Wall clock time and date at job start Tue Mar 31 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47034 * 2 1 4 4 H 1.08999 * 109.47217 * 179.64376 * 3 2 1 5 5 C 1.50702 * 109.47180 * 299.64200 * 3 2 1 6 6 H 1.07999 * 120.00365 * 120.00347 * 5 3 2 7 7 C 1.37879 * 119.99797 * 300.00140 * 5 3 2 8 8 N 1.31518 * 120.00057 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47249 * 89.99953 * 9 7 5 11 11 H 1.48500 * 109.47084 * 209.99855 * 9 7 5 12 12 H 1.48498 * 109.47002 * 329.99800 * 9 7 5 13 13 N 1.46896 * 109.47323 * 59.63826 * 3 2 1 14 14 C 1.46906 * 110.99799 * 85.95733 * 13 3 2 15 15 H 1.08996 * 109.72716 * 327.27398 * 14 13 3 16 16 C 1.53413 * 109.69843 * 87.85542 * 14 13 3 17 17 O 1.42826 * 108.36932 * 184.40677 * 16 14 13 18 18 C 1.35851 * 117.86374 * 310.83327 * 17 16 14 19 19 C 1.39206 * 118.47032 * 197.02277 * 18 17 16 20 20 C 1.37996 * 120.33263 * 180.23275 * 19 18 17 21 21 C 1.38197 * 120.01797 * 0.03874 * 20 19 18 22 22 C 1.38618 * 119.92021 * 359.60587 * 21 20 19 23 23 O 1.35898 * 119.89653 * 180.28747 * 22 21 20 24 24 C 1.42894 * 117.00233 * 0.29365 * 23 22 21 25 25 C 1.38269 * 121.80373 * 17.12418 * 18 17 16 26 26 C 1.50767 * 121.43629 * 359.67202 * 25 18 17 27 27 H 1.09003 * 109.47090 * 296.37137 * 1 2 3 28 28 H 1.08998 * 109.47101 * 56.37248 * 1 2 3 29 29 H 1.08997 * 109.47197 * 176.37264 * 1 2 3 30 30 H 1.08992 * 109.46961 * 239.99820 * 2 1 3 31 31 H 1.09000 * 109.46731 * 120.00102 * 2 1 3 32 32 H 0.97004 * 119.99644 * 180.02562 * 8 7 5 33 33 H 1.00901 * 111.00457 * 209.91213 * 13 3 2 34 34 H 1.09001 * 109.68517 * 304.12501 * 16 14 13 35 35 H 1.09003 * 109.68691 * 64.65110 * 16 14 13 36 36 H 1.08002 * 119.83120 * 0.25655 * 19 18 17 37 37 H 1.08003 * 119.99094 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.03815 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47325 * 60.00304 * 24 23 22 40 40 H 1.09000 * 109.46916 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.47060 * 300.00036 * 24 23 22 42 42 H 1.09000 * 109.43367 * 137.75859 * 26 25 18 43 43 H 1.08997 * 109.43407 * 257.67342 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0064 5 6 1.5449 2.1503 -1.2349 6 1 0.9235 3.0286 -1.1414 7 6 1.8854 1.6766 -2.4842 8 7 2.6418 0.6068 -2.5982 9 14 1.2723 2.5544 -4.0149 10 1 2.2533 3.5949 -4.4153 11 1 1.1136 1.5731 -5.1182 12 1 -0.0373 3.1930 -3.7283 13 7 1.5432 2.1375 1.1950 14 6 2.4324 1.9126 2.3426 15 1 2.8747 0.9186 2.2760 16 6 3.5415 2.9725 2.3529 17 8 4.4458 2.6674 3.4155 18 6 3.9211 2.4153 4.6430 19 6 4.7640 2.4724 5.7494 20 6 4.2727 2.2183 7.0136 21 6 2.9380 1.9045 7.1865 22 6 2.0920 1.8532 6.0895 23 8 0.7784 1.5503 6.2608 24 6 0.3385 1.3031 7.5976 25 6 2.5847 2.1049 4.8145 26 6 1.6366 2.0373 3.6442 27 1 -0.3633 0.4565 0.9207 28 1 -0.3633 0.5691 -0.8557 29 1 -0.3633 -1.0256 -0.0650 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.8816 0.2738 -3.4771 33 1 1.4251 3.1236 1.0169 34 1 4.0737 2.9563 1.4018 35 1 3.1055 3.9586 2.5129 36 1 5.8076 2.7172 5.6177 37 1 4.9314 2.2646 7.8682 38 1 2.5532 1.7052 8.1758 39 1 0.5169 2.1881 8.2084 40 1 -0.7270 1.0732 7.5929 41 1 0.8901 0.4589 8.0114 42 1 0.9847 1.1709 3.7551 43 1 1.0327 2.9442 3.6139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173152948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:57 Heat of formation + Delta-G solvation = -72.611677 kcal Electronic energy + Delta-G solvation = -23774.810222 eV Core-core repulsion = 20398.505583 eV Total energy + Delta-G solvation = -3376.304639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92558 -40.18761 -38.36696 -37.33447 -35.44970 -33.57973 -32.43486 -30.78928 -29.88931 -28.14175 -27.61596 -26.68402 -25.17061 -23.98359 -23.01550 -21.30221 -20.76290 -19.38758 -18.39032 -18.02557 -17.31281 -16.93837 -16.79714 -16.57388 -16.14768 -15.91956 -15.60020 -15.11891 -14.86239 -14.71409 -14.28006 -14.23264 -13.95955 -13.75284 -13.52212 -13.22151 -12.84496 -12.80676 -12.63598 -12.55067 -12.40831 -12.21051 -11.98359 -11.94797 -11.74910 -11.55188 -11.38998 -11.31015 -10.80585 -10.53469 -9.36985 -9.09531 -8.97452 -8.09184 -6.21693 0.34403 0.44661 1.42839 1.45082 1.54372 2.17569 2.41631 2.45421 2.74145 3.19968 3.41516 3.68859 3.77808 3.92266 4.01716 4.09217 4.28075 4.32005 4.44557 4.45361 4.50295 4.55398 4.61429 4.67045 4.70633 4.78004 4.78468 4.93331 5.01844 5.16863 5.29804 5.30536 5.32296 5.40000 5.46913 5.54728 5.67553 5.71936 5.79536 5.86914 6.26308 6.29894 6.45232 6.51655 6.74528 7.01085 7.47296 8.96031 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.003903 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.994997 B = 7171.868035 C = 7831.202113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C 0.224 3.776 4 H -0.031 1.031 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.663 5.663 14 C 0.064 3.936 15 H 0.057 0.943 16 C 0.041 3.959 17 O -0.326 6.326 18 C 0.142 3.858 19 C -0.197 4.197 20 C -0.044 4.044 21 C -0.239 4.239 22 C 0.151 3.849 23 O -0.332 6.332 24 C 0.018 3.982 25 C -0.210 4.210 26 C -0.039 4.039 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.338 0.662 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 3.357 21.251 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.115 3.885 4 H -0.013 1.013 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.295 5.295 14 C -0.047 4.047 15 H 0.075 0.925 16 C -0.036 4.036 17 O -0.239 6.239 18 C 0.097 3.903 19 C -0.216 4.216 20 C -0.061 4.061 21 C -0.258 4.258 22 C 0.105 3.895 23 O -0.246 6.246 24 C -0.076 4.076 25 C -0.212 4.212 26 C -0.077 4.077 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.158 0.842 37 H 0.185 0.815 38 H 0.177 0.823 39 H 0.089 0.911 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.804 2.716 21.079 21.269 hybrid contribution 0.542 0.648 -1.435 1.665 sum -0.262 3.364 19.644 19.932 Atomic orbital electron populations 1.21302 0.95798 0.98342 1.00972 1.21342 0.96463 0.97932 0.98205 1.18936 0.90981 0.91952 0.86593 1.01316 1.21432 1.31550 1.12080 0.91088 0.92050 1.25618 0.95180 0.95565 1.01753 1.70028 1.37576 1.23869 1.24128 0.85606 0.78905 0.78201 0.79219 1.20353 1.21311 1.19142 1.60643 1.47812 1.16062 1.04970 1.22068 0.92123 0.97714 0.92840 0.92470 1.23797 0.92022 0.99076 0.88674 1.85965 1.36627 1.84701 1.16579 1.18834 0.91352 0.94858 0.85256 1.20788 1.00713 1.09541 0.90542 1.21068 0.94883 0.93705 0.96479 1.21434 0.94857 1.10892 0.98579 1.18755 0.83835 0.94075 0.92863 1.86075 1.22079 1.83902 1.32539 1.23374 1.01992 1.01790 0.80442 1.19289 0.94421 1.12888 0.94602 1.20055 0.95749 1.02887 0.88999 0.92941 0.94235 0.95035 0.92251 0.96899 0.93040 0.84368 0.88642 0.90421 0.84179 0.81519 0.82347 0.91139 0.86736 0.91449 0.90907 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.52 71.98 0.69 -4.10 16 2 C -0.10 -5.00 5.57 30.59 0.17 -4.83 16 3 C 0.22 11.11 2.12 44.17 0.09 11.20 16 4 H -0.03 -1.71 7.35 -2.39 -0.02 -1.73 16 5 C -0.52 -27.60 7.28 25.60 0.19 -27.41 16 6 H 0.06 3.16 7.60 -2.91 -0.02 3.14 16 7 C 0.02 0.98 5.30 84.65 0.45 1.43 16 8 N -0.92 -52.35 11.32 21.45 0.24 -52.11 16 9 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 13 N -0.66 -27.37 5.37 -472.48 -2.54 -29.91 16 14 C 0.06 2.39 2.48 45.08 0.11 2.50 16 15 H 0.06 2.44 7.21 -2.39 -0.02 2.42 16 16 C 0.04 1.42 6.28 72.12 0.45 1.88 16 17 O -0.33 -11.35 10.27 -91.87 -0.94 -12.29 16 18 C 0.14 4.47 6.47 22.51 0.15 4.62 16 19 C -0.20 -4.91 9.93 22.45 0.22 -4.69 16 20 C -0.04 -0.83 10.03 22.20 0.22 -0.61 16 21 C -0.24 -4.76 9.03 22.35 0.20 -4.56 16 22 C 0.15 3.98 6.65 22.54 0.15 4.13 16 23 O -0.33 -8.22 9.65 -92.41 -0.89 -9.11 16 24 C 0.02 0.25 9.81 113.37 1.11 1.36 16 25 C -0.21 -6.56 5.76 -19.66 -0.11 -6.67 16 26 C -0.04 -1.31 5.08 29.89 0.15 -1.16 16 27 H 0.05 2.22 7.71 -2.39 -0.02 2.20 16 28 H 0.04 1.88 7.10 -2.39 -0.02 1.86 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 3.30 6.06 -2.39 -0.01 3.28 16 31 H 0.01 0.60 7.54 -2.39 -0.02 0.58 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.34 13.32 7.92 -89.69 -0.71 12.61 16 34 H 0.10 3.56 7.67 -2.39 -0.02 3.54 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.16 2.06 6.28 -2.91 -0.02 2.04 16 39 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 0.76 7.64 -2.39 -0.02 0.74 16 42 H 0.07 2.57 7.85 -2.39 -0.02 2.55 16 43 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -62.88 341.39 2.44 -60.44 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.30 Total: 24.92 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 4.24 Total: -26.91 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -2.29 Total: -82.02 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.83 Total: -21.40 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -62.88 2.44 -60.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173152948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.169 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds