.10 5.88 -19.88 -0.12 -1.21 16 25 C -0.12 -2.80 9.21 71.23 0.66 -2.14 16 26 H 0.03 1.47 7.89 -2.39 -0.02 1.45 16 27 H 0.05 2.04 5.63 -2.39 -0.01 2.02 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.17 5.77 -2.39 -0.01 2.15 16 31 H 0.26 15.58 8.73 -92.71 -0.81 14.78 16 32 H 0.40 13.43 8.53 -92.70 -0.79 12.64 16 33 H 0.12 2.45 6.98 -2.39 -0.02 2.43 16 34 H 0.12 2.34 8.05 -2.38 -0.02 2.32 16 35 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.15 2.53 6.30 -2.91 -0.02 2.52 16 37 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 38 H 0.06 0.75 7.66 -2.39 -0.02 0.74 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 43 H 0.05 1.51 6.15 -2.39 -0.01 1.50 16 Total: -1.00 -69.21 344.62 3.49 -65.72 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.11 Total: 25.33 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.52 Total: -26.87 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -1.95 Total: -83.59 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.01 Total: -33.19 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 1.82 Total: 52.60 kcal Total: -69.21 3.49 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935400634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.833 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds