Wall clock time and date at job start Tue Mar 31 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 H 1.08995 * 109.47083 * 304.04793 * 3 2 1 5 5 C 1.50705 * 109.46735 * 184.05100 * 3 2 1 6 6 H 1.08008 * 119.99346 * 239.99789 * 5 3 2 7 7 C 1.37869 * 120.00371 * 59.99812 * 5 3 2 8 8 N 1.31515 * 120.00172 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46957 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46822 * 120.00368 * 9 7 5 12 12 H 1.48499 * 109.47325 * 240.00328 * 9 7 5 13 13 N 1.46898 * 109.47093 * 64.05068 * 3 2 1 14 14 C 1.46902 * 110.99806 * 204.23915 * 13 3 2 15 15 H 1.09004 * 109.73054 * 325.16034 * 14 13 3 16 16 C 1.53409 * 109.70027 * 85.74441 * 14 13 3 17 17 O 1.42826 * 108.40744 * 184.39541 * 16 14 13 18 18 C 1.35856 * 117.87382 * 310.80618 * 17 16 14 19 19 C 1.39195 * 118.47586 * 197.18174 * 18 17 16 20 20 C 1.37998 * 120.33282 * 180.15520 * 19 18 17 21 21 C 1.38203 * 120.01882 * 0.04866 * 20 19 18 22 22 C 1.38619 * 119.91736 * 359.91967 * 21 20 19 23 23 O 1.35895 * 119.90158 * 179.97438 * 22 21 20 24 24 C 1.42904 * 116.99788 * 359.97438 * 23 22 21 25 25 C 1.38274 * 121.79296 * 17.24150 * 18 17 16 26 26 C 1.50762 * 121.43385 * 359.47910 * 25 18 17 27 27 H 1.09003 * 109.47228 * 294.91341 * 1 2 3 28 28 H 1.08999 * 109.47092 * 54.91292 * 1 2 3 29 29 H 1.08999 * 109.46942 * 174.91433 * 1 2 3 30 30 H 1.08996 * 109.46993 * 240.00274 * 2 1 3 31 31 H 1.09002 * 109.47132 * 120.00092 * 2 1 3 32 32 H 0.96996 * 120.00397 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00199 * 80.28410 * 13 3 2 34 34 H 1.09006 * 109.68179 * 64.66224 * 16 14 13 35 35 H 1.08995 * 109.68410 * 304.14140 * 16 14 13 36 36 H 1.07999 * 119.84174 * 0.18001 * 19 18 17 37 37 H 1.07993 * 119.99542 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.04452 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.46530 * 180.02562 * 24 23 22 40 40 H 1.08996 * 109.46721 * 299.99784 * 24 23 22 41 41 H 1.08992 * 109.47025 * 60.00382 * 24 23 22 42 42 H 1.09001 * 109.43016 * 137.90193 * 26 25 18 43 43 H 1.08991 * 109.43710 * 257.81903 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6186 1.9768 -0.8515 5 6 3.5437 1.4437 -0.1004 6 1 4.1367 1.8926 0.6827 7 6 4.1622 0.8717 -1.1917 8 7 3.4400 0.3255 -2.1455 9 14 6.0261 0.8738 -1.3164 10 1 6.6012 1.5454 -0.1234 11 1 6.5193 -0.5254 -1.3822 12 1 6.4394 1.6025 -2.5426 13 7 1.6318 2.1062 1.2453 14 6 1.5731 3.5636 1.0704 15 1 2.3580 3.8838 0.3851 16 6 0.2022 3.9623 0.5091 17 8 0.2108 5.3675 0.2536 18 6 0.6551 6.1897 1.2396 19 6 0.3417 7.5439 1.1660 20 6 0.7761 8.4140 2.1451 21 6 1.5272 7.9427 3.2052 22 6 1.8419 6.5950 3.2844 23 8 2.5809 6.1320 4.3267 24 6 2.9988 7.0896 5.3016 25 6 1.4039 5.7158 2.3011 26 6 1.7567 4.2552 2.4244 27 1 -0.3634 0.4329 0.9321 28 1 -0.3633 0.5907 -0.8409 29 1 -0.3633 -1.0236 -0.0911 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8751 -0.0766 -2.9135 33 1 2.2466 1.8577 2.0058 34 1 -0.5749 3.7262 1.2362 35 1 0.0138 3.4216 -0.4183 36 1 -0.2447 7.9156 0.3388 37 1 0.5295 9.4635 2.0828 38 1 1.8677 8.6233 3.9715 39 1 3.5795 6.5893 6.0766 40 1 3.6135 7.8515 4.8223 41 1 2.1225 7.5584 5.7493 42 1 2.7946 4.1585 2.7432 43 1 1.1055 3.7858 3.1616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173149629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:54 Heat of formation + Delta-G solvation = -76.351798 kcal Electronic energy + Delta-G solvation = -23822.089006 eV Core-core repulsion = 20445.622183 eV Total energy + Delta-G solvation = -3376.466823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89981 -40.16088 -38.28948 -37.32927 -35.40150 -33.71404 -32.46208 -30.87645 -29.94723 -28.17502 -27.75608 -26.75417 -24.84491 -23.64733 -22.97671 -21.41501 -20.76463 -19.37928 -18.73777 -18.05355 -17.32787 -16.98739 -16.70366 -16.51314 -16.09350 -15.98046 -15.46953 -15.31589 -14.87611 -14.71257 -14.39474 -14.19767 -13.91610 -13.58414 -13.28320 -13.25746 -13.08119 -12.90547 -12.68107 -12.59865 -12.54233 -12.28425 -12.11401 -11.81708 -11.60043 -11.55932 -11.38811 -11.33894 -10.96404 -10.47553 -9.36584 -9.19352 -9.02194 -8.08946 -6.29861 0.34175 0.44775 1.34110 1.37049 1.46644 2.20647 2.37581 2.44033 2.73831 3.11862 3.44865 3.66547 3.75453 4.02361 4.05849 4.15622 4.32082 4.35033 4.42623 4.48241 4.52204 4.56751 4.62366 4.67761 4.75429 4.76425 4.77896 4.95238 5.04913 5.07135 5.16053 5.30132 5.31373 5.43304 5.46451 5.50593 5.61168 5.68464 5.75944 6.08757 6.15525 6.27426 6.38241 6.51356 6.72316 6.95457 7.41271 8.88568 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.004556 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.715493 B = 6144.705447 C = 6780.682726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.222 3.778 4 H 0.003 0.997 5 C -0.560 4.560 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.283 1.283 13 N -0.663 5.663 14 C 0.064 3.936 15 H 0.022 0.978 16 C 0.081 3.919 17 O -0.327 6.327 18 C 0.145 3.855 19 C -0.197 4.197 20 C -0.043 4.043 21 C -0.240 4.240 22 C 0.150 3.850 23 O -0.334 6.334 24 C 0.018 3.982 25 C -0.211 4.211 26 C -0.054 4.054 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.336 0.664 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 15.128 12.695 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.599 4.599 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.202 1.202 12 H -0.209 1.209 13 N -0.294 5.294 14 C -0.047 4.047 15 H 0.040 0.960 16 C 0.006 3.994 17 O -0.240 6.240 18 C 0.100 3.900 19 C -0.216 4.216 20 C -0.060 4.060 21 C -0.259 4.259 22 C 0.104 3.896 23 O -0.248 6.248 24 C -0.076 4.076 25 C -0.213 4.213 26 C -0.091 4.091 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.177 0.823 39 H 0.133 0.867 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.835 14.790 12.267 20.081 hybrid contribution 2.274 -0.177 -0.422 2.320 sum -3.561 14.613 11.844 19.144 Atomic orbital electron populations 1.21568 0.96179 0.99709 1.00783 1.21353 0.94548 0.97957 1.00219 1.19002 0.91450 0.91651 0.86559 0.97910 1.22166 0.94101 1.37734 1.05918 0.93579 1.25607 1.01967 0.94777 0.95418 1.69995 1.36301 1.38515 1.09902 0.85685 0.81362 0.77885 0.77763 1.19788 1.20178 1.20866 1.60806 1.55999 1.04327 1.08256 1.21834 0.96098 0.90345 0.96386 0.95985 1.22908 0.97161 0.76931 1.02419 1.85979 1.80390 1.18724 1.38891 1.18850 0.92746 0.91244 0.87207 1.20797 1.07340 0.89985 1.03455 1.21079 0.93386 1.00532 0.91048 1.21427 1.07318 0.93568 1.03576 1.18751 0.91150 0.92349 0.87333 1.86060 1.66297 1.39074 1.33357 1.23375 1.00726 0.93191 0.90295 1.19217 1.07538 0.96570 0.98001 1.20278 1.01922 0.90430 0.96475 0.92189 0.94910 0.93687 0.92036 0.95126 0.92830 0.84663 0.90206 0.88523 0.84004 0.81425 0.82337 0.86717 0.91569 0.90986 0.91368 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 9.73 71.98 0.70 -4.23 16 2 C -0.10 -4.85 5.45 30.60 0.17 -4.69 16 3 C 0.22 11.04 1.81 44.17 0.08 11.12 16 4 H 0.00 0.17 7.18 -2.39 -0.02 0.15 16 5 C -0.56 -30.73 8.24 25.60 0.21 -30.52 16 6 H 0.05 2.54 7.75 -2.91 -0.02 2.52 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -52.14 11.30 21.44 0.24 -51.90 16 9 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 N -0.66 -27.58 5.57 -472.35 -2.63 -30.20 16 14 C 0.06 2.55 2.52 45.10 0.11 2.67 16 15 H 0.02 1.05 7.63 -2.38 -0.02 1.03 16 16 C 0.08 2.95 6.54 72.12 0.47 3.43 16 17 O -0.33 -11.84 10.27 -91.93 -0.94 -12.78 16 18 C 0.14 4.76 6.47 22.51 0.15 4.90 16 19 C -0.20 -5.11 9.93 22.44 0.22 -4.88 16 20 C -0.04 -0.85 10.03 22.20 0.22 -0.63 16 21 C -0.24 -5.03 9.03 22.35 0.20 -4.83 16 22 C 0.15 4.14 6.65 22.54 0.15 4.29 16 23 O -0.33 -8.59 9.64 -92.37 -0.89 -9.48 16 24 C 0.02 0.27 9.81 113.37 1.11 1.38 16 25 C -0.21 -6.91 5.76 -19.66 -0.11 -7.02 16 26 C -0.05 -1.85 4.76 29.92 0.14 -1.71 16 27 H 0.06 2.20 7.87 -2.39 -0.02 2.18 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.06 3.31 5.97 -2.39 -0.01 3.30 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.34 13.81 8.09 -89.70 -0.73 13.08 16 34 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.10 3.71 7.47 -2.39 -0.02 3.69 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.16 2.21 6.28 -2.91 -0.02 2.19 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 0.81 7.66 -2.39 -0.02 0.80 16 41 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 42 H 0.07 2.45 7.84 -2.39 -0.02 2.43 16 43 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -63.90 344.32 2.36 -61.54 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.28 Total: 25.69 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 4.28 Total: -29.03 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.39 Total: -82.10 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.83 Total: -22.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.90 2.36 -61.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173149629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.807 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds