Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09005 * 109.47000 * 304.99887 * 3 2 1 5 5 C 1.52996 * 109.47099 * 185.00257 * 3 2 1 6 6 O 1.42899 * 109.46941 * 304.99696 * 5 3 2 7 7 C 1.42906 * 113.99498 * 180.02562 * 6 5 3 8 8 N 1.46497 * 109.47117 * 64.99986 * 3 2 1 9 9 C 1.34780 * 120.00006 * 275.00199 * 8 3 2 10 10 O 1.21280 * 119.99987 * 0.02562 * 9 8 3 11 11 C 1.50696 * 119.99926 * 180.02562 * 9 8 3 12 12 H 1.08997 * 109.47697 * 59.99834 * 11 9 8 13 13 C 1.50706 * 109.47061 * 299.99944 * 11 9 8 14 14 H 1.07991 * 119.99872 * 333.17217 * 13 11 9 15 15 C 1.37876 * 119.99740 * 153.17655 * 13 11 9 16 16 N 1.31507 * 120.00494 * 6.14936 * 15 13 11 17 17 Si 1.86807 * 119.99717 * 186.43180 * 15 13 11 18 18 H 1.48500 * 109.47045 * 179.71961 * 17 15 13 19 19 H 1.48502 * 109.46603 * 299.72255 * 17 15 13 20 20 H 1.48499 * 109.47175 * 59.72152 * 17 15 13 21 21 C 1.50706 * 109.47299 * 179.97438 * 11 9 8 22 22 C 1.38240 * 119.99451 * 66.39804 * 21 11 9 23 23 C 1.38229 * 119.99423 * 179.78687 * 22 21 11 24 24 C 1.38236 * 120.00641 * 0.44385 * 23 22 21 25 25 C 1.38240 * 119.99442 * 359.81319 * 24 23 22 26 26 C 1.38229 * 120.00266 * 246.67348 * 21 11 9 27 27 H 1.08999 * 109.46963 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46602 * 299.99907 * 1 2 3 29 29 H 1.08999 * 109.47298 * 60.00081 * 1 2 3 30 30 H 1.08999 * 109.46758 * 239.99598 * 2 1 3 31 31 H 1.08999 * 109.47298 * 119.99919 * 2 1 3 32 32 H 1.09006 * 109.47171 * 65.00011 * 5 3 2 33 33 H 1.09002 * 109.46810 * 184.99623 * 5 3 2 34 34 H 1.09000 * 109.47071 * 300.00035 * 7 6 5 35 35 H 1.08999 * 109.47305 * 60.00056 * 7 6 5 36 36 H 1.08997 * 109.46622 * 180.02562 * 7 6 5 37 37 H 0.96999 * 120.00188 * 95.00218 * 8 3 2 38 38 H 0.97006 * 119.99888 * 355.80595 * 16 15 13 39 39 H 1.07998 * 120.00102 * 0.02562 * 22 21 11 40 40 H 1.08009 * 120.00241 * 180.27609 * 23 22 21 41 41 H 1.07995 * 120.00680 * 179.82920 * 24 23 22 42 42 H 1.07998 * 120.00121 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99936 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1258 6 8 4.1293 0.6403 0.9121 7 6 5.5566 0.5751 0.8854 8 7 1.6526 2.0975 1.2518 9 6 0.4352 2.6644 1.3669 10 8 -0.3395 2.6319 0.4344 11 6 0.0368 3.3386 2.6544 12 1 0.7282 4.1541 2.8667 13 6 0.0802 2.3375 3.7801 14 1 -0.0654 1.2874 3.5746 15 6 0.3057 2.7625 5.0722 16 7 0.3624 4.0485 5.3411 17 14 0.5385 1.5113 6.4396 18 1 0.7707 2.2193 7.7242 19 1 -0.6790 0.6685 6.5518 20 1 1.7090 0.6515 6.1299 21 6 -1.3607 3.8871 2.5228 22 6 -2.4316 3.0239 2.3841 23 6 -3.7139 3.5268 2.2678 24 6 -3.9246 4.8930 2.2809 25 6 -2.8531 5.7562 2.4143 26 6 -1.5712 5.2532 2.5350 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8499 1.0376 -1.0962 33 1 3.9355 2.4654 -0.0367 34 1 5.8833 0.1507 -0.0639 35 1 5.9683 1.5783 0.9957 36 1 5.9069 -0.0538 1.7039 37 1 2.2720 2.1231 1.9977 38 1 0.3065 4.6973 4.6220 39 1 -2.2668 1.9567 2.3705 40 1 -4.5512 2.8524 2.1639 41 1 -4.9261 5.2859 2.1873 42 1 -3.0175 6.8235 2.4241 43 1 -0.7341 5.9275 2.6393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126401804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -74.800005 kcal Electronic energy + Delta-G solvation = -24145.172130 eV Core-core repulsion = 20768.772598 eV Total energy + Delta-G solvation = -3376.399532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.56543 -38.32989 -37.50577 -34.97803 -33.91143 -31.63539 -30.76298 -29.99814 -29.12991 -27.09222 -26.11107 -23.70373 -23.23003 -21.63291 -21.37018 -20.11939 -19.47115 -17.32603 -16.65171 -16.20742 -15.88850 -15.70232 -15.23428 -14.84637 -14.41761 -14.25686 -13.87749 -13.77162 -13.10479 -12.96258 -12.77800 -12.47882 -12.40704 -12.19400 -12.08241 -11.84891 -11.52525 -11.40916 -11.03699 -10.87944 -10.77103 -10.67183 -10.39187 -10.26583 -10.17803 -10.10778 -9.69828 -8.94610 -8.73394 -8.54548 -8.27512 -7.99762 -7.61743 -6.52290 -4.26912 2.31425 2.36298 3.39109 3.39629 3.58447 3.62171 3.80523 4.02322 4.44120 4.79239 4.89879 5.11538 5.21193 5.23410 5.31562 5.37823 5.53101 5.61063 5.64113 5.68180 5.72326 5.79576 5.87501 6.01336 6.11623 6.25841 6.28766 6.35122 6.43146 6.50031 6.64348 6.68145 6.90849 6.92102 7.00759 7.08903 7.26713 7.31679 7.38944 7.63044 7.86376 7.99247 8.25209 8.40217 8.66121 9.22027 9.44643 10.86631 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.006318 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.846861 B = 4430.758042 C = 5703.923718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.149 3.851 4 H 0.092 0.908 5 C 0.054 3.946 6 O -0.381 6.381 7 C 0.032 3.968 8 N -0.720 5.720 9 C 0.534 3.466 10 O -0.561 6.561 11 C 0.043 3.957 12 H 0.062 0.938 13 C -0.590 4.590 14 H 0.058 0.942 15 C 0.031 3.969 16 N -0.895 5.895 17 Si 1.067 2.933 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.284 1.284 21 C -0.016 4.016 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.147 4.147 25 C -0.129 4.129 26 C -0.128 4.128 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.408 0.592 38 H 0.272 0.728 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 -3.696 -8.579 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.043 3.957 4 H 0.110 0.890 5 C -0.023 4.023 6 O -0.300 6.300 7 C -0.065 4.065 8 N -0.373 5.373 9 C 0.323 3.677 10 O -0.440 6.440 11 C 0.022 3.978 12 H 0.080 0.920 13 C -0.627 4.627 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.529 5.529 17 Si 0.895 3.105 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.211 1.211 21 C -0.017 4.017 22 C -0.095 4.095 23 C -0.151 4.151 24 C -0.165 4.165 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.028 -3.944 -7.472 9.832 hybrid contribution 0.267 0.281 -1.428 1.480 sum 5.295 -3.663 -8.900 10.985 Atomic orbital electron populations 1.21815 0.94959 0.99916 1.03515 1.21816 0.96835 0.95896 1.01858 1.20968 0.90987 0.94278 0.89446 0.88977 1.22880 0.93911 0.94724 0.90813 1.87966 1.19699 1.70471 1.51828 1.22728 0.81441 1.00877 1.01445 1.45913 1.17813 1.57969 1.15555 1.21202 0.80215 0.76736 0.89532 1.90590 1.51241 1.60696 1.41445 1.18154 0.90922 0.97190 0.91554 0.92042 1.21530 1.55536 0.93358 0.92307 0.92395 1.25836 0.92955 0.99439 0.99347 1.70796 1.44824 1.01038 1.36232 0.83552 0.76812 0.74482 0.75667 1.20745 1.21323 1.21071 1.20107 0.96761 0.92170 0.92705 1.20773 0.91647 0.99540 0.97535 1.20979 0.96808 0.95042 1.02270 1.20810 0.97849 0.93713 1.04139 1.20871 0.93134 0.98522 1.02180 1.20952 0.96419 0.95185 1.02047 0.94337 0.91382 0.92770 0.92468 0.91078 0.92435 0.92777 0.94425 0.94148 0.89636 0.75675 0.91593 0.87038 0.87490 0.87598 0.87496 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.51 37.16 0.32 -2.18 16 2 C -0.13 -1.92 5.33 -26.73 -0.14 -2.06 16 3 C 0.15 2.29 2.66 -67.93 -0.18 2.11 16 4 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 5 C 0.05 0.67 5.68 37.16 0.21 0.88 16 6 O -0.38 -5.14 9.65 -35.23 -0.34 -5.48 16 7 C 0.03 0.31 11.01 101.05 1.11 1.43 16 8 N -0.72 -13.34 4.91 -53.81 -0.26 -13.60 16 9 C 0.53 11.60 5.61 -10.99 -0.06 11.54 16 10 O -0.56 -12.98 12.57 5.56 0.07 -12.91 16 11 C 0.04 1.02 1.94 -94.07 -0.18 0.84 16 12 H 0.06 1.51 6.63 -51.93 -0.34 1.17 16 13 C -0.59 -15.02 7.45 -34.44 -0.26 -15.27 16 14 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 15 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 16 N -0.89 -25.01 13.63 55.43 0.76 -24.25 16 17 Si 1.07 23.87 29.91 -169.99 -5.08 18.79 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.02 -0.39 4.17 -104.62 -0.44 -0.82 16 22 C -0.08 -1.76 8.33 -39.58 -0.33 -2.09 16 23 C -0.13 -2.68 10.05 -39.59 -0.40 -3.08 16 24 C -0.15 -2.79 10.05 -39.58 -0.40 -3.18 16 25 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 26 C -0.13 -2.80 9.50 -39.59 -0.38 -3.18 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.40 5.64 -51.93 -0.29 1.11 16 29 H 0.05 0.95 7.85 -51.93 -0.41 0.54 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.16 7.73 -51.93 -0.40 0.76 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.41 7.62 8.27 -40.82 -0.34 7.29 16 38 H 0.27 7.54 6.49 -40.82 -0.26 7.27 16 39 H 0.11 2.61 7.88 -52.49 -0.41 2.20 16 40 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.11 2.23 7.96 -52.49 -0.42 1.81 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -29.66 352.77 -7.87 -37.53 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -6.71 Total: 11.88 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.62 Total: -17.27 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.49 Total: -37.86 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.27 Total: -18.39 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.08 Total: 18.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.66 -7.87 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126401804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.269 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds