Wall clock time and date at job start Tue Mar 31 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47199 * 2 1 4 4 H 1.09007 * 109.47196 * 305.00182 * 3 2 1 5 5 C 1.50697 * 109.47025 * 185.00129 * 3 2 1 6 6 H 1.08002 * 119.99596 * 239.99565 * 5 3 2 7 7 C 1.37877 * 120.00248 * 59.99751 * 5 3 2 8 8 N 1.31516 * 119.99978 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46860 * 90.00134 * 9 7 5 11 11 H 1.48500 * 109.47185 * 210.00137 * 9 7 5 12 12 H 1.48502 * 109.47127 * 330.00454 * 9 7 5 13 13 N 1.46497 * 109.47362 * 64.99768 * 3 2 1 14 14 C 1.34779 * 120.00168 * 275.00539 * 13 3 2 15 15 O 1.21279 * 120.00109 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99911 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47332 * 59.99760 * 16 14 13 18 18 C 1.52993 * 109.46833 * 299.99520 * 16 14 13 19 19 O 1.42898 * 109.46792 * 179.97438 * 16 14 13 20 20 C 1.35901 * 117.00089 * 204.80524 * 19 16 14 21 21 C 1.38756 * 120.04973 * 354.58892 * 20 19 16 22 22 C 1.38128 * 119.93920 * 180.25647 * 21 20 19 23 23 C 1.38286 * 120.05838 * 0.03401 * 22 21 20 24 24 C 1.38244 * 120.10851 * 359.96778 * 23 22 21 25 25 C 1.38166 * 120.05837 * 0.02562 * 24 23 22 26 26 C 1.50700 * 120.02574 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46871 * 59.99739 * 1 2 3 28 28 H 1.08994 * 109.47137 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46841 * 300.00679 * 1 2 3 30 30 H 1.08999 * 109.47239 * 239.99973 * 2 1 3 31 31 H 1.08999 * 109.47324 * 119.99706 * 2 1 3 32 32 H 0.97001 * 120.00122 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99699 * 95.00083 * 13 3 2 34 34 H 1.08999 * 109.47253 * 180.02562 * 18 16 14 35 35 H 1.08996 * 109.47357 * 300.00224 * 18 16 14 36 36 H 1.08996 * 109.47468 * 60.00126 * 18 16 14 37 37 H 1.07991 * 120.03391 * 0.25136 * 21 20 19 38 38 H 1.08001 * 119.96898 * 180.02562 * 22 21 20 39 39 H 1.07993 * 119.94627 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.97085 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46825 * 270.02117 * 26 25 24 42 42 H 1.08992 * 109.47471 * 30.01971 * 26 25 24 43 43 H 1.09002 * 109.46767 * 150.02546 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5549 -0.3503 -0.7602 11 1 6.3830 0.9222 -2.8173 12 1 6.5571 2.0737 -0.6902 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3393 2.6326 0.4341 16 6 0.0367 3.3387 2.6544 17 1 0.7281 4.1542 2.8666 18 6 0.0808 2.3225 3.7972 19 8 -1.2884 3.8586 2.5295 20 6 -1.6199 4.9028 3.3338 21 6 -0.7295 5.3439 4.3021 22 6 -1.0709 6.4020 5.1219 23 6 -2.2992 7.0209 4.9786 24 6 -3.1881 6.5831 4.0145 25 6 -2.8513 5.5253 3.1920 26 6 -3.8210 5.0483 2.1417 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0605 -2.9503 33 1 2.2720 2.1232 1.9977 34 1 -0.2078 2.8100 4.7284 35 1 -0.6106 1.5070 3.5850 36 1 1.0917 1.9262 3.8923 37 1 0.2296 4.8606 4.4149 38 1 -0.3780 6.7460 5.8755 39 1 -2.5645 7.8476 5.6207 40 1 -4.1469 7.0678 3.9048 41 1 -4.4648 4.2771 2.5650 42 1 -4.4313 5.8856 1.8035 43 1 -3.2684 4.6369 1.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180528258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:20 Heat of formation + Delta-G solvation = -60.975102 kcal Electronic energy + Delta-G solvation = -23532.156791 eV Core-core repulsion = 20156.356751 eV Total energy + Delta-G solvation = -3375.800039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54013 -39.03053 -37.28882 -35.01369 -33.18430 -32.54917 -31.63786 -30.48685 -29.92468 -26.97839 -26.78635 -24.62117 -23.18437 -22.28136 -21.53089 -20.17337 -19.33973 -18.10436 -17.43550 -16.04012 -15.80017 -15.58332 -15.49083 -15.13759 -14.48892 -14.39096 -14.28700 -13.44465 -13.36509 -13.14578 -12.99321 -12.70066 -12.50554 -12.25937 -12.15159 -11.91559 -11.76111 -11.50174 -11.36587 -11.26847 -11.03278 -10.97836 -10.83258 -10.74643 -10.33605 -10.20868 -9.65115 -9.09770 -9.00652 -8.86922 -8.53372 -8.11198 -7.88889 -6.15379 -4.25290 1.23891 1.38673 2.96934 3.21965 3.26501 3.29767 3.31811 3.68798 4.11981 4.34588 4.67608 4.77182 4.83721 4.97469 5.02453 5.16040 5.20408 5.22385 5.30497 5.48293 5.61997 5.63431 5.69375 5.75380 5.82148 6.06482 6.23700 6.27911 6.38038 6.40622 6.44831 6.47537 6.64429 6.73622 7.01901 7.16783 7.32355 7.38532 7.42647 7.59187 7.69733 7.86415 8.14565 8.58126 8.73368 9.04667 9.41960 10.89887 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025599 B = 0.003555 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.518705 B = 7873.970605 C = 8380.738560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.525 6.525 16 C 0.062 3.938 17 H 0.092 0.908 18 C -0.173 4.173 19 O -0.279 6.279 20 C 0.135 3.865 21 C -0.210 4.210 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.085 4.085 25 C -0.116 4.116 26 C -0.108 4.108 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 8.752 14.448 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.401 6.401 16 C 0.002 3.998 17 H 0.110 0.890 18 C -0.231 4.231 19 O -0.191 6.191 20 C 0.089 3.911 21 C -0.229 4.229 22 C -0.105 4.105 23 C -0.179 4.179 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.165 4.165 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.283 8.507 13.390 18.380 hybrid contribution 1.587 0.028 0.500 1.664 sum -7.695 8.535 13.890 18.028 Atomic orbital electron populations 1.21850 0.98289 0.98123 1.01299 1.21942 0.92637 0.99696 1.02347 1.18826 0.94251 0.89182 0.80642 0.93212 1.21211 0.90580 1.39223 1.06393 0.92057 1.24885 0.98639 0.94773 0.95341 1.69893 1.35163 1.37455 1.09309 0.86450 0.84801 0.78437 0.77425 1.20531 1.21051 1.19862 1.46417 1.13959 1.56078 1.18805 1.19789 0.83354 0.80062 0.87904 1.90708 1.51086 1.58571 1.39766 1.22383 0.83907 0.97243 0.96262 0.89004 1.22309 1.04007 0.99632 0.97161 1.86231 1.30387 1.44533 1.57909 1.18964 0.93836 0.88055 0.90284 1.21331 1.00784 1.01612 0.99159 1.20900 0.96505 0.94895 0.98209 1.20993 0.94867 1.01719 1.00365 1.20869 0.99328 0.95529 0.94609 1.19317 0.94209 0.97662 1.00492 1.20641 0.97520 1.00922 0.97385 0.93129 0.95784 0.94271 0.88216 0.94974 0.92502 0.77958 0.91267 0.90773 0.90139 0.85207 0.86004 0.86169 0.85608 0.91483 0.91920 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.70 2.24 -69.09 -0.15 6.55 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.74 16 9 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.70 -14.03 4.91 -54.93 -0.27 -14.30 16 14 C 0.51 9.98 5.80 -10.98 -0.06 9.91 16 15 O -0.52 -12.51 13.64 -14.35 -0.20 -12.70 16 16 C 0.06 0.94 2.65 -27.88 -0.07 0.87 16 17 H 0.09 1.21 6.31 -51.93 -0.33 0.88 16 18 C -0.17 -2.11 9.07 37.15 0.34 -1.77 16 19 O -0.28 -4.60 8.38 -39.34 -0.33 -4.93 16 20 C 0.13 1.92 6.57 -39.22 -0.26 1.66 16 21 C -0.21 -2.53 8.23 -39.43 -0.32 -2.85 16 22 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16 23 C -0.16 -1.60 10.04 -39.56 -0.40 -2.00 16 24 C -0.09 -0.91 9.70 -39.61 -0.38 -1.30 16 25 C -0.12 -1.51 5.89 -104.48 -0.62 -2.13 16 26 C -0.11 -1.32 9.79 36.01 0.35 -0.96 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.56 7.96 -40.82 -0.32 6.24 16 34 H 0.07 0.72 6.90 -51.93 -0.36 0.36 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.86 7.56 -51.93 -0.39 0.46 16 37 H 0.13 1.37 5.43 -52.49 -0.29 1.08 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.08 1.13 7.53 -51.93 -0.39 0.74 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -30.54 346.69 -8.57 -39.12 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.40 Total: 7.81 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.20 Total: -11.73 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.36 Total: -38.04 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.53 Total: -17.63 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.54 -8.57 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180528258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.860 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds