Wall clock time and date at job start Tue Mar 31 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69249 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69616 * 3 2 1 6 6 H 1.08003 * 119.99305 * 275.00302 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31515 * 119.99846 * 184.83537 * 7 5 3 9 9 Si 1.86798 * 120.00098 * 4.82881 * 7 5 3 10 10 H 1.48494 * 109.47402 * 84.86213 * 9 7 5 11 11 H 1.48503 * 109.47211 * 204.86567 * 9 7 5 12 12 H 1.48503 * 109.47036 * 324.86284 * 9 7 5 13 13 N 1.46496 * 109.47344 * 65.68934 * 3 2 1 14 14 C 1.34774 * 120.00478 * 275.00467 * 13 3 2 15 15 O 1.21281 * 119.99504 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00060 * 179.97438 * 14 13 3 17 17 C 1.50703 * 109.46942 * 179.97438 * 16 14 13 18 18 C 1.38237 * 120.00115 * 269.72687 * 17 16 14 19 19 C 1.38232 * 119.99978 * 179.76857 * 18 17 16 20 20 C 1.38240 * 120.00242 * 0.48212 * 19 18 17 21 21 C 1.50690 * 120.00274 * 179.77070 * 20 19 18 22 22 O 1.42900 * 109.47161 * 270.01993 * 21 20 19 23 23 C 1.42907 * 114.00054 * 179.97438 * 22 21 20 24 24 C 1.38243 * 119.99410 * 359.79403 * 20 19 18 25 25 C 1.38233 * 120.00259 * 359.95320 * 24 20 19 26 26 H 1.09003 * 109.46911 * 299.99730 * 1 2 3 27 27 H 1.08996 * 109.47503 * 60.00067 * 1 2 3 28 28 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47374 * 240.00005 * 2 1 3 30 30 H 1.08996 * 109.47503 * 119.99933 * 2 1 3 31 31 H 0.97005 * 119.99726 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99519 * 94.99999 * 13 3 2 33 33 H 1.09003 * 109.47503 * 299.99582 * 16 14 13 34 34 H 1.09004 * 109.47380 * 60.00325 * 16 14 13 35 35 H 1.07995 * 119.99712 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.00172 * 180.25712 * 19 18 17 37 37 H 1.09000 * 109.47377 * 30.02656 * 21 20 19 38 38 H 1.09000 * 109.47187 * 150.02632 * 21 20 19 39 39 H 1.09002 * 109.46809 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.46900 * 299.99943 * 23 22 21 41 41 H 1.09000 * 109.47073 * 60.00321 * 23 22 21 42 42 H 1.08003 * 119.99681 * 179.97438 * 24 20 19 43 43 H 1.07998 * 119.99948 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3739 -2.9865 11 1 3.7401 1.4495 -4.1029 12 1 1.7562 1.1882 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4509 2.6589 1.3900 15 8 -0.3341 2.6308 0.4659 16 6 0.0668 3.3270 2.6850 17 6 -1.3321 3.8760 2.5714 18 6 -1.5334 5.1670 2.1200 19 6 -2.8167 5.6690 2.0113 20 6 -3.8984 4.8834 2.3633 21 6 -5.2971 5.4324 2.2497 22 8 -5.6614 6.0659 3.4776 23 6 -6.9770 6.6239 3.4758 24 6 -3.6967 3.5943 2.8201 25 6 -2.4136 3.0905 2.9239 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8251 1.5977 -2.3976 32 1 2.2947 2.1151 1.9977 33 1 0.1070 2.5990 3.4954 34 1 0.7605 4.1415 2.8935 35 1 -0.6881 5.7823 1.8492 36 1 -2.9742 6.6762 1.6547 37 1 -5.3370 6.1603 1.4394 38 1 -5.9911 4.6182 2.0411 39 1 -7.1769 7.0862 4.4425 40 1 -7.0513 7.3768 2.6911 41 1 -7.7062 5.8347 3.2924 42 1 -4.5417 2.9806 3.0956 43 1 -2.2561 2.0836 3.2812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182201431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:16 Heat of formation + Delta-G solvation = -71.563413 kcal Electronic energy + Delta-G solvation = -22842.665219 eV Core-core repulsion = 19466.406036 eV Total energy + Delta-G solvation = -3376.259183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85320 -38.84011 -37.68457 -35.20014 -33.18665 -32.33824 -31.45831 -30.87304 -29.21289 -27.53076 -26.60279 -24.67244 -22.77596 -22.69290 -21.24130 -20.13344 -19.49580 -17.34502 -16.71572 -16.50004 -16.26517 -15.89788 -15.74602 -15.27767 -14.95237 -14.41902 -14.29836 -14.05775 -13.37107 -13.27014 -12.84483 -12.79070 -12.60782 -12.40274 -12.32169 -11.91968 -11.85333 -11.61632 -11.52317 -11.04582 -10.93464 -10.91624 -10.66669 -10.63984 -9.98553 -9.96919 -9.84336 -9.23356 -9.12818 -8.81483 -8.71207 -8.51552 -7.97008 -6.24044 -4.27410 1.28330 1.51517 3.25483 3.33515 3.34455 3.41846 3.44770 3.94304 4.26189 4.32526 4.69791 4.73103 4.88053 4.99891 5.03310 5.06296 5.10187 5.13136 5.19972 5.34964 5.47562 5.50812 5.60067 5.64898 5.74666 6.04934 6.06717 6.09627 6.12917 6.26694 6.43707 6.59027 6.66089 6.69922 6.79450 6.85848 6.99244 7.01711 7.05973 7.29895 7.37994 7.59476 8.15230 8.59783 8.77247 9.03907 9.38667 10.87674 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.003148 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.664375 B = 8892.292219 C = 9030.122469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.050 0.950 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.502 3.498 15 O -0.545 6.545 16 C -0.110 4.110 17 C -0.044 4.044 18 C -0.108 4.108 19 C -0.097 4.097 20 C -0.102 4.102 21 C 0.105 3.895 22 O -0.386 6.386 23 C 0.030 3.970 24 C -0.098 4.098 25 C -0.109 4.109 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.990 6.960 10.188 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.068 0.932 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.184 1.184 13 N -0.354 5.354 14 C 0.286 3.714 15 O -0.424 6.424 16 C -0.151 4.151 17 C -0.045 4.045 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.102 4.102 21 C 0.029 3.971 22 O -0.305 6.305 23 C -0.067 4.067 24 C -0.116 4.116 25 C -0.127 4.127 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.137 0.863 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.243 6.936 9.517 22.560 hybrid contribution -0.260 0.167 -0.760 0.821 sum -19.503 7.103 8.757 22.528 Atomic orbital electron populations 1.21895 0.97409 0.98731 1.02066 1.22068 0.93654 0.99525 1.01138 1.19148 0.95395 0.89055 0.82952 0.93199 1.21025 0.88755 1.51628 0.95421 0.90372 1.24939 0.94864 0.93717 0.98811 1.69886 1.09762 1.48424 1.24477 0.86905 0.81279 0.79618 0.82217 1.19908 1.21250 1.18354 1.46603 1.14470 1.56129 1.18186 1.20313 0.82738 0.79353 0.88947 1.90680 1.50771 1.59633 1.41317 1.20794 0.94676 1.01685 0.97899 1.19397 0.94117 0.93786 0.97157 1.20977 0.96993 0.95451 0.99225 1.20923 0.92081 0.99141 0.99371 1.19458 0.93726 0.94697 1.02321 1.21334 0.93042 0.96081 0.86653 1.87985 1.32055 1.74993 1.35470 1.22752 0.84153 0.97329 1.02423 1.20913 0.96953 0.95013 0.98703 1.20939 0.92044 0.99297 1.00381 0.93116 0.93171 0.95214 0.92203 0.93067 0.92259 0.77425 0.88423 0.88271 0.85981 0.86240 0.92526 0.92541 0.89632 0.94094 0.94097 0.86271 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.53 37.16 0.32 -2.55 16 2 C -0.12 -2.69 5.59 -26.73 -0.15 -2.84 16 3 C 0.24 5.53 1.89 -69.08 -0.13 5.40 16 4 H 0.05 1.29 4.73 -51.92 -0.25 1.04 16 5 C -0.53 -14.08 9.05 -34.44 -0.31 -14.40 16 6 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 9 Si 0.87 21.61 26.99 -169.99 -4.59 17.02 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.26 -6.34 6.82 56.52 0.39 -5.95 16 13 N -0.71 -13.66 5.03 -54.93 -0.28 -13.94 16 14 C 0.50 9.18 6.42 -10.99 -0.07 9.11 16 15 O -0.55 -11.91 13.18 5.56 0.07 -11.84 16 16 C -0.11 -1.49 5.83 -29.04 -0.17 -1.66 16 17 C -0.04 -0.62 4.37 -104.62 -0.46 -1.08 16 18 C -0.11 -1.50 9.70 -39.58 -0.38 -1.88 16 19 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 20 C -0.10 -1.28 5.51 -104.62 -0.58 -1.86 16 21 C 0.10 1.08 6.06 36.00 0.22 1.30 16 22 O -0.39 -4.26 10.69 -35.23 -0.38 -4.63 16 23 C 0.03 0.22 11.01 101.05 1.11 1.33 16 24 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 25 C -0.11 -1.46 9.70 -39.58 -0.38 -1.84 16 26 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 27 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.39 6.65 8.59 -40.82 -0.35 6.30 16 33 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -32.35 356.05 -7.66 -40.01 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.78 Total: 5.39 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -1.85 Total: -12.06 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.50 Total: -39.25 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.30 Total: -16.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.35 -7.66 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182201431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.550 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds