Wall clock time and date at job start Tue Mar 31 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 H 1.08998 * 109.46645 * 304.99685 * 3 2 1 5 5 C 1.50703 * 109.46875 * 184.99938 * 3 2 1 6 6 H 1.07996 * 119.99787 * 240.00073 * 5 3 2 7 7 C 1.37876 * 119.99988 * 60.00372 * 5 3 2 8 8 N 1.31522 * 120.00294 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00159 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47344 * 59.99539 * 9 7 5 11 11 H 1.48498 * 109.47233 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46781 * 299.99964 * 9 7 5 13 13 N 1.46499 * 109.47098 * 65.00281 * 3 2 1 14 14 C 1.34780 * 119.99445 * 275.00078 * 13 3 2 15 15 O 1.21274 * 120.00289 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99422 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46533 * 304.99315 * 16 14 13 18 18 C 1.52996 * 109.47259 * 64.99681 * 16 14 13 19 19 O 1.42903 * 109.46549 * 184.99997 * 16 14 13 20 20 C 1.35901 * 116.99702 * 155.12560 * 19 16 14 21 21 C 1.38753 * 120.05748 * 5.41433 * 20 19 16 22 22 C 1.38122 * 119.94444 * 180.02562 * 21 20 19 23 23 C 1.38285 * 120.05795 * 0.02562 * 22 21 20 24 24 C 1.38251 * 120.10929 * 0.02562 * 23 22 21 25 25 C 1.38170 * 120.05277 * 359.67433 * 24 23 22 26 26 C 1.50700 * 120.02633 * 180.30075 * 25 24 23 27 27 H 1.08995 * 109.47714 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47041 * 59.99484 * 1 2 3 29 29 H 1.09003 * 109.47035 * 300.00180 * 1 2 3 30 30 H 1.09004 * 109.47041 * 120.00516 * 2 1 3 31 31 H 1.09003 * 109.47035 * 239.99820 * 2 1 3 32 32 H 0.97000 * 120.00326 * 180.02562 * 8 7 5 33 33 H 0.96993 * 120.00031 * 94.99647 * 13 3 2 34 34 H 1.08999 * 109.47169 * 180.02562 * 18 16 14 35 35 H 1.08998 * 109.47264 * 300.00186 * 18 16 14 36 36 H 1.09003 * 109.46952 * 59.99692 * 18 16 14 37 37 H 1.08006 * 120.02674 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.97149 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.94490 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.96997 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.47330 * 270.32386 * 26 25 24 42 42 H 1.09001 * 109.47069 * 30.32255 * 26 25 24 43 43 H 1.08995 * 109.47336 * 150.32463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8886 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3365 -2.1730 9 14 6.0050 0.8809 -1.3818 10 1 6.5975 0.1469 -0.2350 11 1 6.3978 0.2164 -2.6504 12 1 6.4996 2.2811 -1.3821 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6644 1.3669 15 8 -0.3391 2.6327 0.4341 16 6 0.0369 3.3387 2.6545 17 1 0.1534 2.6389 3.4821 18 6 0.9296 4.5589 2.8887 19 8 -1.3275 3.7554 2.5715 20 6 -2.0025 3.8944 3.7429 21 6 -1.3363 3.7449 4.9508 22 6 -2.0246 3.8861 6.1399 23 6 -3.3767 4.1759 6.1273 24 6 -4.0430 4.3244 4.9250 25 6 -3.3576 4.1901 3.7329 26 6 -4.0830 4.3588 2.4228 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8293 -0.0620 -2.9496 33 1 2.2720 2.1230 1.9977 34 1 0.6418 5.0463 3.8202 35 1 1.9703 4.2410 2.9519 36 1 0.8131 5.2585 2.0609 37 1 -0.2803 3.5182 4.9612 38 1 -1.5067 3.7694 7.0803 39 1 -3.9133 4.2856 7.0581 40 1 -5.0991 4.5502 4.9178 41 1 -4.4778 3.3956 2.0993 42 1 -4.9045 5.0637 2.5505 43 1 -3.3916 4.7390 1.6709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180528257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:17 Heat of formation + Delta-G solvation = -60.995341 kcal Electronic energy + Delta-G solvation = -23537.528786 eV Core-core repulsion = 20161.727869 eV Total energy + Delta-G solvation = -3375.800917 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53908 -39.02549 -37.29277 -35.01423 -33.17673 -32.53997 -31.67078 -30.44995 -29.91833 -27.02375 -26.78896 -24.61007 -23.17468 -22.27423 -21.52833 -20.17593 -19.35157 -18.09127 -17.44722 -16.04122 -15.79494 -15.59913 -15.46914 -15.14280 -14.50086 -14.38210 -14.20731 -13.57883 -13.34832 -13.16114 -12.97328 -12.70474 -12.42584 -12.24173 -12.16841 -11.98808 -11.66135 -11.53035 -11.36738 -11.27001 -11.03494 -10.97663 -10.84450 -10.75605 -10.34874 -10.20828 -9.65059 -9.10782 -9.00755 -8.87355 -8.52765 -8.11496 -7.88764 -6.15134 -4.25194 1.23491 1.38133 2.97113 3.23173 3.26011 3.29255 3.30529 3.68719 4.12347 4.34548 4.67206 4.76689 4.83491 4.97146 5.04651 5.15885 5.20031 5.21937 5.31105 5.48706 5.61263 5.64860 5.70093 5.77173 5.81154 6.09315 6.22773 6.27503 6.37695 6.39906 6.43991 6.46709 6.64000 6.73233 7.01450 7.16547 7.32085 7.38377 7.42303 7.59014 7.69736 7.86251 8.14464 8.58158 8.73317 9.04726 9.41986 10.90097 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.003510 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.303840 B = 7975.304323 C = 8419.037091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.524 6.524 16 C 0.063 3.937 17 H 0.091 0.909 18 C -0.173 4.173 19 O -0.279 6.279 20 C 0.135 3.865 21 C -0.210 4.210 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.085 4.085 25 C -0.116 4.116 26 C -0.107 4.107 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.388 0.612 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 6.783 15.220 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.401 6.401 16 C 0.003 3.997 17 H 0.108 0.892 18 C -0.231 4.231 19 O -0.191 6.191 20 C 0.088 3.912 21 C -0.229 4.229 22 C -0.105 4.105 23 C -0.179 4.179 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.163 4.163 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.220 0.780 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.969 6.678 14.101 18.515 hybrid contribution 1.531 -0.129 0.568 1.638 sum -8.439 6.549 14.668 18.146 Atomic orbital electron populations 1.21846 0.98310 0.98138 1.01245 1.21953 0.92616 0.99762 1.02372 1.18819 0.94244 0.89140 0.80647 0.93176 1.21172 0.90565 1.39320 1.06387 0.92089 1.24884 0.98632 0.94754 0.95348 1.69884 1.35269 1.37361 1.09336 0.86507 0.84780 0.78323 0.77483 1.20158 1.21115 1.20168 1.46413 1.13981 1.56045 1.18839 1.19786 0.83388 0.79795 0.88138 1.90707 1.51056 1.58616 1.39698 1.22385 0.81087 0.97385 0.98881 0.89169 1.22302 0.99789 0.97689 1.03308 1.86234 1.23875 1.81709 1.27266 1.18965 0.91467 0.95658 0.85060 1.21330 1.00872 1.08479 0.92222 1.20897 0.94390 0.97924 0.97301 1.20994 0.94793 1.04330 0.97824 1.20870 0.99475 0.98794 0.91199 1.19320 0.90938 1.04823 0.96597 1.20625 0.99677 1.02032 0.93994 0.95759 0.93082 0.94408 0.94987 0.88165 0.92440 0.77970 0.91299 0.90071 0.90705 0.85213 0.86007 0.86168 0.85602 0.91273 0.91974 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.79 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.37 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.06 4.98 -54.93 -0.27 -14.33 16 14 C 0.51 9.99 5.75 -10.98 -0.06 9.93 16 15 O -0.52 -12.51 13.65 -14.30 -0.20 -12.71 16 16 C 0.06 0.95 2.64 -27.88 -0.07 0.88 16 17 H 0.09 1.17 6.32 -51.93 -0.33 0.84 16 18 C -0.17 -2.16 9.12 37.16 0.34 -1.82 16 19 O -0.28 -4.61 8.38 -39.29 -0.33 -4.94 16 20 C 0.13 1.91 6.57 -39.22 -0.26 1.65 16 21 C -0.21 -2.51 8.24 -39.43 -0.32 -2.84 16 22 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 23 C -0.16 -1.59 10.04 -39.56 -0.40 -1.99 16 24 C -0.09 -0.91 9.70 -39.60 -0.38 -1.29 16 25 C -0.12 -1.51 5.89 -104.47 -0.62 -2.12 16 26 C -0.11 -1.30 9.79 36.01 0.35 -0.95 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 29 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 34 H 0.07 0.73 6.90 -51.93 -0.36 0.37 16 35 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.13 1.36 5.43 -52.48 -0.28 1.07 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 LS Contribution 347.50 15.07 5.24 5.24 Total: -1.00 -30.52 347.50 -8.60 -39.12 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.44 Total: 7.87 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.20 Total: -11.73 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.35 Total: -38.08 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.52 Total: -17.65 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.52 -8.60 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180528257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.879 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds