Wall clock time and date at job start Tue Mar 31 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 H 1.09000 * 109.46634 * 304.49940 * 3 2 1 5 5 C 1.50696 * 109.46714 * 184.50270 * 3 2 1 6 6 H 1.08011 * 119.99524 * 239.99756 * 5 3 2 7 7 C 1.37872 * 120.00331 * 59.99891 * 5 3 2 8 8 N 1.31512 * 120.00384 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00067 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46658 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46992 * 119.99879 * 9 7 5 12 12 H 1.48494 * 109.47109 * 240.00235 * 9 7 5 13 13 N 1.46899 * 109.47242 * 64.49985 * 3 2 1 14 14 C 1.46904 * 110.99967 * 209.04447 * 13 3 2 15 15 H 1.08997 * 109.69083 * 32.36118 * 14 13 3 16 16 C 1.53404 * 109.69542 * 271.79751 * 14 13 3 17 17 O 1.42826 * 108.38473 * 175.60780 * 16 14 13 18 18 C 1.35845 * 117.87603 * 49.16461 * 17 16 14 19 19 C 1.39203 * 118.47339 * 162.87216 * 18 17 16 20 20 C 1.37999 * 120.33195 * 179.71026 * 19 18 17 21 21 C 1.38200 * 120.01710 * 359.92623 * 20 19 18 22 22 C 1.38614 * 119.91991 * 0.12783 * 21 20 19 23 23 O 1.35901 * 119.89936 * 179.97438 * 22 21 20 24 24 C 1.42896 * 117.00010 * 359.97438 * 23 22 21 25 25 C 1.38276 * 121.79797 * 342.95977 * 18 17 16 26 26 C 1.50754 * 121.42881 * 0.13620 * 25 18 17 27 27 H 1.08996 * 109.47293 * 294.95999 * 1 2 3 28 28 H 1.09006 * 109.47012 * 54.95695 * 1 2 3 29 29 H 1.08998 * 109.47056 * 174.94893 * 1 2 3 30 30 H 1.08998 * 109.47221 * 239.99890 * 2 1 3 31 31 H 1.08995 * 109.46383 * 119.99659 * 2 1 3 32 32 H 0.96997 * 120.00533 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99858 * 85.08844 * 13 3 2 34 34 H 1.09002 * 109.68058 * 55.88433 * 16 14 13 35 35 H 1.08998 * 109.71352 * 295.35111 * 16 14 13 36 36 H 1.07995 * 119.83566 * 359.68129 * 19 18 17 37 37 H 1.07998 * 119.99095 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.04355 * 180.10616 * 21 20 19 39 39 H 1.08998 * 109.46986 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.47179 * 60.00342 * 24 23 22 41 41 H 1.09002 * 109.47260 * 300.00340 * 24 23 22 42 42 H 1.09001 * 109.57063 * 222.31954 * 26 25 18 43 43 H 1.08998 * 109.24129 * 102.48731 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6123 1.9790 -0.8470 5 6 3.5429 1.4439 -0.1115 6 1 4.1418 1.8908 0.6683 7 6 4.1533 0.8748 -1.2090 8 7 3.4241 0.3302 -2.1583 9 14 6.0162 0.8772 -1.3475 10 1 6.6001 1.5457 -0.1570 11 1 6.5089 -0.5218 -1.4205 12 1 6.4203 1.6091 -2.5747 13 7 1.6411 2.1030 1.2500 14 6 1.4706 3.5484 1.0506 15 1 1.1129 3.7399 0.0390 16 6 2.8108 4.2621 1.2693 17 8 2.6375 5.6477 0.9689 18 6 1.5799 6.2913 1.5280 19 6 1.5876 7.6831 1.5529 20 6 0.5303 8.3761 2.1061 21 6 -0.5444 7.6888 2.6378 22 6 -0.5574 6.3029 2.6170 23 8 -1.6141 5.6274 3.1404 24 6 -2.6737 6.4095 3.6948 25 6 0.5098 5.6018 2.0679 26 6 0.4640 4.0950 2.0660 27 1 -0.3634 0.4336 0.9316 28 1 -0.3633 0.5901 -0.8414 29 1 -0.3633 -1.0237 -0.0905 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8535 -0.0705 -2.9303 33 1 2.3053 1.9153 1.9860 34 1 3.5660 3.8351 0.6094 35 1 3.1232 4.1477 2.3072 36 1 2.4255 8.2233 1.1376 37 1 0.5422 9.4559 2.1229 38 1 -1.3729 8.2308 3.0693 39 1 -3.4515 5.7485 4.0772 40 1 -3.0921 7.0543 2.9219 41 1 -2.2857 7.0223 4.5084 42 1 -0.5385 3.7605 1.7991 43 1 0.7157 3.7267 3.0606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173149623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:52 Heat of formation + Delta-G solvation = -58.201733 kcal Electronic energy + Delta-G solvation = -23840.711751 eV Core-core repulsion = 20465.031974 eV Total energy + Delta-G solvation = -3375.679777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71383 -39.04021 -36.82072 -35.99786 -33.73563 -31.92217 -31.09368 -29.62396 -28.45771 -27.27390 -26.03266 -25.26118 -23.06613 -22.27508 -21.87828 -19.88863 -19.31869 -18.31241 -16.90854 -16.56708 -16.10879 -15.80952 -15.62765 -14.94838 -14.82235 -14.68408 -13.87205 -13.61068 -13.38980 -13.15715 -12.95429 -12.88414 -12.61270 -12.29417 -11.95217 -11.72752 -11.55673 -11.35432 -11.18003 -11.04130 -10.82869 -10.76348 -10.70615 -10.49692 -10.31585 -10.06032 -9.59852 -9.45414 -9.04359 -8.42950 -8.17763 -7.96676 -7.36837 -6.05620 -4.19243 1.42999 1.53407 3.20200 3.23668 3.32801 3.34613 3.63810 3.85216 4.34779 4.75482 4.87718 4.99805 5.02978 5.12203 5.17806 5.24872 5.31462 5.36810 5.42349 5.48975 5.62750 5.75343 5.89366 6.00482 6.20403 6.36708 6.38678 6.42738 6.47449 6.50514 6.55905 6.61645 6.70501 6.77850 7.10216 7.16466 7.34720 7.39783 7.53565 7.69335 7.74622 8.03896 8.04470 8.25636 8.55769 8.92579 9.49018 10.94796 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.004489 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.297526 B = 6235.343741 C = 7386.117932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.213 3.787 4 H 0.033 0.967 5 C -0.550 4.550 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.674 5.674 14 C 0.067 3.933 15 H 0.083 0.917 16 C 0.029 3.971 17 O -0.312 6.312 18 C 0.173 3.827 19 C -0.190 4.190 20 C -0.055 4.055 21 C -0.249 4.249 22 C 0.159 3.841 23 O -0.310 6.310 24 C 0.029 3.971 25 C -0.186 4.186 26 C -0.056 4.056 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.331 0.669 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 12.462 9.661 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.051 0.949 5 C -0.589 4.589 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.518 5.518 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.304 5.304 14 C -0.044 4.044 15 H 0.101 0.899 16 C -0.047 4.047 17 O -0.224 6.224 18 C 0.127 3.873 19 C -0.209 4.209 20 C -0.074 4.074 21 C -0.268 4.268 22 C 0.113 3.887 23 O -0.223 6.223 24 C -0.067 4.067 25 C -0.188 4.188 26 C -0.094 4.094 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.917 12.066 9.273 17.638 hybrid contribution 1.783 0.374 -0.081 1.823 sum -7.134 12.440 9.191 17.033 Atomic orbital electron populations 1.21697 0.98987 0.98321 1.00414 1.21497 0.92105 0.99078 1.01728 1.19287 0.92983 0.91378 0.85774 0.94863 1.21884 0.92456 1.38648 1.05901 0.92550 1.24922 0.97957 0.94780 0.95627 1.69880 1.34881 1.37644 1.09430 0.86623 0.85995 0.77814 0.78081 1.19829 1.20930 1.20966 1.60885 1.52956 1.05538 1.11019 1.22068 0.93038 0.90084 0.99249 0.89898 1.24282 1.01208 0.77391 1.01831 1.86040 1.43416 1.26042 1.66866 1.18539 0.86295 0.91280 0.91227 1.20495 1.01454 0.91218 1.07719 1.20581 0.92171 0.99301 0.95302 1.21000 1.02187 0.92709 1.10925 1.18609 0.86973 0.90022 0.93099 1.86095 1.27971 1.35499 1.72758 1.23030 0.88877 0.96971 0.97772 1.19274 0.94229 0.97104 1.08175 1.20316 1.01098 0.87972 0.99982 0.93427 0.94484 0.95656 0.89142 0.94996 0.92821 0.85177 0.85324 0.92584 0.85371 0.85561 0.85724 0.88378 0.92764 0.92825 0.89856 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.74 37.16 0.36 -2.43 16 2 C -0.11 -2.46 5.45 -26.73 -0.15 -2.61 16 3 C 0.21 5.05 2.00 -68.86 -0.14 4.91 16 4 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 5 C -0.55 -13.97 7.26 -34.44 -0.25 -14.22 16 6 H 0.06 1.40 6.77 -52.48 -0.36 1.04 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.61 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.49 5.60 -100.69 -0.56 -14.06 16 14 C 0.07 1.26 2.71 -67.46 -0.18 1.07 16 15 H 0.08 1.73 7.35 -51.93 -0.38 1.35 16 16 C 0.03 0.53 6.10 37.37 0.23 0.75 16 17 O -0.31 -5.69 10.27 -19.25 -0.20 -5.89 16 18 C 0.17 2.88 6.47 -39.21 -0.25 2.63 16 19 C -0.19 -2.68 9.93 -39.31 -0.39 -3.07 16 20 C -0.06 -0.66 10.03 -39.68 -0.40 -1.06 16 21 C -0.25 -3.04 9.03 -39.46 -0.36 -3.39 16 22 C 0.16 2.29 6.65 -39.16 -0.26 2.03 16 23 O -0.31 -4.16 9.64 -19.43 -0.19 -4.35 16 24 C 0.03 0.25 9.81 101.05 0.99 1.24 16 25 C -0.19 -3.03 5.76 -104.30 -0.60 -3.63 16 26 C -0.06 -0.94 5.09 -27.82 -0.14 -1.08 16 27 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.33 6.47 8.03 -39.29 -0.32 6.15 16 34 H 0.13 2.59 6.01 -51.93 -0.31 2.28 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.17 6.28 -52.48 -0.33 0.84 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 41 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 42 H 0.08 1.44 7.83 -51.93 -0.41 1.03 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -27.81 341.00 -8.35 -36.16 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.51 Total: 8.17 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.63 Total: -17.09 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.06 Total: -37.66 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.38 Total: -10.24 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.81 -8.35 -36.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173149623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.044 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds