Wall clock time and date at job start Tue Mar 31 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47317 * 2 1 4 4 H 1.09006 * 109.46693 * 55.00208 * 3 2 1 5 5 C 1.53002 * 109.47095 * 175.00091 * 3 2 1 6 6 O 1.42896 * 109.47355 * 55.00041 * 5 3 2 7 7 C 1.42898 * 114.00136 * 179.97438 * 6 5 3 8 8 N 1.46498 * 109.47127 * 295.00303 * 3 2 1 9 9 C 1.34771 * 120.00094 * 84.99530 * 8 3 2 10 10 O 1.21281 * 120.00424 * 0.02562 * 9 8 3 11 11 C 1.50703 * 120.00019 * 179.97438 * 9 8 3 12 12 H 1.08994 * 109.47540 * 300.00800 * 11 9 8 13 13 C 1.50703 * 109.46783 * 60.00469 * 11 9 8 14 14 H 1.08006 * 119.99766 * 33.32165 * 13 11 9 15 15 C 1.37876 * 120.00246 * 213.32381 * 13 11 9 16 16 N 1.31514 * 119.99729 * 6.35999 * 15 13 11 17 17 Si 1.86798 * 120.00352 * 186.35310 * 15 13 11 18 18 H 1.48507 * 109.46870 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46918 * 120.00121 * 17 15 13 20 20 H 1.48493 * 109.47361 * 240.00421 * 17 15 13 21 21 C 1.50695 * 109.47021 * 180.02562 * 11 9 8 22 22 C 1.38238 * 120.00241 * 293.80460 * 21 11 9 23 23 C 1.38234 * 120.00251 * 179.81211 * 22 21 11 24 24 C 1.38236 * 119.99653 * 0.39906 * 23 22 21 25 25 C 1.38238 * 120.00123 * 359.85509 * 24 23 22 26 26 C 1.38227 * 120.00081 * 359.96014 * 25 24 23 27 27 H 1.08995 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47212 * 300.00056 * 1 2 3 29 29 H 1.09005 * 109.47203 * 59.99777 * 1 2 3 30 30 H 1.09003 * 109.47602 * 240.00126 * 2 1 3 31 31 H 1.08996 * 109.47354 * 120.00133 * 2 1 3 32 32 H 1.09002 * 109.46754 * 175.00839 * 5 3 2 33 33 H 1.09005 * 109.47167 * 294.99797 * 5 3 2 34 34 H 1.08998 * 109.47114 * 60.00047 * 7 6 5 35 35 H 1.08998 * 109.47001 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47400 * 300.00259 * 7 6 5 37 37 H 0.97001 * 119.99516 * 264.99733 * 8 3 2 38 38 H 0.96998 * 120.00199 * 180.02562 * 16 15 13 39 39 H 1.08004 * 119.99634 * 0.02562 * 22 21 11 40 40 H 1.07997 * 120.00136 * 180.23092 * 23 22 21 41 41 H 1.08003 * 120.00063 * 179.83383 * 24 23 22 42 42 H 1.08001 * 119.99614 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99929 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 4.1293 0.6404 -0.9121 7 6 5.5565 0.5751 -0.8856 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3393 2.6327 -0.4341 11 6 0.0366 3.3387 -2.6544 12 1 0.7280 4.1541 -2.8667 13 6 0.0799 2.3376 -3.7800 14 1 -0.1689 1.3034 -3.5927 15 6 0.4372 2.7418 -5.0488 16 7 0.8603 3.9702 -5.2528 17 14 0.3204 1.5448 -6.4781 18 1 -0.1806 0.2357 -5.9876 19 1 -0.6156 2.0818 -7.4983 20 1 1.6639 1.3654 -7.0846 21 6 -1.3608 3.8870 -2.5226 22 6 -2.4313 3.0241 -2.3797 23 6 -3.7128 3.5271 -2.2549 24 6 -3.9247 4.8929 -2.2814 25 6 -2.8548 5.7557 -2.4296 26 6 -1.5730 5.2527 -2.5505 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9355 2.4655 0.0367 33 1 3.8499 1.0377 1.0961 34 1 5.8833 0.1507 0.0637 35 1 5.9067 -0.0538 -1.7041 36 1 5.9683 1.5784 -0.9959 37 1 2.2719 2.1232 -1.9977 38 1 1.1113 4.2548 -6.1455 39 1 -2.2660 1.9569 -2.3620 40 1 -4.5487 2.8531 -2.1395 41 1 -4.9262 5.2859 -2.1866 42 1 -3.0205 6.8227 -2.4507 43 1 -0.7371 5.9268 -2.6659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126401800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:13 Heat of formation + Delta-G solvation = -72.452388 kcal Electronic energy + Delta-G solvation = -24081.082363 eV Core-core repulsion = 20704.784631 eV Total energy + Delta-G solvation = -3376.297732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.43182 -38.23040 -37.42044 -34.87826 -33.58966 -31.55911 -30.94078 -29.90891 -29.05585 -27.21286 -26.09353 -23.90433 -23.15873 -21.58220 -21.27461 -20.00731 -19.24047 -16.75883 -16.57900 -16.17021 -15.85082 -15.72787 -15.13432 -14.73228 -14.44647 -14.24168 -14.10741 -13.70382 -13.05009 -12.75297 -12.60411 -12.44085 -12.32515 -12.17365 -11.96997 -11.63008 -11.44407 -11.30210 -11.04029 -10.97071 -10.87465 -10.61363 -10.34866 -10.32376 -10.21859 -9.94624 -9.63588 -9.37274 -8.71719 -8.49609 -8.16056 -7.91816 -7.57680 -6.23258 -4.27217 2.40370 2.43493 3.22735 3.31529 3.35644 3.72671 3.89319 4.13539 4.34166 4.86424 4.96984 5.14175 5.18904 5.27989 5.37224 5.43902 5.59749 5.65467 5.71259 5.74394 5.81277 5.87789 5.94546 6.08632 6.24594 6.33202 6.40397 6.41530 6.53139 6.63526 6.73133 6.91246 6.98254 7.01095 7.15345 7.22823 7.38429 7.39696 7.48539 7.68483 7.80767 7.99474 8.12112 8.52907 8.77381 9.33852 9.39841 10.85533 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.006316 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.566065 B = 4431.770939 C = 5696.251266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.149 3.851 4 H 0.092 0.908 5 C 0.054 3.946 6 O -0.381 6.381 7 C 0.032 3.968 8 N -0.720 5.720 9 C 0.529 3.471 10 O -0.565 6.565 11 C 0.048 3.952 12 H 0.089 0.911 13 C -0.510 4.510 14 H 0.063 0.937 15 C 0.075 3.925 16 N -0.880 5.880 17 Si 0.896 3.104 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.009 4.009 22 C -0.083 4.083 23 C -0.135 4.135 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.120 4.120 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.409 0.591 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -3.041 7.854 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.043 3.957 4 H 0.110 0.890 5 C -0.023 4.023 6 O -0.299 6.299 7 C -0.065 4.065 8 N -0.373 5.373 9 C 0.319 3.681 10 O -0.445 6.445 11 C 0.027 3.973 12 H 0.107 0.893 13 C -0.547 4.547 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.516 5.516 17 Si 0.723 3.277 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.010 4.010 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.139 4.139 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.244 0.756 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.062 -3.028 8.237 9.671 hybrid contribution 0.484 -0.436 -1.118 1.294 sum 4.546 -3.464 7.119 9.129 Atomic orbital electron populations 1.21814 0.94978 0.99815 1.03573 1.21814 0.96827 0.96004 1.01756 1.20952 0.90881 0.94199 0.89666 0.89003 1.22886 0.94017 0.94728 0.90696 1.87962 1.19612 1.70480 1.51882 1.22718 0.81540 1.00862 1.01353 1.45925 1.17928 1.57950 1.15447 1.21508 0.80114 0.76621 0.89907 1.90581 1.51354 1.60848 1.41679 1.18134 0.91341 0.97907 0.89965 0.89277 1.20705 1.47775 0.94243 0.92016 0.91922 1.24940 0.93690 0.95364 0.98990 1.69892 1.42272 1.17048 1.22434 0.86468 0.77800 0.81307 0.82142 1.19469 1.20822 1.20844 1.20066 0.96637 0.92193 0.92136 1.20821 0.91768 0.99536 0.98031 1.20954 0.96809 0.94999 1.02522 1.20790 0.97787 0.93747 1.04443 1.20892 0.93260 0.98445 1.02438 1.20995 0.96303 0.95366 1.01203 0.94461 0.92757 0.91305 0.91138 0.92586 0.92730 0.92557 0.94486 0.89723 0.94141 0.75575 0.92492 0.87113 0.87656 0.87784 0.87634 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.51 37.15 0.32 -2.19 16 2 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 3 C 0.15 2.32 2.66 -67.93 -0.18 2.14 16 4 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 5 C 0.05 0.69 5.68 37.16 0.21 0.90 16 6 O -0.38 -5.24 9.65 -35.23 -0.34 -5.58 16 7 C 0.03 0.33 11.01 101.05 1.11 1.44 16 8 N -0.72 -13.49 4.91 -53.80 -0.26 -13.75 16 9 C 0.53 11.53 5.61 -10.99 -0.06 11.46 16 10 O -0.57 -13.07 12.56 5.56 0.07 -13.00 16 11 C 0.05 1.13 2.43 -94.08 -0.23 0.90 16 12 H 0.09 2.26 7.02 -51.93 -0.36 1.90 16 13 C -0.51 -12.84 7.46 -34.44 -0.26 -13.10 16 14 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 15 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 16 N -0.88 -23.41 12.79 55.43 0.71 -22.70 16 17 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.01 -0.22 4.30 -104.62 -0.45 -0.67 16 22 C -0.08 -1.88 8.32 -39.58 -0.33 -2.21 16 23 C -0.13 -2.68 10.05 -39.58 -0.40 -3.08 16 24 C -0.15 -2.81 10.05 -39.58 -0.40 -3.20 16 25 C -0.13 -2.58 10.05 -39.59 -0.40 -2.97 16 26 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.95 7.85 -51.92 -0.41 0.55 16 29 H 0.07 1.41 5.65 -51.93 -0.29 1.12 16 30 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.41 7.80 8.27 -40.82 -0.34 7.46 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.11 2.53 7.89 -52.48 -0.41 2.12 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.11 2.36 7.95 -52.49 -0.42 1.95 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -28.45 354.58 -7.99 -36.44 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -6.80 Total: 11.73 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.68 Total: -13.86 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.44 Total: -36.45 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.27 Total: -18.59 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.45 -7.99 -36.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126401800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.013 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds