Wall clock time and date at job start Tue Mar 31 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47199 * 2 1 4 4 H 1.09007 * 109.47196 * 305.00182 * 3 2 1 5 5 C 1.50697 * 109.47025 * 185.00129 * 3 2 1 6 6 H 1.08002 * 119.99596 * 239.99565 * 5 3 2 7 7 C 1.37877 * 120.00248 * 59.99751 * 5 3 2 8 8 N 1.31516 * 119.99978 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46860 * 90.00134 * 9 7 5 11 11 H 1.48500 * 109.47185 * 210.00137 * 9 7 5 12 12 H 1.48502 * 109.47127 * 330.00454 * 9 7 5 13 13 N 1.46497 * 109.47362 * 64.99768 * 3 2 1 14 14 C 1.34779 * 120.00168 * 275.00539 * 13 3 2 15 15 O 1.21279 * 120.00109 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99911 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.47332 * 59.99760 * 16 14 13 18 18 C 1.52993 * 109.46833 * 299.99520 * 16 14 13 19 19 O 1.42898 * 109.46792 * 179.97438 * 16 14 13 20 20 C 1.35901 * 117.00089 * 204.80524 * 19 16 14 21 21 C 1.38756 * 120.04973 * 354.58892 * 20 19 16 22 22 C 1.38128 * 119.93920 * 180.25647 * 21 20 19 23 23 C 1.38286 * 120.05838 * 0.03401 * 22 21 20 24 24 C 1.38244 * 120.10851 * 359.96778 * 23 22 21 25 25 C 1.38166 * 120.05837 * 0.02562 * 24 23 22 26 26 C 1.50700 * 120.02574 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46871 * 59.99739 * 1 2 3 28 28 H 1.08994 * 109.47137 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46841 * 300.00679 * 1 2 3 30 30 H 1.08999 * 109.47239 * 239.99973 * 2 1 3 31 31 H 1.08999 * 109.47324 * 119.99706 * 2 1 3 32 32 H 0.97001 * 120.00122 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99699 * 95.00083 * 13 3 2 34 34 H 1.08999 * 109.47253 * 180.02562 * 18 16 14 35 35 H 1.08996 * 109.47357 * 300.00224 * 18 16 14 36 36 H 1.08996 * 109.47468 * 60.00126 * 18 16 14 37 37 H 1.07991 * 120.03391 * 0.25136 * 21 20 19 38 38 H 1.08001 * 119.96898 * 180.02562 * 22 21 20 39 39 H 1.07993 * 119.94627 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.97085 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46825 * 270.02117 * 26 25 24 42 42 H 1.08992 * 109.47471 * 30.01971 * 26 25 24 43 43 H 1.09002 * 109.46767 * 150.02546 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5549 -0.3503 -0.7602 11 1 6.3830 0.9222 -2.8173 12 1 6.5571 2.0737 -0.6902 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3393 2.6326 0.4341 16 6 0.0367 3.3387 2.6544 17 1 0.7281 4.1542 2.8666 18 6 0.0808 2.3225 3.7972 19 8 -1.2884 3.8586 2.5295 20 6 -1.6199 4.9028 3.3338 21 6 -0.7295 5.3439 4.3021 22 6 -1.0709 6.4020 5.1219 23 6 -2.2992 7.0209 4.9786 24 6 -3.1881 6.5831 4.0145 25 6 -2.8513 5.5253 3.1920 26 6 -3.8210 5.0483 2.1417 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0605 -2.9503 33 1 2.2720 2.1232 1.9977 34 1 -0.2078 2.8100 4.7284 35 1 -0.6106 1.5070 3.5850 36 1 1.0917 1.9262 3.8923 37 1 0.2296 4.8606 4.4149 38 1 -0.3780 6.7460 5.8755 39 1 -2.5645 7.8476 5.6207 40 1 -4.1469 7.0678 3.9048 41 1 -4.4648 4.2771 2.5650 42 1 -4.4313 5.8856 1.8035 43 1 -3.2684 4.6369 1.2970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180528258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:20 Heat of formation + Delta-G solvation = -78.502384 kcal Electronic energy + Delta-G solvation = -23532.916831 eV Core-core repulsion = 20156.356751 eV Total energy + Delta-G solvation = -3376.560079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66918 -40.45332 -38.39703 -36.86392 -34.56257 -33.92769 -33.18275 -31.96140 -30.83991 -28.89390 -27.69118 -25.87183 -24.93353 -23.48120 -22.42291 -21.82237 -21.06094 -19.14453 -19.03755 -17.64999 -17.23063 -16.79232 -16.67678 -16.51170 -15.95203 -15.88022 -15.34152 -14.91398 -14.60856 -14.45206 -14.11004 -13.99217 -13.87498 -13.53160 -13.36454 -13.18689 -13.13204 -13.01249 -12.90492 -12.72060 -12.66442 -12.21986 -12.16402 -12.07785 -12.01544 -11.67504 -11.59646 -11.06514 -10.64908 -10.50279 -9.73445 -9.69296 -9.05826 -8.16203 -6.33972 0.40092 0.50845 1.45475 1.46246 1.56409 1.69489 1.79816 2.40890 2.81245 2.84064 3.13488 3.63683 3.81764 3.90083 3.92281 3.98681 4.23256 4.36699 4.43802 4.47473 4.55140 4.62729 4.66027 4.73627 4.74678 4.77627 4.78485 4.99813 5.04189 5.10959 5.24093 5.32305 5.41863 5.44452 5.53030 5.55155 5.59484 5.62552 5.77160 5.86656 5.94229 6.15391 6.44285 6.73429 6.91830 7.32178 7.51099 8.89216 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025599 B = 0.003555 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.518705 B = 7873.970605 C = 8380.738560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.695 5.695 14 C 0.501 3.499 15 O -0.574 6.574 16 C 0.072 3.928 17 H 0.115 0.885 18 C -0.165 4.165 19 O -0.309 6.309 20 C 0.101 3.899 21 C -0.216 4.216 22 C -0.088 4.088 23 C -0.157 4.157 24 C -0.087 4.087 25 C -0.140 4.140 26 C -0.104 4.104 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 10.121 17.639 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.286 3.714 15 O -0.454 6.454 16 C 0.013 3.987 17 H 0.133 0.867 18 C -0.223 4.223 19 O -0.223 6.223 20 C 0.056 3.944 21 C -0.234 4.234 22 C -0.106 4.106 23 C -0.175 4.175 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.161 4.161 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.380 9.892 16.637 21.092 hybrid contribution 1.220 -0.297 -0.470 1.340 sum -7.161 9.595 16.167 20.117 Atomic orbital electron populations 1.21687 0.97253 0.99122 1.00095 1.21786 0.93439 0.99106 1.01550 1.18400 0.93792 0.89143 0.81006 0.98601 1.21567 0.91166 1.39016 1.06831 0.90689 1.25782 1.03347 0.94374 0.94996 1.70055 1.37115 1.38319 1.09869 0.85358 0.79041 0.78934 0.77075 1.19598 1.21491 1.18783 1.46118 1.14737 1.55845 1.17904 1.20660 0.82383 0.79179 0.89152 1.90686 1.52387 1.60260 1.42021 1.22283 0.84366 0.98225 0.93859 0.86734 1.22300 1.04836 0.98454 0.96683 1.86181 1.30718 1.45893 1.59465 1.19294 0.95191 0.88468 0.91448 1.21544 1.00886 1.02208 0.98771 1.21308 0.97205 0.93953 0.98118 1.21429 0.94320 1.01890 0.99849 1.21191 1.00600 0.94573 0.94083 1.19596 0.94269 0.98783 1.01421 1.20585 0.97448 1.01712 0.96328 0.95891 0.93506 0.93904 0.90937 0.93592 0.92610 0.75833 0.88899 0.92272 0.88247 0.83923 0.83083 0.83122 0.83217 0.91134 0.89829 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.52 71.98 0.61 -5.10 16 2 C -0.12 -5.88 5.45 30.60 0.17 -5.71 16 3 C 0.28 14.21 2.24 44.24 0.10 14.31 16 4 H 0.00 -0.24 7.58 -2.38 -0.02 -0.26 16 5 C -0.55 -28.38 8.73 25.60 0.22 -28.15 16 6 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.81 5.29 84.65 0.45 1.25 16 8 N -0.92 -52.12 11.29 21.45 0.24 -51.88 16 9 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 13 N -0.70 -27.94 4.91 -446.09 -2.19 -30.13 16 14 C 0.50 20.20 5.80 87.66 0.51 20.71 16 15 O -0.57 -28.91 13.64 16.01 0.22 -28.69 16 16 C 0.07 2.15 2.65 29.85 0.08 2.23 16 17 H 0.12 2.83 6.31 -2.39 -0.02 2.81 16 18 C -0.17 -3.72 9.07 71.98 0.65 -3.07 16 19 O -0.31 -10.42 8.38 -73.40 -0.62 -11.04 16 20 C 0.10 2.82 6.57 22.50 0.15 2.97 16 21 C -0.22 -4.69 8.23 22.37 0.18 -4.50 16 22 C -0.09 -1.51 10.04 22.25 0.22 -1.28 16 23 C -0.16 -2.55 10.04 22.28 0.22 -2.33 16 24 C -0.09 -1.65 9.70 22.25 0.22 -1.44 16 25 C -0.14 -3.57 5.89 -19.77 -0.12 -3.69 16 26 C -0.10 -2.61 9.79 71.24 0.70 -1.91 16 27 H 0.02 1.14 7.85 -2.38 -0.02 1.12 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 30 H 0.07 3.99 5.95 -2.39 -0.01 3.98 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.41 13.23 7.96 -92.71 -0.74 12.49 16 34 H 0.09 1.67 6.90 -2.39 -0.02 1.65 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.83 7.56 -2.39 -0.02 1.81 16 37 H 0.14 2.58 5.43 -2.91 -0.02 2.56 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 43 H 0.04 1.37 7.53 -2.39 -0.02 1.35 16 Total: -1.00 -70.12 346.69 4.32 -65.80 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.27 Total: 28.21 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.37 Total: -15.71 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.95 Total: -82.01 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.40 Total: -39.73 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -70.12 4.32 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180528258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.706 kcal (2) G-P(sol) polarization free energy of solvation -70.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds