Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 H 1.09007 * 109.46963 * 54.99201 * 3 2 1 5 5 C 1.50696 * 109.47341 * 174.99204 * 3 2 1 6 6 H 1.07997 * 120.00081 * 119.99880 * 5 3 2 7 7 C 1.37882 * 120.00221 * 300.00430 * 5 3 2 8 8 N 1.31518 * 119.99756 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00094 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47390 * 59.99541 * 9 7 5 11 11 H 1.48497 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46865 * 299.99390 * 9 7 5 13 13 N 1.46900 * 109.47234 * 294.99585 * 3 2 1 14 14 C 1.46894 * 111.00226 * 156.22146 * 13 3 2 15 15 H 1.09008 * 109.69492 * 33.99985 * 14 13 3 16 16 C 1.53404 * 109.70184 * 273.40126 * 14 13 3 17 17 O 1.42823 * 108.37699 * 175.61286 * 16 14 13 18 18 C 1.35859 * 117.86490 * 49.19392 * 17 16 14 19 19 C 1.39194 * 118.47494 * 162.90667 * 18 17 16 20 20 C 1.37996 * 120.33195 * 179.67203 * 19 18 17 21 21 C 1.38204 * 120.01698 * 359.83045 * 20 19 18 22 22 C 1.38614 * 119.91936 * 0.53770 * 21 20 19 23 23 O 1.35894 * 119.89893 * 179.72786 * 22 21 20 24 24 C 1.42894 * 116.99928 * 359.72577 * 23 22 21 25 25 C 1.38269 * 121.79148 * 342.76336 * 18 17 16 26 26 C 1.50760 * 121.44165 * 0.47758 * 25 18 17 27 27 H 1.09000 * 109.46784 * 295.41665 * 1 2 3 28 28 H 1.08997 * 109.46588 * 55.41919 * 1 2 3 29 29 H 1.08998 * 109.47181 * 175.41244 * 1 2 3 30 30 H 1.09001 * 109.47239 * 240.00175 * 2 1 3 31 31 H 1.09003 * 109.47146 * 120.00256 * 2 1 3 32 32 H 0.96997 * 119.99725 * 180.02562 * 8 7 5 33 33 H 1.00895 * 110.99482 * 280.17777 * 13 3 2 34 34 H 1.09001 * 109.68179 * 295.33469 * 16 14 13 35 35 H 1.09002 * 109.68349 * 55.85408 * 16 14 13 36 36 H 1.08001 * 119.83425 * 359.69751 * 19 18 17 37 37 H 1.07999 * 119.99259 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.04150 * 180.32849 * 21 20 19 39 39 H 1.09003 * 109.47185 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.47459 * 60.00173 * 24 23 22 41 41 H 1.09000 * 109.47364 * 299.99777 * 24 23 22 42 42 H 1.09006 * 109.43310 * 102.27374 * 26 25 18 43 43 H 1.08995 * 109.44049 * 222.14535 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4442 0.1240 6 1 4.1473 1.8887 -0.6520 7 6 4.1432 0.8783 1.2282 8 7 3.4060 0.3374 2.1735 9 14 6.0048 0.8812 1.3823 10 1 6.4994 2.2813 1.3826 11 1 6.3975 0.2177 2.6514 12 1 6.5975 0.1471 0.2355 13 7 1.6516 2.0992 -1.2553 14 6 1.6010 3.5582 -1.0923 15 1 2.3704 3.8762 -0.3886 16 6 0.2191 3.9728 -0.5710 17 8 0.2338 5.3797 -0.3258 18 6 0.7119 6.1902 -1.3057 19 6 0.4108 7.5480 -1.2498 20 6 0.8822 8.4070 -2.2214 21 6 1.6605 7.9213 -3.2551 22 6 1.9574 6.5689 -3.3205 23 8 2.7181 6.0910 -4.3401 24 6 3.1714 7.0373 -5.3101 25 6 1.4842 5.7012 -2.3432 26 6 1.8274 4.2368 -2.4456 27 1 -0.3633 0.4411 0.9282 28 1 -0.3632 0.5833 -0.8461 29 1 -0.3633 -1.0244 -0.0822 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8289 -0.0604 2.9505 33 1 2.2738 1.8406 -2.0062 34 1 -0.5402 3.7381 -1.3170 35 1 0.0011 3.4404 0.3548 36 1 -0.1945 7.9312 -0.4416 37 1 0.6456 9.4596 -2.1724 38 1 2.0341 8.5941 -4.0128 39 1 3.7658 6.5254 -6.0670 40 1 3.7817 7.7959 -4.8202 41 1 2.3121 7.5123 -5.7836 42 1 1.1929 3.7673 -3.1974 43 1 2.8726 4.1285 -2.7353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173152951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -75.989331 kcal Electronic energy + Delta-G solvation = -23823.935367 eV Core-core repulsion = 20447.484262 eV Total energy + Delta-G solvation = -3376.451105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90150 -40.16183 -38.29186 -37.33060 -35.40289 -33.71140 -32.45991 -30.87652 -29.94613 -28.17510 -27.75197 -26.75407 -24.84276 -23.64489 -22.97687 -21.41741 -20.76304 -19.38027 -18.72720 -18.05452 -17.32946 -16.98794 -16.70462 -16.51407 -16.08997 -15.98140 -15.46999 -15.31971 -14.87336 -14.69973 -14.39360 -14.20173 -13.91170 -13.57948 -13.28748 -13.26211 -13.06740 -12.90984 -12.67182 -12.59324 -12.55311 -12.29952 -12.10814 -11.80782 -11.59890 -11.55955 -11.39524 -11.33939 -10.97004 -10.46471 -9.36677 -9.19505 -9.02214 -8.08455 -6.29507 0.34144 0.44759 1.36506 1.37054 1.44526 2.20667 2.37855 2.44155 2.73670 3.12182 3.44962 3.66784 3.75401 4.02318 4.05930 4.15666 4.32047 4.35196 4.42537 4.48203 4.52142 4.56800 4.62130 4.68030 4.75690 4.76873 4.78348 4.95070 5.05061 5.07297 5.15772 5.30085 5.31338 5.43662 5.46409 5.50407 5.61075 5.68473 5.76435 6.08888 6.15905 6.27492 6.38211 6.51343 6.72425 6.95434 7.41414 8.88660 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.004575 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.779055 B = 6119.406776 C = 6770.332023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C 0.223 3.777 4 H 0.003 0.997 5 C -0.562 4.562 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.270 1.270 13 N -0.663 5.663 14 C 0.064 3.936 15 H 0.022 0.978 16 C 0.081 3.919 17 O -0.327 6.327 18 C 0.145 3.855 19 C -0.197 4.197 20 C -0.043 4.043 21 C -0.240 4.240 22 C 0.150 3.850 23 O -0.334 6.334 24 C 0.018 3.982 25 C -0.211 4.211 26 C -0.054 4.054 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.263 0.737 33 H 0.336 0.664 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 15.028 -12.880 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.021 0.979 5 C -0.601 4.601 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.772 3.228 10 H -0.206 1.206 11 H -0.206 1.206 12 H -0.195 1.195 13 N -0.294 5.294 14 C -0.047 4.047 15 H 0.040 0.960 16 C 0.006 3.994 17 O -0.240 6.240 18 C 0.100 3.900 19 C -0.216 4.216 20 C -0.061 4.061 21 C -0.259 4.259 22 C 0.104 3.896 23 O -0.248 6.248 24 C -0.076 4.076 25 C -0.213 4.213 26 C -0.091 4.091 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.177 0.823 39 H 0.133 0.867 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.460 14.692 -12.449 20.016 hybrid contribution 2.270 -0.170 0.443 2.319 sum -3.189 14.522 -12.007 19.110 Atomic orbital electron populations 1.21597 0.96234 1.00146 1.00553 1.21353 0.94550 0.97978 1.00203 1.18976 0.91526 0.91711 0.86385 0.97947 1.22112 0.94151 1.38195 1.05665 0.93564 1.25609 1.01900 0.94754 0.95475 1.69983 1.36370 1.38615 1.09683 0.85798 0.81350 0.77998 0.77607 1.20560 1.20626 1.19525 1.60797 1.55950 1.04188 1.08468 1.21823 0.96082 0.90339 0.96420 0.95957 1.22910 0.97073 0.76844 1.02597 1.85980 1.79140 1.19005 1.39860 1.18849 0.92504 0.91347 0.87347 1.20797 1.07228 0.89981 1.03573 1.21080 0.93237 1.00604 0.91130 1.21427 1.07088 0.93403 1.03985 1.18752 0.90918 0.92274 0.87644 1.86057 1.64697 1.38995 1.35029 1.23374 1.00320 0.93506 0.90388 1.19218 1.07026 0.96583 0.98504 1.20274 1.01885 0.90452 0.96526 0.94986 0.92039 0.93507 0.95141 0.92017 0.92816 0.84649 0.90186 0.88484 0.83998 0.81426 0.82343 0.86710 0.91568 0.90998 0.89629 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.85 71.98 0.71 -4.35 16 2 C -0.10 -4.86 5.45 30.59 0.17 -4.69 16 3 C 0.22 11.07 1.80 44.17 0.08 11.15 16 4 H 0.00 0.14 7.25 -2.38 -0.02 0.13 16 5 C -0.56 -30.84 8.21 25.60 0.21 -30.63 16 6 H 0.05 2.53 7.76 -2.91 -0.02 2.51 16 7 C 0.02 1.28 5.29 84.66 0.45 1.73 16 8 N -0.91 -52.15 11.29 21.45 0.24 -51.91 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.66 -27.56 5.44 -472.49 -2.57 -30.13 16 14 C 0.06 2.55 2.51 45.08 0.11 2.67 16 15 H 0.02 1.06 7.60 -2.38 -0.02 1.05 16 16 C 0.08 2.95 6.55 72.12 0.47 3.42 16 17 O -0.33 -11.83 10.27 -91.97 -0.94 -12.78 16 18 C 0.15 4.76 6.47 22.51 0.15 4.90 16 19 C -0.20 -5.11 9.93 22.44 0.22 -4.89 16 20 C -0.04 -0.85 10.03 22.20 0.22 -0.63 16 21 C -0.24 -5.05 9.03 22.35 0.20 -4.85 16 22 C 0.15 4.14 6.65 22.54 0.15 4.29 16 23 O -0.33 -8.59 9.64 -92.36 -0.89 -9.48 16 24 C 0.02 0.27 9.81 113.37 1.11 1.38 16 25 C -0.21 -6.91 5.76 -19.66 -0.11 -7.03 16 26 C -0.05 -1.87 4.74 29.89 0.14 -1.72 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 2.28 7.63 -2.39 -0.02 2.26 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 3.32 5.95 -2.39 -0.01 3.31 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.34 13.79 8.09 -89.70 -0.73 13.06 16 34 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.10 3.71 7.53 -2.39 -0.02 3.69 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.16 2.21 6.28 -2.91 -0.02 2.20 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.07 0.82 7.64 -2.39 -0.02 0.80 16 41 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 42 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 43 H 0.07 2.45 7.84 -2.39 -0.02 2.43 16 Total: -1.00 -63.85 344.12 2.43 -61.42 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.28 Total: 26.00 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 4.28 Total: -29.25 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.33 Total: -82.04 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.83 Total: -22.26 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.85 2.43 -61.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173152951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.566 kcal (2) G-P(sol) polarization free energy of solvation -63.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds