Wall clock time and date at job start Tue Mar 31 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 H 1.09000 * 109.46634 * 304.49940 * 3 2 1 5 5 C 1.50696 * 109.46714 * 184.50270 * 3 2 1 6 6 H 1.08011 * 119.99524 * 239.99756 * 5 3 2 7 7 C 1.37872 * 120.00331 * 59.99891 * 5 3 2 8 8 N 1.31512 * 120.00384 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00067 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46658 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46992 * 119.99879 * 9 7 5 12 12 H 1.48494 * 109.47109 * 240.00235 * 9 7 5 13 13 N 1.46899 * 109.47242 * 64.49985 * 3 2 1 14 14 C 1.46904 * 110.99967 * 209.04447 * 13 3 2 15 15 H 1.08997 * 109.69083 * 32.36118 * 14 13 3 16 16 C 1.53404 * 109.69542 * 271.79751 * 14 13 3 17 17 O 1.42826 * 108.38473 * 175.60780 * 16 14 13 18 18 C 1.35845 * 117.87603 * 49.16461 * 17 16 14 19 19 C 1.39203 * 118.47339 * 162.87216 * 18 17 16 20 20 C 1.37999 * 120.33195 * 179.71026 * 19 18 17 21 21 C 1.38200 * 120.01710 * 359.92623 * 20 19 18 22 22 C 1.38614 * 119.91991 * 0.12783 * 21 20 19 23 23 O 1.35901 * 119.89936 * 179.97438 * 22 21 20 24 24 C 1.42896 * 117.00010 * 359.97438 * 23 22 21 25 25 C 1.38276 * 121.79797 * 342.95977 * 18 17 16 26 26 C 1.50754 * 121.42881 * 0.13620 * 25 18 17 27 27 H 1.08996 * 109.47293 * 294.95999 * 1 2 3 28 28 H 1.09006 * 109.47012 * 54.95695 * 1 2 3 29 29 H 1.08998 * 109.47056 * 174.94893 * 1 2 3 30 30 H 1.08998 * 109.47221 * 239.99890 * 2 1 3 31 31 H 1.08995 * 109.46383 * 119.99659 * 2 1 3 32 32 H 0.96997 * 120.00533 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99858 * 85.08844 * 13 3 2 34 34 H 1.09002 * 109.68058 * 55.88433 * 16 14 13 35 35 H 1.08998 * 109.71352 * 295.35111 * 16 14 13 36 36 H 1.07995 * 119.83566 * 359.68129 * 19 18 17 37 37 H 1.07998 * 119.99095 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.04355 * 180.10616 * 21 20 19 39 39 H 1.08998 * 109.46986 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.47179 * 60.00342 * 24 23 22 41 41 H 1.09002 * 109.47260 * 300.00340 * 24 23 22 42 42 H 1.09001 * 109.57063 * 222.31954 * 26 25 18 43 43 H 1.08998 * 109.24129 * 102.48731 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6123 1.9790 -0.8470 5 6 3.5429 1.4439 -0.1115 6 1 4.1418 1.8908 0.6683 7 6 4.1533 0.8748 -1.2090 8 7 3.4241 0.3302 -2.1583 9 14 6.0162 0.8772 -1.3475 10 1 6.6001 1.5457 -0.1570 11 1 6.5089 -0.5218 -1.4205 12 1 6.4203 1.6091 -2.5747 13 7 1.6411 2.1030 1.2500 14 6 1.4706 3.5484 1.0506 15 1 1.1129 3.7399 0.0390 16 6 2.8108 4.2621 1.2693 17 8 2.6375 5.6477 0.9689 18 6 1.5799 6.2913 1.5280 19 6 1.5876 7.6831 1.5529 20 6 0.5303 8.3761 2.1061 21 6 -0.5444 7.6888 2.6378 22 6 -0.5574 6.3029 2.6170 23 8 -1.6141 5.6274 3.1404 24 6 -2.6737 6.4095 3.6948 25 6 0.5098 5.6018 2.0679 26 6 0.4640 4.0950 2.0660 27 1 -0.3634 0.4336 0.9316 28 1 -0.3633 0.5901 -0.8414 29 1 -0.3633 -1.0237 -0.0905 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8535 -0.0705 -2.9303 33 1 2.3053 1.9153 1.9860 34 1 3.5660 3.8351 0.6094 35 1 3.1232 4.1477 2.3072 36 1 2.4255 8.2233 1.1376 37 1 0.5422 9.4559 2.1229 38 1 -1.3729 8.2308 3.0693 39 1 -3.4515 5.7485 4.0772 40 1 -3.0921 7.0543 2.9219 41 1 -2.2857 7.0223 4.5084 42 1 -0.5385 3.7605 1.7991 43 1 0.7157 3.7267 3.0606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173149623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:51 Heat of formation + Delta-G solvation = -74.874402 kcal Electronic energy + Delta-G solvation = -23841.434732 eV Core-core repulsion = 20465.031974 eV Total energy + Delta-G solvation = -3376.402758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89415 -40.16256 -38.30866 -37.29073 -35.36260 -33.68229 -32.59454 -30.76232 -29.87345 -28.12282 -27.84147 -26.60183 -24.77147 -23.68695 -22.97399 -21.60851 -20.87530 -19.39085 -18.59205 -17.96861 -17.33829 -16.97605 -16.70785 -16.54954 -16.18442 -15.89320 -15.55883 -14.99232 -14.73796 -14.70286 -14.44659 -14.18212 -13.85458 -13.58290 -13.24988 -13.20936 -13.00906 -12.85431 -12.75237 -12.60844 -12.48997 -12.16846 -12.02409 -11.95613 -11.77474 -11.55860 -11.46866 -11.18855 -10.92183 -10.45943 -9.36663 -9.12840 -8.98863 -8.06257 -6.27140 0.35726 0.45865 1.38142 1.41776 1.50401 2.22432 2.40151 2.46721 2.75491 3.14554 3.44428 3.75265 3.84378 3.96439 4.03744 4.11387 4.33333 4.35593 4.45391 4.49794 4.52892 4.57487 4.61673 4.69726 4.75423 4.78631 4.81970 4.93416 5.05142 5.17209 5.20980 5.32444 5.32942 5.41694 5.47321 5.52264 5.62188 5.69397 5.76802 6.07911 6.15922 6.29444 6.40240 6.53286 6.74382 6.99047 7.44257 8.91795 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.004489 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.297526 B = 6235.343741 C = 7386.117932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.222 3.778 4 H -0.004 1.004 5 C -0.555 4.555 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.664 5.664 14 C 0.073 3.927 15 H 0.053 0.947 16 C 0.039 3.961 17 O -0.329 6.329 18 C 0.142 3.858 19 C -0.200 4.200 20 C -0.043 4.043 21 C -0.240 4.240 22 C 0.152 3.848 23 O -0.332 6.332 24 C 0.018 3.982 25 C -0.211 4.211 26 C -0.041 4.041 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.337 0.663 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 14.484 11.539 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.594 4.594 6 H 0.079 0.921 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.294 5.294 14 C -0.038 4.038 15 H 0.071 0.929 16 C -0.037 4.037 17 O -0.242 6.242 18 C 0.097 3.903 19 C -0.218 4.218 20 C -0.061 4.061 21 C -0.258 4.258 22 C 0.106 3.894 23 O -0.245 6.245 24 C -0.076 4.076 25 C -0.213 4.213 26 C -0.078 4.078 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.156 0.844 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.806 14.104 11.175 20.493 hybrid contribution 1.925 -0.130 -0.614 2.025 sum -7.881 13.974 10.561 19.208 Atomic orbital electron populations 1.21561 0.96679 0.99510 1.00482 1.21364 0.94167 0.98270 1.00269 1.19032 0.92082 0.91532 0.85983 0.98615 1.22194 0.93478 1.37868 1.05846 0.92143 1.25634 1.01852 0.94772 0.95548 1.70013 1.36367 1.38625 1.09929 0.85680 0.81354 0.77685 0.77960 1.19064 1.20690 1.21193 1.60815 1.52652 1.06427 1.09497 1.21956 0.94159 0.89297 0.98419 0.92912 1.23980 0.99935 0.77947 1.01876 1.85985 1.44703 1.25518 1.67959 1.18889 0.86234 0.92383 0.92822 1.20787 1.02796 0.90198 1.08057 1.21058 0.90740 1.01206 0.93106 1.21424 1.03046 0.91808 1.09570 1.18736 0.86800 0.90992 0.92896 1.86070 1.28545 1.37119 1.72793 1.23377 0.88056 0.97650 0.98529 1.19294 0.95533 0.96517 1.09987 1.20085 0.99580 0.89043 0.99110 0.92427 0.95448 0.93670 0.92001 0.94884 0.92955 0.84578 0.87765 0.91134 0.84391 0.81558 0.82289 0.86647 0.91474 0.91182 0.90711 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.74 71.98 0.70 -4.41 16 2 C -0.10 -4.87 5.45 30.60 0.17 -4.70 16 3 C 0.22 10.92 2.00 44.17 0.09 11.01 16 4 H 0.00 -0.23 7.33 -2.39 -0.02 -0.25 16 5 C -0.55 -28.93 7.26 25.60 0.19 -28.74 16 6 H 0.06 3.04 6.77 -2.91 -0.02 3.02 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -51.69 11.29 21.44 0.24 -51.45 16 9 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 N -0.66 -27.28 5.60 -472.49 -2.65 -29.92 16 14 C 0.07 2.84 2.71 45.07 0.12 2.97 16 15 H 0.05 2.36 7.35 -2.39 -0.02 2.34 16 16 C 0.04 1.47 6.10 72.12 0.44 1.91 16 17 O -0.33 -12.36 10.27 -91.81 -0.94 -13.30 16 18 C 0.14 4.72 6.47 22.51 0.15 4.87 16 19 C -0.20 -5.30 9.93 22.44 0.22 -5.08 16 20 C -0.04 -0.87 10.03 22.20 0.22 -0.65 16 21 C -0.24 -4.97 9.03 22.35 0.20 -4.77 16 22 C 0.15 4.11 6.65 22.54 0.15 4.26 16 23 O -0.33 -8.26 9.64 -92.43 -0.89 -9.15 16 24 C 0.02 0.25 9.81 113.37 1.11 1.36 16 25 C -0.21 -6.84 5.76 -19.66 -0.11 -6.95 16 26 C -0.04 -1.38 5.09 29.89 0.15 -1.23 16 27 H 0.06 2.22 7.88 -2.39 -0.02 2.20 16 28 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 3.34 5.96 -2.39 -0.01 3.32 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.34 13.27 8.03 -89.69 -0.72 12.55 16 34 H 0.10 4.40 6.01 -2.39 -0.01 4.39 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 36 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.16 2.16 6.28 -2.91 -0.02 2.14 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.07 0.76 7.65 -2.39 -0.02 0.75 16 41 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 42 H 0.07 2.63 7.83 -2.39 -0.02 2.61 16 43 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -62.08 341.00 2.33 -59.75 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.29 Total: 27.69 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.25 Total: -28.51 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.40 Total: -81.37 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.83 Total: -22.45 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -62.08 2.33 -59.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173149623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.122 kcal (2) G-P(sol) polarization free energy of solvation -62.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds