Wall clock time and date at job start Tue Mar 31 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 N 1.46899 * 109.47499 * 182.30780 * 3 2 1 5 5 C 1.46905 * 110.99799 * 300.29869 * 4 3 2 6 6 C 1.50700 * 109.46755 * 293.95092 * 5 4 3 7 7 H 1.08005 * 120.00079 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00150 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00056 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47389 * 60.00006 * 10 8 6 12 12 H 1.48500 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47339 * 299.99538 * 10 8 6 14 14 C 1.46905 * 110.99738 * 64.24751 * 4 3 2 15 15 C 1.50695 * 109.47086 * 69.08800 * 14 4 3 16 16 C 1.37962 * 120.07697 * 254.10259 * 15 14 4 17 17 C 1.38349 * 120.14873 * 179.97438 * 16 15 14 18 18 C 1.38384 * 120.30720 * 0.04820 * 17 16 15 19 19 C 1.37919 * 120.14921 * 359.97438 * 18 17 16 20 20 C 1.39607 * 120.07482 * 73.83488 * 15 14 4 21 21 C 1.47729 * 120.15308 * 359.97438 * 20 15 14 22 22 O 1.21468 * 119.99445 * 0.02562 * 21 20 15 23 23 O 1.34708 * 120.00167 * 180.02562 * 21 20 15 24 24 C 1.45203 * 116.99845 * 180.02562 * 23 21 20 25 25 H 1.08999 * 109.47585 * 300.00076 * 1 2 3 26 26 H 1.09000 * 109.47526 * 60.00098 * 1 2 3 27 27 H 1.09004 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47585 * 239.99924 * 2 1 3 29 29 H 1.08997 * 109.47036 * 119.99798 * 2 1 3 30 30 H 1.09000 * 109.47452 * 62.30093 * 3 2 1 31 31 H 1.09001 * 109.46910 * 302.30795 * 3 2 1 32 32 H 1.08998 * 109.47309 * 53.94898 * 5 4 3 33 33 H 1.08998 * 109.47029 * 173.95361 * 5 4 3 34 34 H 0.96995 * 120.00469 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46446 * 189.08745 * 14 4 3 36 36 H 1.09001 * 109.47327 * 309.08094 * 14 4 3 37 37 H 1.08003 * 119.92545 * 0.02562 * 16 15 14 38 38 H 1.08009 * 119.84334 * 180.02562 * 17 16 15 39 39 H 1.07992 * 119.92644 * 179.97438 * 18 17 16 40 40 H 1.07998 * 120.07982 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.46997 * 299.99367 * 24 23 21 42 42 H 1.08997 * 109.47095 * 59.99569 * 24 23 21 43 43 H 1.08999 * 109.47047 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5079 1.4429 -0.0558 5 6 4.0787 0.7353 1.0982 6 6 3.7676 1.4988 2.3596 7 1 3.2028 2.4180 2.3092 8 6 4.2050 1.0245 3.5782 9 7 4.8933 -0.0945 3.6396 10 14 3.8188 1.9705 5.1418 11 1 2.3466 2.0764 5.3056 12 1 4.3959 1.2554 6.3084 13 1 4.4064 3.3315 5.0549 14 6 3.9869 0.8638 -1.3180 15 6 3.6497 1.7919 -2.4564 16 6 2.6268 1.4757 -3.3265 17 6 2.3157 2.3269 -4.3718 18 6 3.0275 3.4997 -4.5529 19 6 4.0528 3.8279 -3.6907 20 6 4.3680 2.9764 -2.6296 21 6 5.4603 3.3248 -1.6980 22 8 5.7355 2.5797 -0.7791 23 8 6.1511 4.4688 -1.8677 24 6 7.2111 4.7462 -0.9149 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.7107 1.9443 0.9099 31 1 1.6432 1.9681 -0.8686 32 1 3.6467 -0.2634 1.1620 33 1 5.1592 0.6568 0.9780 34 1 5.2007 -0.4284 4.4968 35 1 5.0672 0.7274 -1.2682 36 1 3.5060 -0.1007 -1.4809 37 1 2.0672 0.5620 -3.1909 38 1 1.5136 2.0747 -5.0498 39 1 2.7797 4.1595 -5.3711 40 1 4.6079 4.7433 -3.8334 41 1 6.7910 4.8040 0.0893 42 1 7.9523 3.9480 -0.9533 43 1 7.6858 5.6948 -1.1656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137789358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:32 Heat of formation + Delta-G solvation = -68.965877 kcal Electronic energy + Delta-G solvation = -24248.454934 eV Core-core repulsion = 20872.308388 eV Total energy + Delta-G solvation = -3376.146545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59736 -39.99013 -38.60481 -37.25083 -34.85308 -33.81212 -32.38580 -32.31063 -29.13112 -28.56660 -27.45985 -25.73405 -24.62870 -23.67656 -22.86258 -21.73837 -20.70510 -18.75688 -18.35412 -17.73462 -17.28249 -16.94004 -16.63811 -16.46472 -16.21859 -15.61943 -15.32612 -15.13669 -14.84201 -14.33360 -14.21971 -14.16089 -13.89134 -13.39757 -13.24160 -13.02558 -12.89874 -12.74867 -12.67260 -12.63941 -12.46529 -12.34026 -12.24075 -12.04744 -11.70413 -11.63965 -11.37059 -11.25850 -10.91034 -10.57412 -9.90102 -9.72586 -8.75395 -8.16950 -6.25655 -0.14563 0.44283 1.35311 1.39487 1.47136 1.74643 1.86788 2.39343 2.86651 3.14362 3.54305 3.77906 3.87755 4.00814 4.14105 4.18114 4.23261 4.34310 4.38562 4.40356 4.50220 4.53858 4.62095 4.69192 4.73104 4.78557 4.86503 4.94735 5.05842 5.11434 5.15573 5.18878 5.36425 5.40848 5.44447 5.47447 5.50752 5.55357 5.65897 5.69156 6.00294 6.13010 6.49924 6.74972 6.90233 6.97839 7.42165 8.93689 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.006183 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.149329 B = 4527.624722 C = 6067.229827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.154 4.154 3 C 0.069 3.931 4 N -0.521 5.521 5 C 0.223 3.777 6 C -0.510 4.510 7 H 0.052 0.948 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.091 3.909 15 C -0.025 4.025 16 C -0.132 4.132 17 C -0.074 4.074 18 C -0.129 4.129 19 C -0.067 4.067 20 C -0.129 4.129 21 C 0.484 3.516 22 O -0.497 6.497 23 O -0.363 6.363 24 C 0.036 3.964 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.075 0.925 32 H -0.029 1.029 33 H -0.012 1.012 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.139 0.861 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.149 0.851 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.251 7.923 -18.942 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C -0.059 4.059 4 N -0.244 5.244 5 C 0.097 3.903 6 C -0.549 4.549 7 H 0.071 0.929 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.198 1.198 14 C -0.037 4.037 15 C -0.026 4.026 16 C -0.150 4.150 17 C -0.092 4.092 18 C -0.147 4.147 19 C -0.085 4.085 20 C -0.131 4.131 21 C 0.329 3.671 22 O -0.385 6.385 23 O -0.280 6.280 24 C -0.057 4.057 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.093 0.907 32 H -0.012 1.012 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.157 0.843 38 H 0.182 0.818 39 H 0.184 0.816 40 H 0.166 0.834 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.864 8.089 -18.475 20.747 hybrid contribution 0.432 -0.888 1.717 1.981 sum -4.432 7.201 -16.758 18.771 Atomic orbital electron populations 1.21595 0.93530 1.01922 1.02113 1.22037 0.97959 0.98780 1.00570 1.22050 0.87550 0.95443 1.00855 1.62102 1.06860 1.54568 1.00829 1.19191 0.92451 0.90869 0.87826 1.21349 1.33744 1.07955 0.91825 0.92930 1.25862 0.95161 0.96107 1.02578 1.70091 1.38833 1.22543 1.26241 0.85514 0.78839 0.78490 0.78222 1.19054 1.20595 1.19841 1.21035 0.99998 0.93931 0.88723 1.19960 0.94454 0.93313 0.94887 1.21224 0.96607 1.01677 0.95536 1.21776 0.98628 0.92931 0.95874 1.21531 0.95138 0.97908 1.00123 1.21655 0.96791 0.98249 0.91829 1.19049 0.97849 0.98122 0.98046 1.21762 0.82032 0.79429 0.83920 1.91016 1.65938 1.50229 1.31276 1.86459 1.46764 1.40218 1.54595 1.23392 0.87547 1.03303 0.91457 0.93510 0.90890 0.92178 0.91951 0.94852 0.93109 0.90685 1.01153 0.99357 0.92912 0.92069 0.94508 0.84322 0.81773 0.81634 0.83369 0.93727 0.92684 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.91 71.98 0.71 -3.07 16 2 C -0.15 -5.71 5.27 30.59 0.16 -5.55 16 3 C 0.07 2.83 4.99 86.30 0.43 3.26 16 4 N -0.52 -24.69 3.50 -905.35 -3.17 -27.86 16 5 C 0.22 12.94 4.24 85.56 0.36 13.30 16 6 C -0.51 -31.16 8.52 25.60 0.22 -30.94 16 7 H 0.05 3.19 7.10 -2.91 -0.02 3.17 16 8 C 0.00 0.01 5.46 84.66 0.46 0.47 16 9 N -0.94 -59.74 13.29 21.45 0.28 -59.46 16 10 Si 0.96 47.07 29.54 68.60 2.03 49.10 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.09 3.70 3.97 85.55 0.34 4.04 16 15 C -0.03 -0.82 4.56 -19.60 -0.09 -0.91 16 16 C -0.13 -3.12 9.08 22.23 0.20 -2.91 16 17 C -0.07 -1.24 10.04 22.33 0.22 -1.01 16 18 C -0.13 -2.11 10.03 22.23 0.22 -1.89 16 19 C -0.07 -1.53 9.62 22.54 0.22 -1.31 16 20 C -0.13 -4.12 5.87 -20.09 -0.12 -4.24 16 21 C 0.48 18.36 7.86 70.33 0.55 18.91 16 22 O -0.50 -23.56 11.92 19.94 0.24 -23.32 16 23 O -0.36 -11.45 9.82 -56.18 -0.55 -12.00 16 24 C 0.04 0.99 10.56 113.37 1.20 2.18 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 2.12 6.22 -2.39 -0.01 2.11 16 29 H 0.03 1.51 6.39 -2.39 -0.02 1.50 16 30 H 0.05 2.32 6.87 -2.39 -0.02 2.30 16 31 H 0.07 2.65 6.81 -2.39 -0.02 2.64 16 32 H -0.03 -1.78 6.04 -2.39 -0.01 -1.79 16 33 H -0.01 -0.77 7.70 -2.39 -0.02 -0.79 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.06 2.86 6.12 -2.39 -0.01 2.84 16 36 H 0.04 1.42 5.79 -2.39 -0.01 1.40 16 37 H 0.14 2.88 7.99 -2.91 -0.02 2.86 16 38 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 39 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.15 2.83 7.61 -2.91 -0.02 2.81 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -77.92 347.29 4.92 -72.99 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.00 Total: 10.22 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.10 Total: -9.67 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.88 Total: -87.32 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.31 Total: -35.32 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -77.92 4.92 -72.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137789358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.027 kcal (2) G-P(sol) polarization free energy of solvation -77.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds