Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69249 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69616 * 3 2 1 6 6 H 1.08003 * 119.99305 * 275.00302 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31515 * 119.99846 * 184.83537 * 7 5 3 9 9 Si 1.86798 * 120.00098 * 4.82881 * 7 5 3 10 10 H 1.48494 * 109.47402 * 84.86213 * 9 7 5 11 11 H 1.48503 * 109.47211 * 204.86567 * 9 7 5 12 12 H 1.48503 * 109.47036 * 324.86284 * 9 7 5 13 13 N 1.46496 * 109.47344 * 65.68934 * 3 2 1 14 14 C 1.34774 * 120.00478 * 275.00467 * 13 3 2 15 15 O 1.21281 * 119.99504 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00060 * 179.97438 * 14 13 3 17 17 C 1.50703 * 109.46942 * 179.97438 * 16 14 13 18 18 C 1.38237 * 120.00115 * 269.72687 * 17 16 14 19 19 C 1.38232 * 119.99978 * 179.76857 * 18 17 16 20 20 C 1.38240 * 120.00242 * 0.48212 * 19 18 17 21 21 C 1.50690 * 120.00274 * 179.77070 * 20 19 18 22 22 O 1.42900 * 109.47161 * 270.01993 * 21 20 19 23 23 C 1.42907 * 114.00054 * 179.97438 * 22 21 20 24 24 C 1.38243 * 119.99410 * 359.79403 * 20 19 18 25 25 C 1.38233 * 120.00259 * 359.95320 * 24 20 19 26 26 H 1.09003 * 109.46911 * 299.99730 * 1 2 3 27 27 H 1.08996 * 109.47503 * 60.00067 * 1 2 3 28 28 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47374 * 240.00005 * 2 1 3 30 30 H 1.08996 * 109.47503 * 119.99933 * 2 1 3 31 31 H 0.97005 * 119.99726 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99519 * 94.99999 * 13 3 2 33 33 H 1.09003 * 109.47503 * 299.99582 * 16 14 13 34 34 H 1.09004 * 109.47380 * 60.00325 * 16 14 13 35 35 H 1.07995 * 119.99712 * 359.97438 * 18 17 16 36 36 H 1.08000 * 120.00172 * 180.25712 * 19 18 17 37 37 H 1.09000 * 109.47377 * 30.02656 * 21 20 19 38 38 H 1.09000 * 109.47187 * 150.02632 * 21 20 19 39 39 H 1.09002 * 109.46809 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.46900 * 299.99943 * 23 22 21 41 41 H 1.09000 * 109.47073 * 60.00321 * 23 22 21 42 42 H 1.08003 * 119.99681 * 179.97438 * 24 20 19 43 43 H 1.07998 * 119.99948 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3739 -2.9865 11 1 3.7401 1.4495 -4.1029 12 1 1.7562 1.1882 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4509 2.6589 1.3900 15 8 -0.3341 2.6308 0.4659 16 6 0.0668 3.3270 2.6850 17 6 -1.3321 3.8760 2.5714 18 6 -1.5334 5.1670 2.1200 19 6 -2.8167 5.6690 2.0113 20 6 -3.8984 4.8834 2.3633 21 6 -5.2971 5.4324 2.2497 22 8 -5.6614 6.0659 3.4776 23 6 -6.9770 6.6239 3.4758 24 6 -3.6967 3.5943 2.8201 25 6 -2.4136 3.0905 2.9239 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8251 1.5977 -2.3976 32 1 2.2947 2.1151 1.9977 33 1 0.1070 2.5990 3.4954 34 1 0.7605 4.1415 2.8935 35 1 -0.6881 5.7823 1.8492 36 1 -2.9742 6.6762 1.6547 37 1 -5.3370 6.1603 1.4394 38 1 -5.9911 4.6182 2.0411 39 1 -7.1769 7.0862 4.4425 40 1 -7.0513 7.3768 2.6911 41 1 -7.7062 5.8347 3.2924 42 1 -4.5417 2.9806 3.0956 43 1 -2.2561 2.0836 3.2812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182201431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = -92.199825 kcal Electronic energy + Delta-G solvation = -22843.560081 eV Core-core repulsion = 19466.406036 eV Total energy + Delta-G solvation = -3377.154045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.05568 -40.05652 -38.50545 -36.91412 -34.37706 -34.25076 -33.02502 -31.82915 -30.31700 -29.20303 -27.39447 -25.63821 -24.58140 -23.65644 -22.48864 -21.51126 -21.11251 -19.20640 -17.71439 -17.50222 -17.32181 -17.19603 -17.06313 -16.40863 -16.15369 -15.85673 -15.57950 -15.14523 -14.78788 -14.72107 -14.31797 -14.13666 -13.82638 -13.72954 -13.44561 -13.23097 -13.21302 -12.93848 -12.75365 -12.50969 -12.33245 -12.30595 -11.93077 -11.87161 -11.85330 -11.65768 -11.19119 -10.83640 -10.65469 -10.64867 -9.78935 -9.63449 -9.54741 -8.38997 -6.43829 0.30571 0.53910 1.27674 1.32345 1.43238 1.90505 2.26399 2.44995 2.78409 3.05994 3.24654 3.75233 3.86584 3.99924 4.13938 4.19610 4.22875 4.33810 4.40963 4.43510 4.51589 4.53082 4.58172 4.60189 4.62251 4.67916 4.81247 4.85675 4.86747 5.10242 5.12107 5.18226 5.28147 5.29925 5.44284 5.46999 5.57924 5.64841 5.69913 5.83868 6.09258 6.16112 6.20833 6.62006 7.00673 7.22630 7.58789 8.76096 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.003148 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.664375 B = 8892.292219 C = 9030.122469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.027 0.973 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.257 1.257 13 N -0.706 5.706 14 C 0.502 3.498 15 O -0.581 6.581 16 C -0.098 4.098 17 C -0.064 4.064 18 C -0.125 4.125 19 C -0.108 4.108 20 C -0.110 4.110 21 C 0.106 3.894 22 O -0.411 6.411 23 C 0.024 3.976 24 C -0.107 4.107 25 C -0.119 4.119 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.270 0.730 32 H 0.405 0.595 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.138 0.862 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.084 7.138 11.110 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.045 0.955 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.167 4.167 8 N -0.569 5.569 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.181 1.181 13 N -0.356 5.356 14 C 0.289 3.711 15 O -0.461 6.461 16 C -0.137 4.137 17 C -0.065 4.065 18 C -0.143 4.143 19 C -0.126 4.126 20 C -0.110 4.110 21 C 0.030 3.970 22 O -0.331 6.331 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.137 4.137 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.156 0.844 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.348 7.121 10.470 24.820 hybrid contribution 0.321 0.147 -0.957 1.020 sum -21.026 7.269 9.513 24.196 Atomic orbital electron populations 1.21752 0.95802 1.00141 1.01188 1.21979 0.94984 0.98102 1.01114 1.18861 0.93029 0.90230 0.84113 0.95490 1.21248 0.90449 1.50049 0.94494 0.92455 1.25578 0.95687 0.94126 1.01329 1.69980 1.11184 1.50588 1.25188 0.86091 0.79939 0.79178 0.79841 1.20152 1.20458 1.18117 1.46352 1.15576 1.56410 1.17226 1.21059 0.81502 0.78325 0.90199 1.90666 1.51637 1.60747 1.43084 1.20757 0.94849 1.02576 0.95566 1.19549 0.94544 0.94183 0.98181 1.21196 0.97693 0.95804 0.99567 1.21188 0.92019 1.00024 0.99412 1.19820 0.94912 0.94802 1.01481 1.21359 0.92004 0.96802 0.86860 1.87935 1.33990 1.75373 1.35787 1.22951 0.82801 0.97936 1.03510 1.21217 0.97415 0.95401 0.98430 1.21193 0.92274 0.99865 1.00354 0.92821 0.95179 0.92599 0.93483 0.91855 0.92113 0.75964 0.85487 0.86209 0.85547 0.84804 0.91498 0.91249 0.88587 0.93082 0.92942 0.84433 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.53 71.98 0.61 -4.41 16 2 C -0.12 -5.16 5.59 30.59 0.17 -4.99 16 3 C 0.24 11.16 1.89 44.25 0.08 11.24 16 4 H 0.03 1.39 4.73 -2.38 -0.01 1.38 16 5 C -0.52 -28.01 9.05 25.60 0.23 -27.78 16 6 H 0.06 3.25 8.06 -2.91 -0.02 3.22 16 7 C 0.03 1.86 5.47 84.65 0.46 2.32 16 8 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 9 Si 0.92 44.97 26.99 68.60 1.85 46.82 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.26 -12.29 6.82 99.48 0.68 -11.61 16 13 N -0.71 -26.49 5.03 -446.10 -2.24 -28.74 16 14 C 0.50 17.59 6.42 87.66 0.56 18.15 16 15 O -0.58 -24.83 13.18 -3.03 -0.04 -24.87 16 16 C -0.10 -2.41 5.83 29.10 0.17 -2.24 16 17 C -0.06 -1.71 4.37 -19.86 -0.09 -1.80 16 18 C -0.12 -3.30 9.70 22.27 0.22 -3.09 16 19 C -0.11 -2.67 9.70 22.27 0.22 -2.45 16 20 C -0.11 -2.60 5.51 -19.87 -0.11 -2.71 16 21 C 0.11 1.97 6.06 71.23 0.43 2.41 16 22 O -0.41 -8.33 10.69 -148.98 -1.59 -9.92 16 23 C 0.02 0.29 11.01 113.37 1.25 1.54 16 24 C -0.11 -2.51 9.70 22.27 0.22 -2.29 16 25 C -0.12 -2.98 9.70 22.27 0.22 -2.76 16 26 H 0.05 2.00 5.63 -2.39 -0.01 1.99 16 27 H 0.03 1.24 7.89 -2.39 -0.02 1.23 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.41 13.15 8.59 -92.70 -0.80 12.35 16 33 H 0.13 2.38 8.09 -2.39 -0.02 2.36 16 34 H 0.12 2.46 8.08 -2.39 -0.02 2.44 16 35 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 38 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -69.60 356.05 3.09 -66.51 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.17 Total: 24.18 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.64 Total: -18.84 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -1.94 Total: -83.88 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -1.63 Total: -34.79 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.85 Total: 46.82 kcal Total: -69.60 3.09 -66.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182201431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.688 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds