Wall clock time and date at job start Tue Mar 31 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47289 * 2 1 4 4 N 1.46902 * 109.47125 * 185.49518 * 3 2 1 5 5 C 1.46898 * 111.00047 * 300.36545 * 4 3 2 6 6 C 1.50699 * 109.47209 * 288.98700 * 5 4 3 7 7 H 1.08000 * 119.99930 * 4.92219 * 6 5 4 8 8 C 1.37871 * 120.00066 * 184.92499 * 6 5 4 9 9 N 1.31513 * 120.00377 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99915 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46903 * 90.00436 * 10 8 6 12 12 H 1.48500 * 109.47001 * 210.00147 * 10 8 6 13 13 H 1.48495 * 109.47340 * 330.00083 * 10 8 6 14 14 C 1.46898 * 110.99863 * 64.32109 * 4 3 2 15 15 C 1.50703 * 109.47344 * 66.04600 * 14 4 3 16 16 C 1.38290 * 119.97297 * 270.25319 * 15 14 4 17 17 C 1.38242 * 120.11037 * 180.25233 * 16 15 14 18 18 C 1.38162 * 120.05867 * 359.49334 * 17 16 15 19 19 C 1.38719 * 119.94250 * 0.25211 * 18 17 16 20 20 O 1.35920 * 120.05483 * 180.02562 * 19 18 17 21 21 C 1.34258 * 117.00219 * 68.87111 * 20 19 18 22 22 C 1.50703 * 120.00239 * 185.75049 * 21 20 19 23 23 O 1.20835 * 119.99786 * 5.74577 * 21 20 19 24 24 C 1.38122 * 119.97185 * 89.99689 * 15 14 4 25 25 H 1.09000 * 109.46831 * 300.00162 * 1 2 3 26 26 H 1.08998 * 109.47048 * 60.00028 * 1 2 3 27 27 H 1.08993 * 109.47186 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46831 * 239.99838 * 2 1 3 29 29 H 1.08998 * 109.47048 * 119.99972 * 2 1 3 30 30 H 1.09002 * 109.47377 * 65.49286 * 3 2 1 31 31 H 1.09008 * 109.47242 * 305.49220 * 3 2 1 32 32 H 1.08998 * 109.46961 * 48.99212 * 5 4 3 33 33 H 1.09003 * 109.47009 * 168.98465 * 5 4 3 34 34 H 0.96998 * 120.00282 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47553 * 306.04398 * 14 4 3 36 36 H 1.09005 * 109.47064 * 186.04514 * 14 4 3 37 37 H 1.08006 * 119.94396 * 0.02562 * 16 15 14 38 38 H 1.08007 * 119.97332 * 179.76770 * 17 16 15 39 39 H 1.08001 * 120.03306 * 180.22999 * 18 17 16 40 40 H 1.08992 * 109.47125 * 89.99899 * 22 21 20 41 41 H 1.09004 * 109.47019 * 209.99921 * 22 21 20 42 42 H 1.08999 * 109.46975 * 329.99454 * 22 21 20 43 43 H 1.07997 * 120.02834 * 0.02966 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5031 1.4445 -0.1326 5 6 4.1332 0.7146 0.9755 6 6 3.9947 1.5130 2.2461 7 1 3.4211 2.4281 2.2490 8 6 4.6002 1.0753 3.4048 9 7 4.4789 1.7717 4.5138 10 14 5.5917 -0.5079 3.4000 11 1 7.0073 -0.2043 3.0694 12 1 5.5213 -1.1401 4.7418 13 1 5.0348 -1.4377 2.3849 14 6 3.9149 0.8907 -1.4294 15 6 3.4533 1.8046 -2.5353 16 6 2.2079 1.6219 -3.1080 17 6 1.7838 2.4552 -4.1262 18 6 2.5993 3.4796 -4.5671 19 6 3.8469 3.6683 -3.9907 20 8 4.6509 4.6756 -4.4223 21 6 4.2583 5.9296 -4.1465 22 6 5.0276 7.0997 -4.7033 23 8 3.2880 6.1199 -3.4519 24 6 4.2724 2.8272 -2.9724 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7593 1.9271 0.9351 31 1 1.5986 1.9839 -0.8368 32 1 3.6443 -0.2518 1.0985 33 1 5.1898 0.5618 0.7557 34 1 4.9046 1.4636 5.3291 35 1 3.4682 -0.0946 -1.5621 36 1 5.0011 0.8042 -1.4591 37 1 1.5670 0.8245 -2.7617 38 1 0.8122 2.3082 -4.5745 39 1 2.2660 4.1327 -5.3600 40 1 4.6144 7.3780 -5.6727 41 1 4.9496 7.9446 -4.0190 42 1 6.0753 6.8229 -4.8208 43 1 5.2434 2.9718 -2.5224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138042696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:44 Heat of formation + Delta-G solvation = -69.763832 kcal Electronic energy + Delta-G solvation = -23356.109850 eV Core-core repulsion = 19979.928703 eV Total energy + Delta-G solvation = -3376.181147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34317 -40.39536 -38.83434 -37.71126 -34.83001 -33.91531 -32.53719 -32.00223 -30.55673 -29.51812 -27.63536 -25.50991 -24.45100 -23.62895 -23.15912 -21.74516 -20.67786 -19.05662 -18.77414 -17.97028 -17.72345 -17.36986 -16.74594 -16.60251 -16.19741 -15.68064 -15.41749 -15.24895 -14.71933 -14.55644 -14.50923 -14.11317 -13.86329 -13.59677 -13.40488 -13.27661 -13.07907 -12.97496 -12.74984 -12.66529 -12.46908 -12.43531 -12.29842 -12.04675 -11.90541 -11.79801 -11.59192 -11.43041 -11.33752 -10.76200 -9.88932 -9.69744 -8.88212 -8.27197 -6.29923 0.06138 0.30748 1.05586 1.34193 1.35637 1.46375 1.79297 2.34463 2.69277 3.06005 3.42379 3.61856 3.77952 3.87444 4.04903 4.10323 4.11637 4.27559 4.30486 4.39956 4.44996 4.52622 4.56541 4.57088 4.66375 4.75654 4.79375 4.92489 4.96812 5.01090 5.03462 5.09655 5.22998 5.25924 5.33091 5.36031 5.45410 5.46966 5.54910 5.61354 5.90223 6.00337 6.39366 6.66263 6.74077 6.75747 7.32870 8.90105 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.004316 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.092889 B = 6485.230757 C = 7486.092862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C 0.067 3.933 4 N -0.542 5.542 5 C 0.171 3.829 6 C -0.511 4.511 7 H 0.029 0.971 8 C 0.006 3.994 9 N -0.951 5.951 10 Si 0.948 3.052 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.247 1.247 14 C 0.086 3.914 15 C -0.060 4.060 16 C -0.112 4.112 17 C -0.099 4.099 18 C -0.136 4.136 19 C 0.061 3.939 20 O -0.297 6.297 21 C 0.448 3.552 22 C -0.135 4.135 23 O -0.540 6.540 24 C -0.117 4.117 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.004 0.996 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 1.195 -23.777 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C -0.061 4.061 4 N -0.264 5.264 5 C 0.044 3.956 6 C -0.550 4.550 7 H 0.048 0.952 8 C -0.190 4.190 9 N -0.592 5.592 10 Si 0.771 3.229 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.170 1.170 14 C -0.041 4.041 15 C -0.061 4.061 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.154 4.154 19 C 0.021 3.979 20 O -0.212 6.212 21 C 0.294 3.706 22 C -0.191 4.191 23 O -0.428 6.428 24 C -0.136 4.136 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.162 0.838 38 H 0.179 0.821 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.463 1.743 -23.338 23.532 hybrid contribution 0.275 -1.024 1.002 1.459 sum -2.188 0.718 -22.336 22.454 Atomic orbital electron populations 1.21635 0.93906 1.02210 1.01959 1.22088 0.97830 0.98044 1.01544 1.22048 0.87109 0.96124 1.00833 1.62047 1.08222 1.55021 1.01156 1.19983 0.94155 0.92509 0.88967 1.21236 1.31680 1.08448 0.93591 0.95245 1.25853 0.97531 1.00870 0.94768 1.70064 1.46526 1.41363 1.01296 0.85708 0.79462 0.79647 0.78081 1.19130 1.20842 1.17043 1.21147 1.00736 0.95074 0.87175 1.19700 0.94640 0.95914 0.95810 1.21412 0.95031 1.00436 0.96162 1.21303 1.00377 0.93738 0.96294 1.21454 0.92817 1.00028 1.01131 1.18705 0.92211 0.90054 0.96974 1.84625 1.50011 1.15150 1.71464 1.25482 0.83564 0.84491 0.77035 1.21813 1.02039 0.90598 1.04625 1.90741 1.29506 1.85726 1.36784 1.21020 1.01405 0.96369 0.94807 0.93901 0.91210 0.91536 0.90699 0.93683 0.94034 0.90498 0.97842 0.95670 0.92524 0.92159 0.90395 0.83835 0.82055 0.84394 0.84714 0.86969 0.86534 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.16 -5.00 5.17 30.59 0.16 -4.84 16 3 C 0.07 2.58 4.84 86.30 0.42 2.99 16 4 N -0.54 -22.80 4.65 -905.36 -4.21 -27.02 16 5 C 0.17 8.20 3.62 85.56 0.31 8.51 16 6 C -0.51 -30.33 9.22 25.60 0.24 -30.10 16 7 H 0.03 1.98 7.52 -2.91 -0.02 1.96 16 8 C 0.01 0.38 5.47 84.65 0.46 0.85 16 9 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 10 Si 0.95 44.45 27.37 68.60 1.88 46.33 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.25 -10.63 6.69 99.48 0.67 -9.97 16 14 C 0.09 2.83 4.94 85.56 0.42 3.25 16 15 C -0.06 -1.81 4.90 -19.88 -0.10 -1.91 16 16 C -0.11 -2.78 7.89 22.28 0.18 -2.61 16 17 C -0.10 -2.18 10.04 22.25 0.22 -1.96 16 18 C -0.14 -3.39 9.32 22.37 0.21 -3.18 16 19 C 0.06 1.80 5.28 22.51 0.12 1.92 16 20 O -0.30 -7.80 10.04 4.65 0.05 -7.75 16 21 C 0.45 10.87 7.84 71.24 0.56 11.43 16 22 C -0.13 -1.49 10.41 71.24 0.74 -0.75 16 23 O -0.54 -18.08 16.51 21.94 0.36 -17.71 16 24 C -0.12 -3.71 9.64 22.37 0.22 -3.49 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 2.06 5.86 -2.39 -0.01 2.05 16 29 H 0.04 1.69 6.47 -2.39 -0.02 1.68 16 30 H 0.04 1.92 7.12 -2.39 -0.02 1.90 16 31 H 0.08 2.68 5.84 -2.38 -0.01 2.66 16 32 H 0.00 0.19 5.29 -2.39 -0.01 0.17 16 33 H 0.03 1.19 6.99 -2.39 -0.02 1.17 16 34 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.06 1.75 5.99 -2.39 -0.01 1.74 16 36 H 0.08 2.53 7.81 -2.38 -0.02 2.51 16 37 H 0.14 3.01 7.59 -2.91 -0.02 2.98 16 38 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.12 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -77.47 349.73 4.19 -73.28 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.95 Total: 16.23 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.87 Total: -22.75 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.92 Total: -87.62 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.41 Total: -25.47 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -77.47 4.19 -73.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138042696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.514 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds