Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09005 * 109.47000 * 304.99887 * 3 2 1 5 5 C 1.52996 * 109.47099 * 185.00257 * 3 2 1 6 6 O 1.42899 * 109.46941 * 304.99696 * 5 3 2 7 7 C 1.42906 * 113.99498 * 180.02562 * 6 5 3 8 8 N 1.46497 * 109.47117 * 64.99986 * 3 2 1 9 9 C 1.34780 * 120.00006 * 275.00199 * 8 3 2 10 10 O 1.21280 * 119.99987 * 0.02562 * 9 8 3 11 11 C 1.50696 * 119.99926 * 180.02562 * 9 8 3 12 12 H 1.08997 * 109.47697 * 59.99834 * 11 9 8 13 13 C 1.50706 * 109.47061 * 299.99944 * 11 9 8 14 14 H 1.07991 * 119.99872 * 333.17217 * 13 11 9 15 15 C 1.37876 * 119.99740 * 153.17655 * 13 11 9 16 16 N 1.31507 * 120.00494 * 6.14936 * 15 13 11 17 17 Si 1.86807 * 119.99717 * 186.43180 * 15 13 11 18 18 H 1.48500 * 109.47045 * 179.71961 * 17 15 13 19 19 H 1.48502 * 109.46603 * 299.72255 * 17 15 13 20 20 H 1.48499 * 109.47175 * 59.72152 * 17 15 13 21 21 C 1.50706 * 109.47299 * 179.97438 * 11 9 8 22 22 C 1.38240 * 119.99451 * 66.39804 * 21 11 9 23 23 C 1.38229 * 119.99423 * 179.78687 * 22 21 11 24 24 C 1.38236 * 120.00641 * 0.44385 * 23 22 21 25 25 C 1.38240 * 119.99442 * 359.81319 * 24 23 22 26 26 C 1.38229 * 120.00266 * 246.67348 * 21 11 9 27 27 H 1.08999 * 109.46963 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46602 * 299.99907 * 1 2 3 29 29 H 1.08999 * 109.47298 * 60.00081 * 1 2 3 30 30 H 1.08999 * 109.46758 * 239.99598 * 2 1 3 31 31 H 1.08999 * 109.47298 * 119.99919 * 2 1 3 32 32 H 1.09006 * 109.47171 * 65.00011 * 5 3 2 33 33 H 1.09002 * 109.46810 * 184.99623 * 5 3 2 34 34 H 1.09000 * 109.47071 * 300.00035 * 7 6 5 35 35 H 1.08999 * 109.47305 * 60.00056 * 7 6 5 36 36 H 1.08997 * 109.46622 * 180.02562 * 7 6 5 37 37 H 0.96999 * 120.00188 * 95.00218 * 8 3 2 38 38 H 0.97006 * 119.99888 * 355.80595 * 16 15 13 39 39 H 1.07998 * 120.00102 * 0.02562 * 22 21 11 40 40 H 1.08009 * 120.00241 * 180.27609 * 23 22 21 41 41 H 1.07995 * 120.00680 * 179.82920 * 24 23 22 42 42 H 1.07998 * 120.00121 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.99936 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1258 6 8 4.1293 0.6403 0.9121 7 6 5.5566 0.5751 0.8854 8 7 1.6526 2.0975 1.2518 9 6 0.4352 2.6644 1.3669 10 8 -0.3395 2.6319 0.4344 11 6 0.0368 3.3386 2.6544 12 1 0.7282 4.1541 2.8667 13 6 0.0802 2.3375 3.7801 14 1 -0.0654 1.2874 3.5746 15 6 0.3057 2.7625 5.0722 16 7 0.3624 4.0485 5.3411 17 14 0.5385 1.5113 6.4396 18 1 0.7707 2.2193 7.7242 19 1 -0.6790 0.6685 6.5518 20 1 1.7090 0.6515 6.1299 21 6 -1.3607 3.8871 2.5228 22 6 -2.4316 3.0239 2.3841 23 6 -3.7139 3.5268 2.2678 24 6 -3.9246 4.8930 2.2809 25 6 -2.8531 5.7562 2.4143 26 6 -1.5712 5.2532 2.5350 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8499 1.0376 -1.0962 33 1 3.9355 2.4654 -0.0367 34 1 5.8833 0.1507 -0.0639 35 1 5.9683 1.5783 0.9957 36 1 5.9069 -0.0538 1.7039 37 1 2.2720 2.1231 1.9977 38 1 0.3065 4.6973 4.6220 39 1 -2.2668 1.9567 2.3705 40 1 -4.5512 2.8524 2.1639 41 1 -4.9261 5.2859 2.1873 42 1 -3.0175 6.8235 2.4241 43 1 -0.7341 5.9275 2.6393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126401804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -92.366540 kcal Electronic energy + Delta-G solvation = -24145.933873 eV Core-core repulsion = 20768.772598 eV Total energy + Delta-G solvation = -3377.161274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17113 -39.75718 -38.77832 -36.35177 -35.80988 -33.18570 -32.51644 -31.63077 -30.34085 -28.74444 -27.05404 -25.63335 -24.45423 -23.27710 -22.91983 -21.54679 -21.12453 -19.19711 -17.89848 -17.75866 -17.28128 -16.97377 -16.49527 -16.23888 -15.85485 -15.71526 -15.61177 -15.40718 -14.73187 -14.62129 -14.08371 -13.99782 -13.80146 -13.73460 -13.50728 -13.21911 -13.10749 -12.80339 -12.58425 -12.40677 -12.19946 -11.96993 -11.91541 -11.88077 -11.78255 -11.71648 -10.88569 -10.62183 -10.57295 -10.42914 -9.80536 -9.64513 -9.32442 -8.60983 -6.35196 0.66386 0.72634 1.55639 1.61560 1.80895 1.93291 2.49372 2.58081 2.87857 3.10771 3.23462 3.75122 4.01537 4.11215 4.22144 4.23840 4.29879 4.38313 4.38900 4.41535 4.48359 4.57473 4.61573 4.64552 4.69175 4.78390 4.85002 4.90189 4.91733 4.98886 5.03005 5.26402 5.31252 5.33506 5.48918 5.68826 5.71746 5.74953 5.79801 6.07442 6.17595 6.24022 6.32175 6.56618 6.77652 7.41804 7.53896 8.78041 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.006318 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.846861 B = 4430.758042 C = 5703.923718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.143 3.857 4 H 0.087 0.913 5 C 0.061 3.939 6 O -0.408 6.408 7 C 0.027 3.973 8 N -0.712 5.712 9 C 0.534 3.466 10 O -0.578 6.578 11 C 0.042 3.958 12 H 0.043 0.957 13 C -0.583 4.583 14 H 0.045 0.955 15 C -0.011 4.011 16 N -0.921 5.921 17 Si 1.107 2.893 18 H -0.285 1.285 19 H -0.281 1.281 20 H -0.265 1.265 21 C -0.042 4.042 22 C -0.104 4.104 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.150 4.150 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.406 0.594 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 -4.172 -9.461 11.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.038 3.962 4 H 0.105 0.895 5 C -0.016 4.016 6 O -0.328 6.328 7 C -0.069 4.069 8 N -0.363 5.363 9 C 0.323 3.677 10 O -0.459 6.459 11 C 0.020 3.980 12 H 0.061 0.939 13 C -0.621 4.621 14 H 0.063 0.937 15 C -0.212 4.212 16 N -0.557 5.557 17 Si 0.930 3.070 18 H -0.211 1.211 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.043 4.043 22 C -0.122 4.122 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.145 4.145 26 C -0.169 4.169 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.241 0.759 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.154 0.846 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.033 -4.437 -8.381 10.736 hybrid contribution 0.242 0.436 -1.233 1.330 sum 5.275 -4.001 -9.614 11.673 Atomic orbital electron populations 1.21727 0.96616 1.00151 1.01151 1.21764 0.95150 0.95875 1.02856 1.21211 0.93568 0.93929 0.87448 0.89492 1.22812 0.91296 0.95343 0.92105 1.87921 1.21796 1.70644 1.52413 1.22908 0.79546 1.01617 1.02869 1.45883 1.16509 1.57135 1.16738 1.20852 0.81111 0.77055 0.88690 1.90560 1.51986 1.61608 1.41704 1.18091 0.91290 0.96400 0.92179 0.93912 1.21586 1.54490 0.92995 0.93010 0.93699 1.26978 0.92496 1.00130 1.01610 1.70883 1.47205 1.01650 1.35953 0.83045 0.77641 0.73039 0.73321 1.21065 1.20669 1.19042 1.20152 0.96525 0.93249 0.94404 1.20775 0.93131 0.98583 0.99736 1.21345 0.96357 0.96534 1.01002 1.21296 0.99658 0.92935 1.02026 1.21303 0.92148 1.00600 1.00419 1.21143 0.97963 0.94649 1.03098 0.92783 0.95310 0.93447 0.89211 0.92105 0.89287 0.92343 0.92410 0.93577 0.89050 0.75889 0.92576 0.89026 0.84650 0.83336 0.84051 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 8.51 71.98 0.61 -4.22 16 2 C -0.12 -3.49 5.33 30.60 0.16 -3.32 16 3 C 0.14 4.32 2.66 44.99 0.12 4.44 16 4 H 0.09 2.75 7.58 -2.38 -0.02 2.73 16 5 C 0.06 1.41 5.68 71.98 0.41 1.82 16 6 O -0.41 -10.35 9.65 -148.98 -1.44 -11.79 16 7 C 0.03 0.47 11.01 113.37 1.25 1.72 16 8 N -0.71 -27.05 4.91 -442.54 -2.17 -29.22 16 9 C 0.53 24.23 5.61 87.66 0.49 24.72 16 10 O -0.58 -27.76 12.57 -3.03 -0.04 -27.79 16 11 C 0.04 2.08 1.94 -13.03 -0.03 2.05 16 12 H 0.04 2.25 6.63 -2.39 -0.02 2.23 16 13 C -0.58 -30.86 7.45 25.60 0.19 -30.67 16 14 H 0.04 2.44 7.82 -2.92 -0.02 2.42 16 15 C -0.01 -0.59 5.45 84.66 0.46 -0.12 16 16 N -0.92 -52.97 13.63 21.45 0.29 -52.67 16 17 Si 1.11 48.64 29.91 68.60 2.05 50.69 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 C -0.04 -2.07 4.17 -19.86 -0.08 -2.15 16 22 C -0.10 -4.89 8.33 22.27 0.19 -4.71 16 23 C -0.13 -5.27 10.05 22.27 0.22 -5.05 16 24 C -0.14 -4.98 10.05 22.27 0.22 -4.75 16 25 C -0.13 -4.75 10.05 22.27 0.22 -4.53 16 26 C -0.15 -6.70 9.50 22.27 0.21 -6.49 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.21 5.64 -2.39 -0.01 1.20 16 29 H 0.05 1.67 7.85 -2.39 -0.02 1.65 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.94 7.73 -2.39 -0.02 1.92 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.41 15.64 8.27 -92.71 -0.77 14.87 16 38 H 0.26 15.20 6.49 -92.70 -0.60 14.60 16 39 H 0.09 4.54 7.88 -2.91 -0.02 4.52 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.11 4.61 7.96 -2.91 -0.02 4.59 16 Total: -1.00 -66.31 352.77 3.74 -62.57 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: 0.39 Total: 39.48 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 4.66 Total: -31.26 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -1.88 Total: -81.90 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.48 Total: -39.58 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.05 Total: 50.69 kcal Total: -66.31 3.74 -62.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126401804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.800 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds