Wall clock time and date at job start Tue Mar 31 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47034 * 2 1 4 4 H 1.08999 * 109.47217 * 179.64376 * 3 2 1 5 5 C 1.50702 * 109.47180 * 299.64200 * 3 2 1 6 6 H 1.07999 * 120.00365 * 120.00347 * 5 3 2 7 7 C 1.37879 * 119.99797 * 300.00140 * 5 3 2 8 8 N 1.31518 * 120.00057 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47249 * 89.99953 * 9 7 5 11 11 H 1.48500 * 109.47084 * 209.99855 * 9 7 5 12 12 H 1.48498 * 109.47002 * 329.99800 * 9 7 5 13 13 N 1.46896 * 109.47323 * 59.63826 * 3 2 1 14 14 C 1.46906 * 110.99799 * 85.95733 * 13 3 2 15 15 H 1.08996 * 109.72716 * 327.27398 * 14 13 3 16 16 C 1.53413 * 109.69843 * 87.85542 * 14 13 3 17 17 O 1.42826 * 108.36932 * 184.40677 * 16 14 13 18 18 C 1.35851 * 117.86374 * 310.83327 * 17 16 14 19 19 C 1.39206 * 118.47032 * 197.02277 * 18 17 16 20 20 C 1.37996 * 120.33263 * 180.23275 * 19 18 17 21 21 C 1.38197 * 120.01797 * 0.03874 * 20 19 18 22 22 C 1.38618 * 119.92021 * 359.60587 * 21 20 19 23 23 O 1.35898 * 119.89653 * 180.28747 * 22 21 20 24 24 C 1.42894 * 117.00233 * 0.29365 * 23 22 21 25 25 C 1.38269 * 121.80373 * 17.12418 * 18 17 16 26 26 C 1.50767 * 121.43629 * 359.67202 * 25 18 17 27 27 H 1.09003 * 109.47090 * 296.37137 * 1 2 3 28 28 H 1.08998 * 109.47101 * 56.37248 * 1 2 3 29 29 H 1.08997 * 109.47197 * 176.37264 * 1 2 3 30 30 H 1.08992 * 109.46961 * 239.99820 * 2 1 3 31 31 H 1.09000 * 109.46731 * 120.00102 * 2 1 3 32 32 H 0.97004 * 119.99644 * 180.02562 * 8 7 5 33 33 H 1.00901 * 111.00457 * 209.91213 * 13 3 2 34 34 H 1.09001 * 109.68517 * 304.12501 * 16 14 13 35 35 H 1.09003 * 109.68691 * 64.65110 * 16 14 13 36 36 H 1.08002 * 119.83120 * 0.25655 * 19 18 17 37 37 H 1.08003 * 119.99094 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.03815 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47325 * 60.00304 * 24 23 22 40 40 H 1.09000 * 109.46916 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47060 * 300.00036 * 24 23 22 42 42 H 1.09000 * 109.43367 * 137.75859 * 26 25 18 43 43 H 1.08997 * 109.43407 * 257.67342 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0064 5 6 1.5449 2.1503 -1.2349 6 1 0.9235 3.0286 -1.1414 7 6 1.8854 1.6766 -2.4842 8 7 2.6418 0.6068 -2.5982 9 14 1.2723 2.5544 -4.0149 10 1 2.2533 3.5949 -4.4153 11 1 1.1136 1.5731 -5.1182 12 1 -0.0373 3.1930 -3.7283 13 7 1.5432 2.1375 1.1950 14 6 2.4324 1.9126 2.3426 15 1 2.8747 0.9186 2.2760 16 6 3.5415 2.9725 2.3529 17 8 4.4458 2.6674 3.4155 18 6 3.9211 2.4153 4.6430 19 6 4.7640 2.4724 5.7494 20 6 4.2727 2.2183 7.0136 21 6 2.9380 1.9045 7.1865 22 6 2.0920 1.8532 6.0895 23 8 0.7784 1.5503 6.2608 24 6 0.3385 1.3031 7.5976 25 6 2.5847 2.1049 4.8145 26 6 1.6366 2.0373 3.6442 27 1 -0.3633 0.4565 0.9207 28 1 -0.3633 0.5691 -0.8557 29 1 -0.3633 -1.0256 -0.0650 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.8816 0.2738 -3.4771 33 1 1.4251 3.1236 1.0169 34 1 4.0737 2.9563 1.4018 35 1 3.1055 3.9586 2.5129 36 1 5.8076 2.7172 5.6177 37 1 4.9314 2.2646 7.8682 38 1 2.5532 1.7052 8.1758 39 1 0.5169 2.1881 8.2084 40 1 -0.7270 1.0732 7.5929 41 1 0.8901 0.4589 8.0114 42 1 0.9847 1.1709 3.7551 43 1 1.0327 2.9442 3.6139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173152948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:57 Heat of formation + Delta-G solvation = -55.521653 kcal Electronic energy + Delta-G solvation = -23774.069143 eV Core-core repulsion = 20398.505583 eV Total energy + Delta-G solvation = -3375.563560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79593 -39.11672 -36.88420 -36.09258 -33.81747 -31.94413 -30.81522 -29.68463 -28.46680 -27.32157 -25.77750 -25.42207 -23.28834 -22.67012 -21.99253 -19.83561 -19.00701 -18.36443 -16.92609 -16.54033 -16.07724 -15.87993 -15.63431 -14.98453 -14.85323 -14.76403 -13.94699 -13.56562 -13.48445 -13.20700 -13.13620 -12.82141 -12.66656 -12.29351 -11.98381 -11.82735 -11.74251 -11.58504 -11.02028 -10.94246 -10.89007 -10.69108 -10.63804 -10.43708 -10.29051 -9.94700 -9.70252 -9.39121 -8.81341 -8.50784 -8.23511 -8.03424 -7.31534 -6.04495 -4.10715 1.36893 1.46917 3.15410 3.27678 3.35310 3.38308 3.51178 3.77656 4.37612 4.70886 4.83392 4.95040 5.00831 5.05375 5.15953 5.18210 5.26805 5.28502 5.34628 5.42178 5.54327 5.64943 5.79187 5.90126 6.00058 6.29506 6.32765 6.41146 6.45711 6.53757 6.56055 6.68115 6.68900 6.85638 7.23874 7.25043 7.32653 7.46263 7.60118 7.71949 7.76313 7.81409 8.21912 8.33032 8.59090 8.97776 9.54487 11.01214 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.003903 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.994997 B = 7171.868035 C = 7831.202113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.215 3.785 4 H 0.003 0.997 5 C -0.515 4.515 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.670 5.670 14 C 0.058 3.942 15 H 0.084 0.916 16 C 0.032 3.968 17 O -0.312 6.312 18 C 0.171 3.829 19 C -0.189 4.189 20 C -0.055 4.055 21 C -0.247 4.247 22 C 0.159 3.841 23 O -0.310 6.310 24 C 0.029 3.971 25 C -0.184 4.184 26 C -0.054 4.054 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.013 0.987 30 H 0.087 0.913 31 H 0.009 0.991 32 H 0.261 0.739 33 H 0.333 0.667 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 2.621 18.801 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.301 5.301 14 C -0.054 4.054 15 H 0.102 0.898 16 C -0.045 4.045 17 O -0.224 6.224 18 C 0.125 3.875 19 C -0.207 4.207 20 C -0.074 4.074 21 C -0.266 4.266 22 C 0.113 3.887 23 O -0.222 6.222 24 C -0.067 4.067 25 C -0.186 4.186 26 C -0.092 4.092 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.105 0.895 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.183 1.972 18.599 18.704 hybrid contribution 0.344 0.916 -0.853 1.298 sum 0.161 2.887 17.745 17.979 Atomic orbital electron populations 1.21447 0.97458 0.97420 1.01380 1.21446 0.95100 0.98161 0.99501 1.19192 0.93032 0.91564 0.85439 0.97952 1.21166 1.31893 1.12070 0.90278 0.92231 1.24880 0.94985 0.94940 0.98933 1.69886 1.36437 1.22546 1.23671 0.86578 0.79235 0.79333 0.82751 1.20806 1.21239 1.19846 1.60733 1.47513 1.16009 1.05876 1.22184 0.91713 0.98641 0.92844 0.89777 1.24034 0.92654 0.98960 0.88820 1.86003 1.36496 1.84019 1.15909 1.18486 0.90615 0.93098 0.85321 1.20484 1.00310 1.09551 0.90400 1.20589 0.94473 0.96047 0.96245 1.21025 0.95025 1.12702 0.97863 1.18611 0.82949 0.94167 0.92925 1.86104 1.22489 1.84018 1.29628 1.23040 1.00879 1.00515 0.82235 1.19287 0.94465 1.10832 0.94046 1.20289 0.95960 1.03424 0.89494 0.93871 0.92539 0.96788 0.89451 0.97178 0.92897 0.84907 0.87107 0.91961 0.85339 0.85480 0.85642 0.92790 0.88314 0.92742 0.89664 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.33 16 2 C -0.10 -2.50 5.57 -26.73 -0.15 -2.64 16 3 C 0.21 5.15 2.12 -68.87 -0.15 5.01 16 4 H 0.00 0.07 7.35 -51.93 -0.38 -0.31 16 5 C -0.52 -13.38 7.28 -34.44 -0.25 -13.63 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.67 11.32 55.43 0.63 -24.05 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.67 -13.47 5.37 -100.69 -0.54 -14.01 16 14 C 0.06 1.04 2.48 -67.46 -0.17 0.87 16 15 H 0.08 1.69 7.21 -51.93 -0.37 1.32 16 16 C 0.03 0.53 6.28 37.37 0.23 0.77 16 17 O -0.31 -5.29 10.27 -19.27 -0.20 -5.49 16 18 C 0.17 2.70 6.47 -39.21 -0.25 2.45 16 19 C -0.19 -2.51 9.93 -39.31 -0.39 -2.90 16 20 C -0.06 -0.63 10.03 -39.69 -0.40 -1.02 16 21 C -0.25 -2.89 9.03 -39.46 -0.36 -3.25 16 22 C 0.16 2.23 6.65 -39.16 -0.26 1.97 16 23 O -0.31 -4.08 9.65 -19.42 -0.19 -4.27 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.18 -2.90 5.76 -104.30 -0.60 -3.50 16 26 C -0.05 -0.89 5.08 -27.81 -0.14 -1.03 16 27 H 0.04 0.92 7.71 -51.93 -0.40 0.52 16 28 H 0.06 1.35 7.10 -51.93 -0.37 0.98 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 31 H 0.01 0.22 7.54 -51.93 -0.39 -0.17 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.33 6.47 7.92 -39.29 -0.31 6.15 16 34 H 0.11 1.94 7.67 -51.93 -0.40 1.54 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.13 6.28 -52.48 -0.33 0.80 16 39 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.40 7.64 -51.93 -0.40 0.00 16 42 H 0.08 1.47 7.85 -51.93 -0.41 1.07 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -28.50 341.39 -8.35 -36.84 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.54 Total: 6.43 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.63 Total: -16.37 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.09 Total: -38.05 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.39 Total: -9.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.50 -8.35 -36.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173152948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.677 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds