Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 H 1.08995 * 109.47083 * 304.04793 * 3 2 1 5 5 C 1.50705 * 109.46735 * 184.05100 * 3 2 1 6 6 H 1.08008 * 119.99346 * 239.99789 * 5 3 2 7 7 C 1.37869 * 120.00371 * 59.99812 * 5 3 2 8 8 N 1.31515 * 120.00172 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46957 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46822 * 120.00368 * 9 7 5 12 12 H 1.48499 * 109.47325 * 240.00328 * 9 7 5 13 13 N 1.46898 * 109.47093 * 64.05068 * 3 2 1 14 14 C 1.46902 * 110.99806 * 204.23915 * 13 3 2 15 15 H 1.09004 * 109.73054 * 325.16034 * 14 13 3 16 16 C 1.53409 * 109.70027 * 85.74441 * 14 13 3 17 17 O 1.42826 * 108.40744 * 184.39541 * 16 14 13 18 18 C 1.35856 * 117.87382 * 310.80618 * 17 16 14 19 19 C 1.39195 * 118.47586 * 197.18174 * 18 17 16 20 20 C 1.37998 * 120.33282 * 180.15520 * 19 18 17 21 21 C 1.38203 * 120.01882 * 0.04866 * 20 19 18 22 22 C 1.38619 * 119.91736 * 359.91967 * 21 20 19 23 23 O 1.35895 * 119.90158 * 179.97438 * 22 21 20 24 24 C 1.42904 * 116.99788 * 359.97438 * 23 22 21 25 25 C 1.38274 * 121.79296 * 17.24150 * 18 17 16 26 26 C 1.50762 * 121.43385 * 359.47910 * 25 18 17 27 27 H 1.09003 * 109.47228 * 294.91341 * 1 2 3 28 28 H 1.08999 * 109.47092 * 54.91292 * 1 2 3 29 29 H 1.08999 * 109.46942 * 174.91433 * 1 2 3 30 30 H 1.08996 * 109.46993 * 240.00274 * 2 1 3 31 31 H 1.09002 * 109.47132 * 120.00092 * 2 1 3 32 32 H 0.96996 * 120.00397 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00199 * 80.28410 * 13 3 2 34 34 H 1.09006 * 109.68179 * 64.66224 * 16 14 13 35 35 H 1.08995 * 109.68410 * 304.14140 * 16 14 13 36 36 H 1.07999 * 119.84174 * 0.18001 * 19 18 17 37 37 H 1.07993 * 119.99542 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.04452 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.46530 * 180.02562 * 24 23 22 40 40 H 1.08996 * 109.46721 * 299.99784 * 24 23 22 41 41 H 1.08992 * 109.47025 * 60.00382 * 24 23 22 42 42 H 1.09001 * 109.43016 * 137.90193 * 26 25 18 43 43 H 1.08991 * 109.43710 * 257.81903 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6186 1.9768 -0.8515 5 6 3.5437 1.4437 -0.1004 6 1 4.1367 1.8926 0.6827 7 6 4.1622 0.8717 -1.1917 8 7 3.4400 0.3255 -2.1455 9 14 6.0261 0.8738 -1.3164 10 1 6.6012 1.5454 -0.1234 11 1 6.5193 -0.5254 -1.3822 12 1 6.4394 1.6025 -2.5426 13 7 1.6318 2.1062 1.2453 14 6 1.5731 3.5636 1.0704 15 1 2.3580 3.8838 0.3851 16 6 0.2022 3.9623 0.5091 17 8 0.2108 5.3675 0.2536 18 6 0.6551 6.1897 1.2396 19 6 0.3417 7.5439 1.1660 20 6 0.7761 8.4140 2.1451 21 6 1.5272 7.9427 3.2052 22 6 1.8419 6.5950 3.2844 23 8 2.5809 6.1320 4.3267 24 6 2.9988 7.0896 5.3016 25 6 1.4039 5.7158 2.3011 26 6 1.7567 4.2552 2.4244 27 1 -0.3634 0.4329 0.9321 28 1 -0.3633 0.5907 -0.8409 29 1 -0.3633 -1.0236 -0.0911 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8751 -0.0766 -2.9135 33 1 2.2466 1.8577 2.0058 34 1 -0.5749 3.7262 1.2362 35 1 0.0138 3.4216 -0.4183 36 1 -0.2447 7.9156 0.3388 37 1 0.5295 9.4635 2.0828 38 1 1.8677 8.6233 3.9715 39 1 3.5795 6.5893 6.0766 40 1 3.6135 7.8515 4.8223 41 1 2.1225 7.5584 5.7493 42 1 2.7946 4.1585 2.7432 43 1 1.1055 3.7858 3.1616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173149629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = -58.960986 kcal Electronic energy + Delta-G solvation = -23821.334883 eV Core-core repulsion = 20445.622183 eV Total energy + Delta-G solvation = -3375.712701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73814 -39.05061 -36.78596 -36.04948 -33.76459 -31.90471 -30.98786 -29.71890 -28.54089 -27.32890 -25.90375 -25.44591 -23.13966 -22.27799 -21.86043 -19.59107 -19.35654 -18.28156 -17.07216 -16.50770 -16.18590 -15.81747 -15.59991 -14.93589 -14.80698 -14.59028 -14.05451 -13.69947 -13.41249 -13.19244 -12.99611 -12.88914 -12.69899 -12.37147 -11.90874 -11.77564 -11.54122 -11.35584 -11.24525 -11.18813 -10.91328 -10.76420 -10.66735 -10.33096 -10.21606 -9.99403 -9.59542 -9.52076 -9.07748 -8.39801 -8.20348 -7.98309 -7.38301 -6.02262 -4.14848 1.40622 1.51247 3.18033 3.25347 3.34044 3.37407 3.59563 3.81960 4.38451 4.74187 4.87712 4.96877 5.02119 5.06553 5.11933 5.24659 5.29336 5.37657 5.40453 5.50064 5.60324 5.75141 5.92728 5.98163 6.12554 6.32351 6.36540 6.38315 6.43964 6.47368 6.48496 6.64203 6.67516 6.73217 7.07154 7.13393 7.32298 7.39333 7.53393 7.69064 7.75575 8.03700 8.10604 8.26930 8.57681 8.96249 9.53171 10.98318 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.004556 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.715493 B = 6144.705447 C = 6780.682726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.213 3.787 4 H 0.034 0.966 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.678 5.678 14 C 0.059 3.941 15 H 0.063 0.937 16 C 0.072 3.928 17 O -0.313 6.313 18 C 0.175 3.825 19 C -0.189 4.189 20 C -0.055 4.055 21 C -0.248 4.248 22 C 0.159 3.841 23 O -0.311 6.311 24 C 0.029 3.971 25 C -0.183 4.183 26 C -0.068 4.068 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.091 0.909 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.335 0.665 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 13.099 10.905 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.105 3.895 4 H 0.052 0.948 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.310 5.310 14 C -0.052 4.052 15 H 0.081 0.919 16 C -0.003 4.003 17 O -0.225 6.225 18 C 0.129 3.871 19 C -0.208 4.208 20 C -0.073 4.073 21 C -0.267 4.267 22 C 0.113 3.887 23 O -0.224 6.224 24 C -0.066 4.066 25 C -0.185 4.185 26 C -0.105 4.105 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.727 12.748 10.455 17.454 hybrid contribution 2.214 0.326 0.052 2.238 sum -3.514 13.075 10.507 17.137 Atomic orbital electron populations 1.21706 0.98970 0.98436 1.00329 1.21501 0.92076 0.99089 1.01837 1.19245 0.92877 0.91194 0.86151 0.94819 1.21875 0.92602 1.37987 1.06019 0.92796 1.24912 0.97983 0.94920 0.95594 1.69876 1.34839 1.37974 1.09534 0.86611 0.86106 0.77734 0.77985 1.19931 1.20927 1.21012 1.60869 1.56702 1.03525 1.09862 1.21919 0.96323 0.91294 0.95685 0.91926 1.23105 0.97941 0.76357 1.02901 1.86023 1.79723 1.19051 1.37719 1.18482 0.91309 0.90317 0.87006 1.20484 1.07112 0.90897 1.02305 1.20589 0.95191 0.98980 0.92522 1.21006 1.08549 0.94231 1.02951 1.18608 0.91064 0.91619 0.87393 1.86088 1.66480 1.36947 1.32922 1.23036 0.99573 0.93223 0.90812 1.19168 1.05891 0.96841 0.96584 1.20487 1.02482 0.89415 0.98142 0.93463 0.94433 0.95581 0.89078 0.94992 0.92894 0.84803 0.91662 0.87203 0.85276 0.85489 0.85678 0.88362 0.92733 0.92758 0.90248 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.73 37.16 0.36 -2.36 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.62 16 3 C 0.21 5.10 1.81 -68.86 -0.12 4.97 16 4 H 0.03 0.89 7.18 -51.93 -0.37 0.52 16 5 C -0.55 -14.49 8.24 -34.44 -0.28 -14.78 16 6 H 0.05 1.44 7.75 -52.48 -0.41 1.03 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.72 11.30 55.43 0.63 -24.09 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -13.67 5.57 -100.65 -0.56 -14.23 16 14 C 0.06 1.11 2.52 -67.43 -0.17 0.94 16 15 H 0.06 1.39 7.63 -51.93 -0.40 0.99 16 16 C 0.07 1.26 6.54 37.37 0.24 1.51 16 17 O -0.31 -5.50 10.27 -19.29 -0.20 -5.70 16 18 C 0.18 2.87 6.47 -39.21 -0.25 2.62 16 19 C -0.19 -2.61 9.93 -39.31 -0.39 -3.00 16 20 C -0.05 -0.64 10.03 -39.68 -0.40 -1.04 16 21 C -0.25 -3.03 9.03 -39.45 -0.36 -3.38 16 22 C 0.16 2.31 6.65 -39.16 -0.26 2.05 16 23 O -0.31 -4.23 9.64 -19.41 -0.19 -4.42 16 24 C 0.03 0.25 9.81 101.05 0.99 1.24 16 25 C -0.18 -2.99 5.76 -104.30 -0.60 -3.59 16 26 C -0.07 -1.14 4.76 -27.78 -0.13 -1.28 16 27 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 33 H 0.33 6.71 8.09 -39.29 -0.32 6.39 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 1.99 7.47 -51.93 -0.39 1.60 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.18 6.28 -52.49 -0.33 0.85 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 41 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 42 H 0.08 1.38 7.84 -51.93 -0.41 0.97 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -28.64 344.32 -8.41 -37.05 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.65 Total: 7.01 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.61 Total: -16.95 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.07 Total: -38.32 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.39 Total: -10.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.64 -8.41 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173149629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.908 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds