Wall clock time and date at job start Tue Mar 31 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47289 * 2 1 4 4 N 1.46902 * 109.47125 * 185.49518 * 3 2 1 5 5 C 1.46898 * 111.00047 * 300.36545 * 4 3 2 6 6 C 1.50699 * 109.47209 * 288.98700 * 5 4 3 7 7 H 1.08000 * 119.99930 * 4.92219 * 6 5 4 8 8 C 1.37871 * 120.00066 * 184.92499 * 6 5 4 9 9 N 1.31513 * 120.00377 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99915 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46903 * 90.00436 * 10 8 6 12 12 H 1.48500 * 109.47001 * 210.00147 * 10 8 6 13 13 H 1.48495 * 109.47340 * 330.00083 * 10 8 6 14 14 C 1.46898 * 110.99863 * 64.32109 * 4 3 2 15 15 C 1.50703 * 109.47344 * 66.04600 * 14 4 3 16 16 C 1.38290 * 119.97297 * 270.25319 * 15 14 4 17 17 C 1.38242 * 120.11037 * 180.25233 * 16 15 14 18 18 C 1.38162 * 120.05867 * 359.49334 * 17 16 15 19 19 C 1.38719 * 119.94250 * 0.25211 * 18 17 16 20 20 O 1.35920 * 120.05483 * 180.02562 * 19 18 17 21 21 C 1.34258 * 117.00219 * 68.87111 * 20 19 18 22 22 C 1.50703 * 120.00239 * 185.75049 * 21 20 19 23 23 O 1.20835 * 119.99786 * 5.74577 * 21 20 19 24 24 C 1.38122 * 119.97185 * 89.99689 * 15 14 4 25 25 H 1.09000 * 109.46831 * 300.00162 * 1 2 3 26 26 H 1.08998 * 109.47048 * 60.00028 * 1 2 3 27 27 H 1.08993 * 109.47186 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46831 * 239.99838 * 2 1 3 29 29 H 1.08998 * 109.47048 * 119.99972 * 2 1 3 30 30 H 1.09002 * 109.47377 * 65.49286 * 3 2 1 31 31 H 1.09008 * 109.47242 * 305.49220 * 3 2 1 32 32 H 1.08998 * 109.46961 * 48.99212 * 5 4 3 33 33 H 1.09003 * 109.47009 * 168.98465 * 5 4 3 34 34 H 0.96998 * 120.00282 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47553 * 306.04398 * 14 4 3 36 36 H 1.09005 * 109.47064 * 186.04514 * 14 4 3 37 37 H 1.08006 * 119.94396 * 0.02562 * 16 15 14 38 38 H 1.08007 * 119.97332 * 179.76770 * 17 16 15 39 39 H 1.08001 * 120.03306 * 180.22999 * 18 17 16 40 40 H 1.08992 * 109.47125 * 89.99899 * 22 21 20 41 41 H 1.09004 * 109.47019 * 209.99921 * 22 21 20 42 42 H 1.08999 * 109.46975 * 329.99454 * 22 21 20 43 43 H 1.07997 * 120.02834 * 0.02966 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5031 1.4445 -0.1326 5 6 4.1332 0.7146 0.9755 6 6 3.9947 1.5130 2.2461 7 1 3.4211 2.4281 2.2490 8 6 4.6002 1.0753 3.4048 9 7 4.4789 1.7717 4.5138 10 14 5.5917 -0.5079 3.4000 11 1 7.0073 -0.2043 3.0694 12 1 5.5213 -1.1401 4.7418 13 1 5.0348 -1.4377 2.3849 14 6 3.9149 0.8907 -1.4294 15 6 3.4533 1.8046 -2.5353 16 6 2.2079 1.6219 -3.1080 17 6 1.7838 2.4552 -4.1262 18 6 2.5993 3.4796 -4.5671 19 6 3.8469 3.6683 -3.9907 20 8 4.6509 4.6756 -4.4223 21 6 4.2583 5.9296 -4.1465 22 6 5.0276 7.0997 -4.7033 23 8 3.2880 6.1199 -3.4519 24 6 4.2724 2.8272 -2.9724 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7593 1.9271 0.9351 31 1 1.5986 1.9839 -0.8368 32 1 3.6443 -0.2518 1.0985 33 1 5.1898 0.5618 0.7557 34 1 4.9046 1.4636 5.3291 35 1 3.4682 -0.0946 -1.5621 36 1 5.0011 0.8042 -1.4591 37 1 1.5670 0.8245 -2.7617 38 1 0.8122 2.3082 -4.5745 39 1 2.2660 4.1327 -5.3600 40 1 4.6144 7.3780 -5.6727 41 1 4.9496 7.9446 -4.0190 42 1 6.0753 6.8229 -4.8208 43 1 5.2434 2.9718 -2.5224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138042696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:44 Heat of formation + Delta-G solvation = -48.908030 kcal Electronic energy + Delta-G solvation = -23355.205475 eV Core-core repulsion = 19979.928703 eV Total energy + Delta-G solvation = -3375.276772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30680 -39.18017 -37.49592 -36.53698 -32.80080 -32.57242 -31.16419 -31.04234 -29.64101 -27.70799 -26.30356 -23.92302 -23.43739 -22.13449 -21.90501 -20.52076 -19.19871 -17.88829 -17.00332 -16.70862 -16.64431 -16.30068 -15.24922 -15.08052 -14.73338 -14.28341 -14.13484 -13.84891 -13.51096 -13.33391 -13.14553 -12.94534 -12.83506 -12.53298 -12.27139 -11.98648 -11.77353 -11.65266 -11.37682 -11.23139 -11.09431 -10.90202 -10.82556 -10.69537 -10.56685 -10.28604 -9.89232 -9.86432 -9.27882 -8.77102 -8.60152 -8.53298 -7.28786 -6.02723 -3.99350 1.13136 1.40974 2.01989 2.71563 3.28411 3.36184 3.37031 3.79079 4.42882 4.52329 4.82226 4.86271 4.91789 4.98386 5.00657 5.14695 5.30313 5.32424 5.36801 5.42551 5.44223 5.53483 5.63854 5.73897 5.83927 5.98679 6.03620 6.04789 6.23040 6.29507 6.30659 6.38049 6.45026 6.47188 6.53350 6.70795 6.83832 6.94413 6.95395 7.03878 7.61634 7.74250 7.90929 8.04029 8.68082 9.07388 9.58785 11.10650 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.004316 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.092889 B = 6485.230757 C = 7486.092862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.061 3.939 4 N -0.518 5.518 5 C 0.159 3.841 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.081 3.919 15 C -0.046 4.046 16 C -0.111 4.111 17 C -0.107 4.107 18 C -0.132 4.132 19 C 0.078 3.922 20 O -0.295 6.295 21 C 0.451 3.549 22 C -0.143 4.143 23 O -0.490 6.490 24 C -0.095 4.095 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.061 0.939 32 H -0.003 1.003 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 2.646 -20.867 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C -0.067 4.067 4 N -0.240 5.240 5 C 0.033 3.967 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.701 3.299 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.046 4.046 15 C -0.046 4.046 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.151 4.151 19 C 0.037 3.963 20 O -0.211 6.211 21 C 0.295 3.705 22 C -0.200 4.200 23 O -0.374 6.374 24 C -0.114 4.114 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.248 3.192 -20.387 20.757 hybrid contribution 0.255 -1.632 0.165 1.660 sum -1.993 1.559 -20.222 20.379 Atomic orbital electron populations 1.21660 0.96186 1.00768 1.01536 1.22197 0.95835 1.00381 1.01953 1.22163 0.87749 0.94376 1.02444 1.62236 1.07263 1.54344 1.00192 1.20259 0.93640 0.92962 0.89847 1.21004 1.32612 1.09639 0.90967 0.90216 1.24882 0.96211 0.96709 0.95494 1.69892 1.44883 1.38879 1.00341 0.86898 0.81117 0.84496 0.77434 1.20204 1.21262 1.19344 1.21156 1.00520 0.94025 0.88942 1.19773 0.93511 0.95710 0.95629 1.21193 0.95790 0.99826 0.96108 1.20900 0.99319 0.95055 0.97245 1.21131 0.93402 0.99581 1.00949 1.18485 0.91309 0.89654 0.96866 1.84600 1.50002 1.14788 1.71709 1.24260 0.84000 0.84041 0.78227 1.21613 1.01631 0.93212 1.03523 1.90765 1.27048 1.85325 1.34304 1.20965 1.01312 0.95352 0.93734 0.92528 0.93353 0.93518 0.92906 0.90884 0.89778 0.92104 0.98556 0.96069 0.92718 0.94007 0.90344 0.85637 0.85590 0.86180 0.87701 0.87660 0.88566 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.16 -2.74 5.17 -26.73 -0.14 -2.88 16 3 C 0.06 1.16 4.84 -3.83 -0.02 1.14 16 4 N -0.52 -10.77 4.65 -237.51 -1.11 -11.87 16 5 C 0.16 3.79 3.62 -4.98 -0.02 3.77 16 6 C -0.50 -14.31 9.22 -34.44 -0.32 -14.63 16 7 H 0.08 2.50 7.52 -52.49 -0.39 2.11 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 10 Si 0.87 21.44 27.37 -169.99 -4.65 16.79 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.31 6.69 56.52 0.38 -5.93 16 14 C 0.08 1.38 4.94 -4.98 -0.02 1.36 16 15 C -0.05 -0.71 4.90 -104.64 -0.51 -1.22 16 16 C -0.11 -1.52 7.89 -39.56 -0.31 -1.83 16 17 C -0.11 -1.34 10.04 -39.61 -0.40 -1.74 16 18 C -0.13 -1.77 9.32 -39.43 -0.37 -2.14 16 19 C 0.08 1.15 5.28 -39.21 -0.21 0.95 16 20 O -0.30 -3.95 10.04 -23.59 -0.24 -4.19 16 21 C 0.45 5.63 7.84 36.01 0.28 5.91 16 22 C -0.14 -0.95 10.41 36.01 0.38 -0.57 16 23 O -0.49 -8.15 16.51 -18.76 -0.31 -8.46 16 24 C -0.09 -1.49 9.64 -39.43 -0.38 -1.87 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.81 5.86 -51.93 -0.30 0.50 16 29 H 0.07 1.39 6.47 -51.93 -0.34 1.06 16 30 H 0.08 1.83 7.12 -51.93 -0.37 1.46 16 31 H 0.06 1.07 5.84 -51.92 -0.30 0.77 16 32 H 0.00 -0.07 5.29 -51.93 -0.27 -0.35 16 33 H 0.02 0.51 6.99 -51.93 -0.36 0.14 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.04 0.66 5.99 -51.93 -0.31 0.35 16 36 H 0.08 1.29 7.81 -51.93 -0.41 0.89 16 37 H 0.13 1.56 7.59 -52.48 -0.40 1.16 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -33.54 349.73 -8.45 -41.99 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.42 Total: 0.94 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.77 Total: -13.50 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.33 Total: -38.85 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.55 Total: -12.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.54 -8.45 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138042696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.914 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds