Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47317 * 2 1 4 4 H 1.09006 * 109.46693 * 55.00208 * 3 2 1 5 5 C 1.53002 * 109.47095 * 175.00091 * 3 2 1 6 6 O 1.42896 * 109.47355 * 55.00041 * 5 3 2 7 7 C 1.42898 * 114.00136 * 179.97438 * 6 5 3 8 8 N 1.46498 * 109.47127 * 295.00303 * 3 2 1 9 9 C 1.34771 * 120.00094 * 84.99530 * 8 3 2 10 10 O 1.21281 * 120.00424 * 0.02562 * 9 8 3 11 11 C 1.50703 * 120.00019 * 179.97438 * 9 8 3 12 12 H 1.08994 * 109.47540 * 300.00800 * 11 9 8 13 13 C 1.50703 * 109.46783 * 60.00469 * 11 9 8 14 14 H 1.08006 * 119.99766 * 33.32165 * 13 11 9 15 15 C 1.37876 * 120.00246 * 213.32381 * 13 11 9 16 16 N 1.31514 * 119.99729 * 6.35999 * 15 13 11 17 17 Si 1.86798 * 120.00352 * 186.35310 * 15 13 11 18 18 H 1.48507 * 109.46870 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46918 * 120.00121 * 17 15 13 20 20 H 1.48493 * 109.47361 * 240.00421 * 17 15 13 21 21 C 1.50695 * 109.47021 * 180.02562 * 11 9 8 22 22 C 1.38238 * 120.00241 * 293.80460 * 21 11 9 23 23 C 1.38234 * 120.00251 * 179.81211 * 22 21 11 24 24 C 1.38236 * 119.99653 * 0.39906 * 23 22 21 25 25 C 1.38238 * 120.00123 * 359.85509 * 24 23 22 26 26 C 1.38227 * 120.00081 * 359.96014 * 25 24 23 27 27 H 1.08995 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47212 * 300.00056 * 1 2 3 29 29 H 1.09005 * 109.47203 * 59.99777 * 1 2 3 30 30 H 1.09003 * 109.47602 * 240.00126 * 2 1 3 31 31 H 1.08996 * 109.47354 * 120.00133 * 2 1 3 32 32 H 1.09002 * 109.46754 * 175.00839 * 5 3 2 33 33 H 1.09005 * 109.47167 * 294.99797 * 5 3 2 34 34 H 1.08998 * 109.47114 * 60.00047 * 7 6 5 35 35 H 1.08998 * 109.47001 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47400 * 300.00259 * 7 6 5 37 37 H 0.97001 * 119.99516 * 264.99733 * 8 3 2 38 38 H 0.96998 * 120.00199 * 180.02562 * 16 15 13 39 39 H 1.08004 * 119.99634 * 0.02562 * 22 21 11 40 40 H 1.07997 * 120.00136 * 180.23092 * 23 22 21 41 41 H 1.08003 * 120.00063 * 179.83383 * 24 23 22 42 42 H 1.08001 * 119.99614 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99929 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 4.1293 0.6404 -0.9121 7 6 5.5565 0.5751 -0.8856 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3393 2.6327 -0.4341 11 6 0.0366 3.3387 -2.6544 12 1 0.7280 4.1541 -2.8667 13 6 0.0799 2.3376 -3.7800 14 1 -0.1689 1.3034 -3.5927 15 6 0.4372 2.7418 -5.0488 16 7 0.8603 3.9702 -5.2528 17 14 0.3204 1.5448 -6.4781 18 1 -0.1806 0.2357 -5.9876 19 1 -0.6156 2.0818 -7.4983 20 1 1.6639 1.3654 -7.0846 21 6 -1.3608 3.8870 -2.5226 22 6 -2.4313 3.0241 -2.3797 23 6 -3.7128 3.5271 -2.2549 24 6 -3.9247 4.8929 -2.2814 25 6 -2.8548 5.7557 -2.4296 26 6 -1.5730 5.2527 -2.5505 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9355 2.4655 0.0367 33 1 3.8499 1.0377 1.0961 34 1 5.8833 0.1507 0.0637 35 1 5.9067 -0.0538 -1.7041 36 1 5.9683 1.5784 -0.9959 37 1 2.2719 2.1232 -1.9977 38 1 1.1113 4.2548 -6.1455 39 1 -2.2660 1.9569 -2.3620 40 1 -4.5487 2.8531 -2.1395 41 1 -4.9262 5.2859 -2.1866 42 1 -3.0205 6.8227 -2.4507 43 1 -0.7371 5.9268 -2.6659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126401800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = -88.840219 kcal Electronic energy + Delta-G solvation = -24081.792993 eV Core-core repulsion = 20704.784631 eV Total energy + Delta-G solvation = -3377.008362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02798 -39.65036 -38.71428 -36.25678 -35.47459 -33.17198 -32.62941 -31.52592 -30.28266 -28.88217 -27.04918 -25.76478 -24.39783 -23.20827 -22.81706 -21.40835 -20.89900 -18.66053 -17.86244 -17.73567 -17.32982 -16.90124 -16.35081 -16.31756 -15.99829 -15.70513 -15.61498 -15.30654 -14.69385 -14.15224 -14.10786 -13.92671 -13.81325 -13.53516 -13.33961 -13.23051 -13.00146 -12.87132 -12.75119 -12.39255 -12.20966 -12.11638 -11.93885 -11.83396 -11.68701 -11.61661 -11.22758 -10.67520 -10.57917 -10.27975 -9.70278 -9.54819 -9.24453 -8.20713 -6.29274 0.76455 0.81783 1.39427 1.43071 1.52965 2.05094 2.44145 2.60258 2.92402 3.09473 3.29100 3.80818 4.07147 4.23220 4.29398 4.30982 4.39956 4.42397 4.47610 4.53941 4.57018 4.60540 4.64748 4.72025 4.84384 4.90277 4.92459 4.98882 5.04213 5.07338 5.15765 5.35608 5.39400 5.46822 5.54139 5.67142 5.79322 5.81657 5.87248 5.98282 6.26049 6.27695 6.41962 6.75775 6.89287 7.36866 7.66858 8.87868 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.006316 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.566065 B = 4431.770939 C = 5696.251266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.143 3.857 4 H 0.087 0.913 5 C 0.061 3.939 6 O -0.408 6.408 7 C 0.027 3.973 8 N -0.713 5.713 9 C 0.530 3.470 10 O -0.581 6.581 11 C 0.049 3.951 12 H 0.064 0.936 13 C -0.509 4.509 14 H 0.049 0.951 15 C 0.035 3.965 16 N -0.906 5.906 17 Si 0.949 3.051 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.037 4.037 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.144 4.144 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.406 0.594 38 H 0.266 0.734 39 H 0.094 0.906 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -3.410 8.606 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.038 3.962 4 H 0.105 0.895 5 C -0.016 4.016 6 O -0.328 6.328 7 C -0.069 4.069 8 N -0.364 5.364 9 C 0.319 3.681 10 O -0.463 6.463 11 C 0.028 3.972 12 H 0.082 0.918 13 C -0.547 4.547 14 H 0.067 0.933 15 C -0.167 4.167 16 N -0.543 5.543 17 Si 0.775 3.225 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.038 4.038 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.162 4.162 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.241 0.759 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.792 -3.412 9.001 10.346 hybrid contribution 0.550 -0.314 -1.291 1.438 sum 4.342 -3.726 7.710 9.601 Atomic orbital electron populations 1.21726 0.96531 1.00080 1.01298 1.21760 0.95249 0.95925 1.02711 1.21189 0.93399 0.93897 0.87676 0.89498 1.22818 0.91485 0.95286 0.91989 1.87917 1.21704 1.70647 1.52483 1.22897 0.79655 1.01569 1.02800 1.45893 1.16675 1.57194 1.16590 1.21155 0.80961 0.76919 0.89091 1.90549 1.52055 1.61748 1.41905 1.18018 0.91606 0.96927 0.90663 0.91800 1.20728 1.47271 0.93853 0.92815 0.93257 1.25536 0.93651 0.96658 1.00848 1.69984 1.43301 1.18278 1.22786 0.85639 0.77929 0.79437 0.79511 1.19564 1.20986 1.19948 1.20133 0.96496 0.93239 0.93909 1.20820 0.93096 0.98677 0.99960 1.21321 0.96393 0.96429 1.01164 1.21265 0.99525 0.93012 1.02316 1.21291 0.92220 1.00478 1.00709 1.21139 0.97744 0.94823 1.02541 0.92904 0.93395 0.95096 0.92210 0.89372 0.92400 0.89389 0.92421 0.89141 0.93629 0.75909 0.92463 0.88813 0.84756 0.83567 0.84284 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.51 71.98 0.61 -4.23 16 2 C -0.12 -3.54 5.33 30.59 0.16 -3.37 16 3 C 0.14 4.41 2.66 44.99 0.12 4.53 16 4 H 0.09 2.79 7.58 -2.38 -0.02 2.77 16 5 C 0.06 1.45 5.68 71.98 0.41 1.86 16 6 O -0.41 -10.67 9.65 -148.98 -1.44 -12.11 16 7 C 0.03 0.49 11.01 113.37 1.25 1.74 16 8 N -0.71 -27.54 4.91 -442.52 -2.17 -29.71 16 9 C 0.53 24.14 5.61 87.66 0.49 24.63 16 10 O -0.58 -27.93 12.56 -3.03 -0.04 -27.97 16 11 C 0.05 2.45 2.43 -13.03 -0.03 2.42 16 12 H 0.06 3.45 7.02 -2.39 -0.02 3.44 16 13 C -0.51 -26.71 7.46 25.60 0.19 -26.51 16 14 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 15 C 0.03 1.82 5.45 84.65 0.46 2.28 16 16 N -0.91 -49.52 12.79 21.45 0.27 -49.25 16 17 Si 0.95 42.54 29.54 68.60 2.03 44.56 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 C -0.04 -1.79 4.30 -19.87 -0.09 -1.87 16 22 C -0.11 -4.94 8.32 22.27 0.19 -4.75 16 23 C -0.14 -5.19 10.05 22.27 0.22 -4.96 16 24 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 25 C -0.13 -4.80 10.05 22.27 0.22 -4.58 16 26 C -0.14 -6.44 9.67 22.27 0.22 -6.23 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.69 7.85 -2.38 -0.02 1.67 16 29 H 0.03 1.30 5.65 -2.38 -0.01 1.28 16 30 H 0.06 1.94 7.73 -2.39 -0.02 1.92 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.41 16.07 8.27 -92.71 -0.77 15.30 16 38 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 39 H 0.09 4.51 7.89 -2.91 -0.02 4.48 16 40 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 42 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 43 H 0.11 4.68 7.95 -2.91 -0.02 4.65 16 Total: -1.00 -63.26 354.58 3.53 -59.74 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: 0.22 Total: 38.52 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.65 Total: -23.79 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.90 Total: -78.96 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.48 Total: -40.07 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -63.26 3.53 -59.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126401800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.102 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds