Wall clock time and date at job start Tue Mar 31 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46994 * 2 1 4 4 H 1.09000 * 109.47206 * 55.00194 * 3 2 1 5 5 C 1.53005 * 109.47171 * 174.99928 * 3 2 1 6 6 O 1.42901 * 109.46908 * 54.99788 * 5 3 2 7 7 C 1.42901 * 113.99657 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.47133 * 294.99829 * 3 2 1 9 9 C 1.34783 * 120.00054 * 85.00156 * 8 3 2 10 10 O 1.21280 * 119.99784 * 359.97438 * 9 8 3 11 11 C 1.50694 * 119.99888 * 180.02562 * 9 8 3 12 12 H 1.08997 * 109.47764 * 59.99712 * 11 9 8 13 13 C 1.50707 * 109.47149 * 299.99543 * 11 9 8 14 14 H 1.07995 * 120.00044 * 325.53713 * 13 11 9 15 15 C 1.37881 * 119.99673 * 145.53378 * 13 11 9 16 16 N 1.31510 * 119.99956 * 6.60850 * 15 13 11 17 17 Si 1.86804 * 119.99699 * 186.60707 * 15 13 11 18 18 H 1.48497 * 109.47098 * 60.00268 * 17 15 13 19 19 H 1.48502 * 109.46950 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47187 * 300.00045 * 17 15 13 21 21 C 1.50704 * 109.47055 * 180.02562 * 11 9 8 22 22 C 1.38240 * 119.99783 * 245.90228 * 21 11 9 23 23 C 1.38229 * 119.99992 * 179.97438 * 22 21 11 24 24 C 1.38241 * 119.99946 * 359.97438 * 23 22 21 25 25 C 1.38230 * 120.00088 * 359.97438 * 24 23 22 26 26 C 1.38229 * 120.00048 * 65.91809 * 21 11 9 27 27 H 1.09004 * 109.47142 * 60.00502 * 1 2 3 28 28 H 1.09001 * 109.46987 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47336 * 300.00074 * 1 2 3 30 30 H 1.09007 * 109.47453 * 240.00291 * 2 1 3 31 31 H 1.08996 * 109.46951 * 120.00123 * 2 1 3 32 32 H 1.08999 * 109.46936 * 174.99938 * 5 3 2 33 33 H 1.09002 * 109.46896 * 295.00288 * 5 3 2 34 34 H 1.08998 * 109.47160 * 300.00292 * 7 6 5 35 35 H 1.09000 * 109.47329 * 60.00322 * 7 6 5 36 36 H 1.09005 * 109.46875 * 180.02562 * 7 6 5 37 37 H 0.97001 * 120.00381 * 265.00103 * 8 3 2 38 38 H 0.97007 * 119.99631 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.00050 * 359.97438 * 22 21 11 40 40 H 1.07997 * 120.00057 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.99867 * 179.72828 * 24 23 22 42 42 H 1.07999 * 120.00267 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.00307 * 0.02562 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 4.1293 0.6404 -0.9121 7 6 5.5566 0.5753 -0.8855 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3670 10 8 -0.3397 2.6319 -0.4345 11 6 0.0362 3.3376 -2.6549 12 1 0.0673 2.6130 -3.4685 13 6 0.9921 4.4649 -2.9494 14 1 1.4142 5.0407 -2.1391 15 6 1.3278 4.7610 -4.2536 16 7 0.7177 4.1490 -5.2448 17 14 2.6493 6.0316 -4.6123 18 1 3.9316 5.5983 -4.0013 19 1 2.8209 6.1662 -6.0812 20 1 2.2457 7.3409 -4.0395 21 6 -1.3612 3.8862 -2.5231 22 6 -2.3850 3.3611 -3.2894 23 6 -3.6668 3.8639 -3.1682 24 6 -3.9252 4.8915 -2.2804 25 6 -2.9017 5.4159 -1.5134 26 6 -1.6192 4.9147 -1.6363 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9355 2.4656 0.0366 33 1 3.8498 1.0377 1.0961 34 1 5.9682 1.5785 -0.9959 35 1 5.8834 0.1509 0.0638 36 1 5.9069 -0.0530 -1.7045 37 1 2.2719 2.1232 -1.9978 38 1 0.9536 4.3576 -6.1623 39 1 -2.1832 2.5580 -3.9828 40 1 -4.4667 3.4534 -3.7666 41 1 -4.9258 5.2873 -2.1889 42 1 -3.1034 6.2190 -0.8200 43 1 -0.8193 5.3254 -1.0382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126401803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:18 Heat of formation + Delta-G solvation = -72.542203 kcal Electronic energy + Delta-G solvation = -24017.065541 eV Core-core repulsion = 20640.763915 eV Total energy + Delta-G solvation = -3376.301627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.43195 -38.21900 -37.41403 -34.90378 -33.59864 -31.58739 -30.92962 -29.87617 -29.07225 -27.21441 -26.11092 -23.91124 -23.17443 -21.57049 -21.26634 -20.01490 -19.24139 -16.82957 -16.48118 -16.17359 -15.93081 -15.68684 -15.11354 -14.76728 -14.48537 -14.35148 -13.96407 -13.75315 -13.00806 -12.79478 -12.63777 -12.44255 -12.34877 -12.14311 -11.93473 -11.62441 -11.46753 -11.37964 -11.06042 -10.98972 -10.89781 -10.64449 -10.39804 -10.35147 -10.21002 -9.95147 -9.63889 -9.38700 -8.70953 -8.52903 -8.18162 -7.88187 -7.53691 -6.23355 -4.29362 2.44125 2.46943 3.21988 3.27705 3.29053 3.74009 3.85107 4.14053 4.31198 4.89281 4.96013 5.12915 5.19171 5.27357 5.37366 5.44136 5.55494 5.64190 5.70491 5.77127 5.83265 5.87107 5.95670 6.03948 6.26801 6.28938 6.33766 6.41272 6.55170 6.64531 6.67337 6.88154 6.92901 7.03852 7.14351 7.22477 7.37236 7.42789 7.51294 7.66207 7.81943 8.01937 8.13270 8.51607 8.74170 9.32561 9.37975 10.84834 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.006614 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.095012 B = 4232.439286 C = 5977.602018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.149 3.851 4 H 0.093 0.907 5 C 0.054 3.946 6 O -0.383 6.383 7 C 0.032 3.968 8 N -0.720 5.720 9 C 0.528 3.472 10 O -0.564 6.564 11 C 0.051 3.949 12 H 0.086 0.914 13 C -0.515 4.515 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.006 4.006 22 C -0.117 4.117 23 C -0.132 4.132 24 C -0.150 4.150 25 C -0.135 4.135 26 C -0.085 4.085 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.408 0.592 38 H 0.267 0.733 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -5.427 7.050 9.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.043 3.957 4 H 0.111 0.889 5 C -0.024 4.024 6 O -0.301 6.301 7 C -0.065 4.065 8 N -0.373 5.373 9 C 0.318 3.682 10 O -0.443 6.443 11 C 0.030 3.970 12 H 0.104 0.896 13 C -0.552 4.552 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.511 5.511 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.007 4.007 22 C -0.135 4.135 23 C -0.150 4.150 24 C -0.168 4.168 25 C -0.153 4.153 26 C -0.103 4.103 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.528 -5.559 7.361 9.876 hybrid contribution 1.268 0.951 -0.525 1.670 sum 4.796 -4.607 6.837 9.538 Atomic orbital electron populations 1.21804 0.94993 0.99798 1.03491 1.21834 0.96730 0.96110 1.01816 1.20949 0.90966 0.93956 0.89803 0.88934 1.22893 0.93979 0.94897 0.90591 1.87927 1.19672 1.70524 1.52027 1.22717 0.81499 1.00938 1.01313 1.45926 1.17886 1.57890 1.15589 1.21539 0.80140 0.75688 0.90826 1.90580 1.51686 1.60177 1.41888 1.18099 0.90314 0.97204 0.91394 0.89630 1.20630 1.25889 1.16228 0.92467 0.92082 1.24965 0.95949 0.96024 0.96177 1.69923 1.40036 1.41793 0.99361 0.86570 0.81961 0.81806 0.77243 1.20002 1.21150 1.20079 1.20014 0.94875 0.93594 0.92184 1.20974 0.92381 1.00371 0.99823 1.20888 0.96589 0.98098 0.99459 1.20776 0.98109 0.98909 0.99038 1.20935 0.93715 1.00425 1.00252 1.20795 0.95442 0.96150 0.97897 0.91784 0.94357 0.92554 0.91282 0.92391 0.92494 0.92577 0.94077 0.94464 0.89756 0.75649 0.92367 0.87117 0.87673 0.87834 0.87733 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.51 37.16 0.32 -2.06 16 2 C -0.13 -1.86 5.33 -26.73 -0.14 -2.01 16 3 C 0.15 2.32 2.66 -67.93 -0.18 2.13 16 4 H 0.09 1.52 7.58 -51.93 -0.39 1.12 16 5 C 0.05 0.69 5.68 37.16 0.21 0.90 16 6 O -0.38 -5.21 9.65 -35.23 -0.34 -5.55 16 7 C 0.03 0.33 11.01 101.05 1.11 1.44 16 8 N -0.72 -13.44 4.91 -53.81 -0.26 -13.70 16 9 C 0.53 11.50 5.61 -10.99 -0.06 11.44 16 10 O -0.56 -13.05 12.55 5.56 0.07 -12.98 16 11 C 0.05 1.21 2.36 -94.07 -0.22 0.99 16 12 H 0.09 2.18 7.17 -51.93 -0.37 1.81 16 13 C -0.51 -12.90 7.47 -34.44 -0.26 -13.16 16 14 H 0.06 1.55 7.82 -52.49 -0.41 1.13 16 15 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 16 N -0.88 -23.33 12.87 55.43 0.71 -22.62 16 17 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 C -0.01 -0.13 4.30 -104.62 -0.45 -0.58 16 22 C -0.12 -2.61 9.67 -39.58 -0.38 -3.00 16 23 C -0.13 -2.62 10.05 -39.58 -0.40 -3.01 16 24 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 25 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.08 -1.93 8.30 -39.58 -0.33 -2.26 16 27 H 0.06 1.24 5.65 -51.93 -0.29 0.95 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.96 7.85 -51.93 -0.41 0.56 16 30 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.41 7.71 8.27 -40.82 -0.34 7.37 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.11 2.40 7.96 -52.49 -0.42 1.98 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.11 2.51 7.90 -52.49 -0.41 2.10 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -28.37 354.72 -7.98 -36.35 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.81 Total: 11.89 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.68 Total: -13.74 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.45 Total: -36.32 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.27 Total: -18.53 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.37 -7.98 -36.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126401803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.188 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds