Wall clock time and date at job start Tue Mar 31 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 H 1.08998 * 109.46645 * 304.99685 * 3 2 1 5 5 C 1.50703 * 109.46875 * 184.99938 * 3 2 1 6 6 H 1.07996 * 119.99787 * 240.00073 * 5 3 2 7 7 C 1.37876 * 119.99988 * 60.00372 * 5 3 2 8 8 N 1.31522 * 120.00294 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00159 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47344 * 59.99539 * 9 7 5 11 11 H 1.48498 * 109.47233 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46781 * 299.99964 * 9 7 5 13 13 N 1.46499 * 109.47098 * 65.00281 * 3 2 1 14 14 C 1.34780 * 119.99445 * 275.00078 * 13 3 2 15 15 O 1.21274 * 120.00289 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99422 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.46533 * 304.99315 * 16 14 13 18 18 C 1.52996 * 109.47259 * 64.99681 * 16 14 13 19 19 O 1.42903 * 109.46549 * 184.99997 * 16 14 13 20 20 C 1.35901 * 116.99702 * 155.12560 * 19 16 14 21 21 C 1.38753 * 120.05748 * 5.41433 * 20 19 16 22 22 C 1.38122 * 119.94444 * 180.02562 * 21 20 19 23 23 C 1.38285 * 120.05795 * 0.02562 * 22 21 20 24 24 C 1.38251 * 120.10929 * 0.02562 * 23 22 21 25 25 C 1.38170 * 120.05277 * 359.67433 * 24 23 22 26 26 C 1.50700 * 120.02633 * 180.30075 * 25 24 23 27 27 H 1.08995 * 109.47714 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47041 * 59.99484 * 1 2 3 29 29 H 1.09003 * 109.47035 * 300.00180 * 1 2 3 30 30 H 1.09004 * 109.47041 * 120.00516 * 2 1 3 31 31 H 1.09003 * 109.47035 * 239.99820 * 2 1 3 32 32 H 0.97000 * 120.00326 * 180.02562 * 8 7 5 33 33 H 0.96993 * 120.00031 * 94.99647 * 13 3 2 34 34 H 1.08999 * 109.47169 * 180.02562 * 18 16 14 35 35 H 1.08998 * 109.47264 * 300.00186 * 18 16 14 36 36 H 1.09003 * 109.46952 * 59.99692 * 18 16 14 37 37 H 1.08006 * 120.02674 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.97149 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.94490 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.96997 * 179.97438 * 24 23 22 41 41 H 1.09007 * 109.47330 * 270.32386 * 26 25 24 42 42 H 1.09001 * 109.47069 * 30.32255 * 26 25 24 43 43 H 1.08995 * 109.47336 * 150.32463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8886 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3365 -2.1730 9 14 6.0050 0.8809 -1.3818 10 1 6.5975 0.1469 -0.2350 11 1 6.3978 0.2164 -2.6504 12 1 6.4996 2.2811 -1.3821 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6644 1.3669 15 8 -0.3391 2.6327 0.4341 16 6 0.0369 3.3387 2.6545 17 1 0.1534 2.6389 3.4821 18 6 0.9296 4.5589 2.8887 19 8 -1.3275 3.7554 2.5715 20 6 -2.0025 3.8944 3.7429 21 6 -1.3363 3.7449 4.9508 22 6 -2.0246 3.8861 6.1399 23 6 -3.3767 4.1759 6.1273 24 6 -4.0430 4.3244 4.9250 25 6 -3.3576 4.1901 3.7329 26 6 -4.0830 4.3588 2.4228 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8293 -0.0620 -2.9496 33 1 2.2720 2.1230 1.9977 34 1 0.6418 5.0463 3.8202 35 1 1.9703 4.2410 2.9519 36 1 0.8131 5.2585 2.0609 37 1 -0.2803 3.5182 4.9612 38 1 -1.5067 3.7694 7.0803 39 1 -3.9133 4.2856 7.0581 40 1 -5.0991 4.5502 4.9178 41 1 -4.4778 3.3956 2.0993 42 1 -4.9045 5.0637 2.5505 43 1 -3.3916 4.7390 1.6709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180528257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:17 Heat of formation + Delta-G solvation = -78.521373 kcal Electronic energy + Delta-G solvation = -23538.288772 eV Core-core repulsion = 20161.727869 eV Total energy + Delta-G solvation = -3376.560903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66608 -40.45012 -38.40043 -36.86485 -34.54431 -33.93811 -33.20984 -31.92518 -30.83604 -28.93873 -27.68960 -25.89826 -24.90027 -23.48147 -22.41691 -21.82168 -21.07788 -19.11524 -19.06487 -17.63075 -17.27099 -16.77260 -16.65152 -16.50783 -16.03618 -15.72591 -15.36551 -15.05403 -14.59559 -14.45179 -14.07949 -13.99958 -13.81992 -13.59276 -13.30627 -13.18100 -13.12917 -13.07486 -12.92423 -12.70069 -12.64598 -12.22075 -12.17889 -12.11817 -11.99405 -11.69014 -11.59190 -11.08203 -10.64461 -10.49803 -9.73480 -9.69489 -9.05529 -8.15766 -6.33617 0.40340 0.50885 1.45881 1.47736 1.55318 1.70808 1.77923 2.41164 2.81465 2.84333 3.13862 3.63498 3.82304 3.90379 3.91833 3.97936 4.23544 4.36633 4.44045 4.45971 4.53520 4.62625 4.64669 4.72956 4.73467 4.77543 4.78350 4.99842 5.03454 5.09539 5.22687 5.32119 5.40623 5.44668 5.52316 5.55294 5.59504 5.62836 5.76398 5.86744 5.94288 6.14937 6.44385 6.73523 6.91916 7.32394 7.51177 8.89492 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028939 B = 0.003510 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.303840 B = 7975.304323 C = 8419.037091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.696 5.696 14 C 0.501 3.499 15 O -0.573 6.573 16 C 0.073 3.927 17 H 0.118 0.882 18 C -0.166 4.166 19 O -0.310 6.310 20 C 0.101 3.899 21 C -0.215 4.215 22 C -0.088 4.088 23 C -0.157 4.157 24 C -0.087 4.087 25 C -0.140 4.140 26 C -0.104 4.104 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 7.188 18.817 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.346 5.346 14 C 0.286 3.714 15 O -0.453 6.453 16 C 0.014 3.986 17 H 0.135 0.865 18 C -0.223 4.223 19 O -0.223 6.223 20 C 0.056 3.944 21 C -0.234 4.234 22 C -0.105 4.105 23 C -0.175 4.175 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.404 7.098 17.754 21.308 hybrid contribution 1.240 -0.222 -0.496 1.353 sum -8.164 6.876 17.258 20.292 Atomic orbital electron populations 1.21683 0.97303 0.99124 1.00024 1.21805 0.93400 0.99252 1.01568 1.18393 0.93824 0.89045 0.81035 0.98495 1.21541 0.91138 1.39079 1.06846 0.90604 1.25784 1.03348 0.94356 0.95003 1.70049 1.37204 1.38260 1.09889 0.85415 0.79022 0.78464 0.77537 1.18756 1.21437 1.19612 1.46114 1.14791 1.55776 1.17944 1.20654 0.82422 0.78871 0.89414 1.90684 1.52383 1.60245 1.41990 1.22276 0.81549 0.98649 0.96159 0.86471 1.22292 1.00129 0.96183 1.03725 1.86185 1.24375 1.82484 1.29272 1.19295 0.92105 0.97929 0.85071 1.21543 1.01648 1.08269 0.91928 1.21307 0.94763 0.96659 0.97814 1.21431 0.94921 1.02465 0.98661 1.21193 1.00662 0.97949 0.90635 1.19592 0.91034 1.05904 0.97534 1.20578 0.99789 1.02145 0.93507 0.93489 0.95755 0.94162 0.93687 0.90824 0.92605 0.75838 0.88791 0.88362 0.92623 0.83887 0.83058 0.83125 0.83231 0.91982 0.89503 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.52 71.98 0.61 -5.13 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.23 2.24 44.25 0.10 14.33 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -28.32 8.73 25.60 0.22 -28.10 16 6 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -52.15 11.29 21.45 0.24 -51.90 16 9 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 N -0.70 -27.96 4.98 -446.09 -2.22 -30.18 16 14 C 0.50 20.21 5.75 87.66 0.50 20.71 16 15 O -0.57 -28.89 13.65 15.98 0.22 -28.67 16 16 C 0.07 2.18 2.64 29.85 0.08 2.25 16 17 H 0.12 2.80 6.32 -2.39 -0.02 2.79 16 18 C -0.17 -3.89 9.12 71.98 0.66 -3.24 16 19 O -0.31 -10.43 8.38 -73.45 -0.62 -11.05 16 20 C 0.10 2.80 6.57 22.50 0.15 2.95 16 21 C -0.22 -4.62 8.24 22.37 0.18 -4.43 16 22 C -0.09 -1.47 10.04 22.25 0.22 -1.25 16 23 C -0.16 -2.51 10.04 22.28 0.22 -2.29 16 24 C -0.09 -1.63 9.70 22.26 0.22 -1.42 16 25 C -0.14 -3.55 5.89 -19.77 -0.12 -3.66 16 26 C -0.10 -2.59 9.79 71.24 0.70 -1.89 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.02 1.21 7.85 -2.38 -0.02 1.19 16 29 H 0.04 1.81 5.65 -2.39 -0.01 1.80 16 30 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.07 4.06 5.95 -2.39 -0.01 4.05 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.41 13.23 8.32 -92.71 -0.77 12.46 16 34 H 0.09 1.75 6.90 -2.39 -0.02 1.73 16 35 H 0.10 1.94 7.92 -2.39 -0.02 1.92 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.14 2.53 5.43 -2.91 -0.02 2.52 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.09 1.63 8.09 -2.39 -0.02 1.61 16 43 H 0.05 1.42 7.53 -2.39 -0.02 1.40 16 Total: -1.00 -69.97 347.50 4.25 -65.72 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.24 Total: 28.42 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.37 Total: -15.71 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.98 Total: -82.08 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.40 Total: -39.71 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -69.97 4.25 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180528257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.806 kcal (2) G-P(sol) polarization free energy of solvation -69.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds