Wall clock time and date at job start Tue Mar 31 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 N 1.46899 * 109.47499 * 182.30780 * 3 2 1 5 5 C 1.46905 * 110.99799 * 300.29869 * 4 3 2 6 6 C 1.50700 * 109.46755 * 293.95092 * 5 4 3 7 7 H 1.08005 * 120.00079 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00150 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00056 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47389 * 60.00006 * 10 8 6 12 12 H 1.48500 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47339 * 299.99538 * 10 8 6 14 14 C 1.46905 * 110.99738 * 64.24751 * 4 3 2 15 15 C 1.50695 * 109.47086 * 69.08800 * 14 4 3 16 16 C 1.37962 * 120.07697 * 254.10259 * 15 14 4 17 17 C 1.38349 * 120.14873 * 179.97438 * 16 15 14 18 18 C 1.38384 * 120.30720 * 0.04820 * 17 16 15 19 19 C 1.37919 * 120.14921 * 359.97438 * 18 17 16 20 20 C 1.39607 * 120.07482 * 73.83488 * 15 14 4 21 21 C 1.47729 * 120.15308 * 359.97438 * 20 15 14 22 22 O 1.21468 * 119.99445 * 0.02562 * 21 20 15 23 23 O 1.34708 * 120.00167 * 180.02562 * 21 20 15 24 24 C 1.45203 * 116.99845 * 180.02562 * 23 21 20 25 25 H 1.08999 * 109.47585 * 300.00076 * 1 2 3 26 26 H 1.09000 * 109.47526 * 60.00098 * 1 2 3 27 27 H 1.09004 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47585 * 239.99924 * 2 1 3 29 29 H 1.08997 * 109.47036 * 119.99798 * 2 1 3 30 30 H 1.09000 * 109.47452 * 62.30093 * 3 2 1 31 31 H 1.09001 * 109.46910 * 302.30795 * 3 2 1 32 32 H 1.08998 * 109.47309 * 53.94898 * 5 4 3 33 33 H 1.08998 * 109.47029 * 173.95361 * 5 4 3 34 34 H 0.96995 * 120.00469 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46446 * 189.08745 * 14 4 3 36 36 H 1.09001 * 109.47327 * 309.08094 * 14 4 3 37 37 H 1.08003 * 119.92545 * 0.02562 * 16 15 14 38 38 H 1.08009 * 119.84334 * 180.02562 * 17 16 15 39 39 H 1.07992 * 119.92644 * 179.97438 * 18 17 16 40 40 H 1.07998 * 120.07982 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.46997 * 299.99367 * 24 23 21 42 42 H 1.08997 * 109.47095 * 59.99569 * 24 23 21 43 43 H 1.08999 * 109.47047 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5079 1.4429 -0.0558 5 6 4.0787 0.7353 1.0982 6 6 3.7676 1.4988 2.3596 7 1 3.2028 2.4180 2.3092 8 6 4.2050 1.0245 3.5782 9 7 4.8933 -0.0945 3.6396 10 14 3.8188 1.9705 5.1418 11 1 2.3466 2.0764 5.3056 12 1 4.3959 1.2554 6.3084 13 1 4.4064 3.3315 5.0549 14 6 3.9869 0.8638 -1.3180 15 6 3.6497 1.7919 -2.4564 16 6 2.6268 1.4757 -3.3265 17 6 2.3157 2.3269 -4.3718 18 6 3.0275 3.4997 -4.5529 19 6 4.0528 3.8279 -3.6907 20 6 4.3680 2.9764 -2.6296 21 6 5.4603 3.3248 -1.6980 22 8 5.7355 2.5797 -0.7791 23 8 6.1511 4.4688 -1.8677 24 6 7.2111 4.7462 -0.9149 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.7107 1.9443 0.9099 31 1 1.6432 1.9681 -0.8686 32 1 3.6467 -0.2634 1.1620 33 1 5.1592 0.6568 0.9780 34 1 5.2007 -0.4284 4.4968 35 1 5.0672 0.7274 -1.2682 36 1 3.5060 -0.1007 -1.4809 37 1 2.0672 0.5620 -3.1909 38 1 1.5136 2.0747 -5.0498 39 1 2.7797 4.1595 -5.3711 40 1 4.6079 4.7433 -3.8334 41 1 6.7910 4.8040 0.0893 42 1 7.9523 3.9480 -0.9533 43 1 7.6858 5.6948 -1.1656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137789358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:32 Heat of formation + Delta-G solvation = -49.346193 kcal Electronic energy + Delta-G solvation = -24247.604161 eV Core-core repulsion = 20872.308388 eV Total energy + Delta-G solvation = -3375.295772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31293 -38.73863 -37.07400 -35.85826 -32.69868 -32.44635 -31.32965 -30.84954 -27.59756 -26.97797 -26.02039 -24.10757 -23.31478 -22.02473 -21.62661 -20.43820 -19.10583 -17.55574 -16.47310 -16.15430 -15.93129 -15.53743 -15.24707 -14.97177 -14.59295 -14.26165 -13.99804 -13.60414 -13.36060 -13.13890 -12.90750 -12.74072 -12.21986 -12.16242 -11.83278 -11.64396 -11.46198 -11.29903 -11.13903 -10.96468 -10.83104 -10.75697 -10.60331 -10.36469 -10.32618 -9.80773 -9.80024 -9.42028 -9.09434 -8.87893 -8.63760 -8.30062 -6.96073 -5.90521 -3.89485 0.95204 1.45155 2.97983 3.06893 3.38749 3.42380 3.45721 3.95971 4.52160 4.86074 4.93464 5.01672 5.11512 5.29767 5.38534 5.43233 5.46056 5.49899 5.55897 5.58719 5.60452 5.77996 5.86878 5.92536 5.98076 6.07286 6.15201 6.30420 6.36978 6.40877 6.47207 6.49463 6.55618 6.63561 6.85430 6.86501 6.98678 7.03263 7.54228 7.55116 7.92820 8.25452 8.32860 8.42713 8.72078 9.17060 9.72649 11.20439 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.006183 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.149329 B = 4527.624722 C = 6067.229827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.063 3.937 4 N -0.512 5.512 5 C 0.198 3.802 6 C -0.495 4.495 7 H 0.058 0.942 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.082 3.918 15 C -0.001 4.001 16 C -0.129 4.129 17 C -0.091 4.091 18 C -0.144 4.144 19 C -0.070 4.070 20 C -0.101 4.101 21 C 0.489 3.511 22 O -0.444 6.444 23 O -0.369 6.369 24 C 0.040 3.960 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.048 0.952 32 H -0.006 1.006 33 H 0.033 0.967 34 H 0.259 0.741 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 6.034 -16.319 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.065 4.065 4 N -0.235 5.235 5 C 0.074 3.926 6 C -0.533 4.533 7 H 0.076 0.924 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.046 4.046 15 C -0.002 4.002 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.162 4.162 19 C -0.088 4.088 20 C -0.102 4.102 21 C 0.330 3.670 22 O -0.327 6.327 23 O -0.288 6.288 24 C -0.054 4.054 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.011 0.989 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.050 0.950 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.383 6.175 -15.816 17.145 hybrid contribution -0.369 -0.347 1.057 1.172 sum -2.752 5.828 -14.759 16.105 Atomic orbital electron populations 1.21652 0.96657 1.00549 1.01113 1.22171 0.95300 1.00584 1.02149 1.22099 0.89096 0.94233 1.01120 1.62284 1.05364 1.54862 1.00980 1.19697 0.95207 0.91658 0.86055 1.21090 1.33672 1.08024 0.90560 0.92397 1.24934 0.95584 0.95179 0.98907 1.69947 1.37959 1.20947 1.25235 0.86643 0.78419 0.80005 0.82779 1.20446 1.21480 1.20392 1.21219 1.01947 0.92647 0.88799 1.20187 0.92068 0.93234 0.94727 1.21046 0.97652 1.00627 0.95477 1.21311 0.98563 0.94067 0.96969 1.21032 0.97088 0.97756 1.00356 1.21421 0.96146 0.98453 0.92828 1.18958 0.97646 0.96915 0.96697 1.21117 0.81871 0.79689 0.84300 1.91021 1.64211 1.48616 1.28864 1.86463 1.46559 1.41345 1.54386 1.23166 0.88283 1.01232 0.92691 0.92828 0.93632 0.93700 0.93164 0.90490 0.90455 0.93344 0.98878 0.94851 0.93126 0.88841 0.95009 0.85551 0.85895 0.85757 0.84931 0.91487 0.92182 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 37.15 0.37 -1.76 16 2 C -0.16 -2.97 5.27 -26.74 -0.14 -3.11 16 3 C 0.06 1.26 4.99 -3.83 -0.02 1.24 16 4 N -0.51 -11.41 3.50 -237.51 -0.83 -12.25 16 5 C 0.20 5.32 4.24 -4.97 -0.02 5.30 16 6 C -0.49 -14.29 8.52 -34.44 -0.29 -14.58 16 7 H 0.06 1.68 7.10 -52.48 -0.37 1.30 16 8 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 10 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.08 1.57 3.97 -4.98 -0.02 1.55 16 15 C 0.00 -0.02 4.56 -104.21 -0.48 -0.49 16 16 C -0.13 -1.72 9.08 -39.64 -0.36 -2.08 16 17 C -0.09 -1.00 10.04 -39.49 -0.40 -1.39 16 18 C -0.14 -1.56 10.03 -39.64 -0.40 -1.95 16 19 C -0.07 -0.90 9.62 -39.17 -0.38 -1.28 16 20 C -0.10 -1.62 5.87 -104.98 -0.62 -2.23 16 21 C 0.49 8.83 7.86 34.61 0.27 9.11 16 22 O -0.44 -9.65 11.92 -19.24 -0.23 -9.87 16 23 O -0.37 -5.74 9.82 -40.51 -0.40 -6.14 16 24 C 0.04 0.53 10.56 101.05 1.07 1.60 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.86 6.22 -51.93 -0.32 0.53 16 29 H 0.08 1.66 6.39 -51.93 -0.33 1.33 16 30 H 0.08 1.70 6.87 -51.93 -0.36 1.35 16 31 H 0.05 0.88 6.81 -51.93 -0.35 0.53 16 32 H -0.01 -0.18 6.04 -51.93 -0.31 -0.49 16 33 H 0.03 1.00 7.70 -51.93 -0.40 0.60 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.09 1.96 6.12 -51.93 -0.32 1.65 16 36 H 0.03 0.58 5.79 -51.93 -0.30 0.28 16 37 H 0.13 1.52 7.99 -52.48 -0.42 1.10 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.48 7.61 -52.49 -0.40 1.08 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -32.56 347.29 -8.42 -40.98 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.41 Total: 0.04 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.51 Total: -8.60 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.09 Total: -38.96 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.63 Total: -16.02 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.56 -8.42 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137789358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.367 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds