Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.38286 * 119.97585 * 264.99930 * 17 16 14 19 19 C 1.38244 * 120.11408 * 179.97438 * 18 17 16 20 20 C 1.38173 * 120.05384 * 359.96045 * 19 18 17 21 21 C 1.38709 * 119.94453 * 0.02562 * 20 19 18 22 22 O 1.35894 * 120.05715 * 179.97438 * 21 20 19 23 23 C 1.42899 * 116.99869 * 0.02562 * 22 21 20 24 24 C 1.38125 * 119.96762 * 84.73061 * 17 16 14 25 25 C 1.50700 * 120.03022 * 359.97438 * 24 17 16 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 34 34 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 35 35 H 1.08000 * 119.94128 * 359.97438 * 18 17 16 36 36 H 1.07992 * 119.97560 * 179.97438 * 19 18 17 37 37 H 1.07995 * 120.02707 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47046 * 299.99514 * 23 22 21 39 39 H 1.08997 * 109.47672 * 59.99974 * 23 22 21 40 40 H 1.09006 * 109.47164 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47231 * 90.00460 * 25 24 17 42 42 H 1.08998 * 109.47000 * 210.00643 * 25 24 17 43 43 H 1.09001 * 109.47036 * 330.00353 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -1.5535 5.2061 2.1582 19 6 -2.8342 5.7122 2.0359 20 6 -3.9254 4.8996 2.2774 21 6 -3.7350 3.5753 2.6433 22 8 -4.8065 2.7743 2.8819 23 6 -6.1009 3.3619 2.7365 24 6 -2.4485 3.0687 2.7615 25 6 -2.2382 1.6286 3.1527 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6129 3.4685 34 1 0.7277 4.1529 2.8680 35 1 -0.7019 5.8426 1.9684 36 1 -2.9819 6.7434 1.7512 37 1 -4.9256 5.2956 2.1822 38 1 -6.2002 4.1978 3.4290 39 1 -6.2248 3.7200 1.7146 40 1 -6.8652 2.6163 2.9558 41 1 -2.1741 1.5526 4.2381 42 1 -3.0753 1.0290 2.7952 43 1 -1.3129 1.2627 2.7076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186476968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = -64.062140 kcal Electronic energy + Delta-G solvation = -23638.649104 eV Core-core repulsion = 20262.715201 eV Total energy + Delta-G solvation = -3375.933903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35286 -39.00174 -37.39160 -34.99261 -33.16130 -32.33756 -31.53995 -30.66301 -27.88878 -27.65477 -26.82124 -25.93822 -23.00481 -21.73615 -21.24357 -19.94581 -19.24156 -17.66069 -16.98736 -16.48654 -15.84991 -15.63748 -15.55521 -15.19892 -14.76604 -14.31169 -13.80973 -13.70634 -13.40379 -12.96541 -12.80618 -12.62164 -12.38049 -12.17074 -11.99572 -11.95256 -11.57613 -11.26916 -11.21652 -11.14646 -11.01421 -10.96773 -10.78647 -10.66213 -10.29903 -10.10300 -9.57788 -9.05431 -8.96845 -8.48643 -8.43019 -7.99953 -7.75585 -6.09722 -4.19195 1.41807 1.57955 3.26109 3.26581 3.32062 3.32995 3.48910 3.77153 4.25801 4.47976 4.78366 4.82387 5.00251 5.03437 5.06574 5.21206 5.28941 5.32966 5.35440 5.50127 5.66866 5.68916 5.79482 5.85874 5.88044 6.01086 6.37293 6.43618 6.43986 6.53388 6.56014 6.71671 6.74667 6.87597 7.09312 7.25381 7.42171 7.44794 7.51913 7.65386 7.78014 7.94465 8.22060 8.72930 8.81707 9.21513 9.48554 10.95453 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.003611 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.358301 B = 7751.458953 C = 8175.723910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.711 5.711 14 C 0.503 3.497 15 O -0.538 6.538 16 C -0.111 4.111 17 C -0.018 4.018 18 C -0.140 4.140 19 C -0.088 4.088 20 C -0.210 4.210 21 C 0.122 3.878 22 O -0.315 6.315 23 C 0.029 3.971 24 C -0.096 4.096 25 C -0.107 4.107 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 6.983 12.123 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.360 5.360 14 C 0.287 3.713 15 O -0.416 6.416 16 C -0.151 4.151 17 C -0.019 4.019 18 C -0.158 4.158 19 C -0.106 4.106 20 C -0.229 4.229 21 C 0.077 3.923 22 O -0.229 6.229 23 C -0.066 4.066 24 C -0.097 4.097 25 C -0.163 4.163 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.489 6.634 11.284 18.796 hybrid contribution 1.111 0.291 0.077 1.151 sum -12.378 6.925 11.361 18.173 Atomic orbital electron populations 1.21855 0.98303 0.97949 1.01343 1.21927 0.92619 0.99871 1.02170 1.18746 0.94030 0.89135 0.81114 0.93417 1.21211 0.90819 1.39010 1.06239 0.92178 1.24890 0.98521 0.94858 0.95422 1.69891 1.35167 1.37590 1.09308 0.86529 0.84982 0.78276 0.77425 1.20179 1.21170 1.20225 1.46495 1.14651 1.56296 1.18515 1.20128 0.82815 0.79569 0.88783 1.90701 1.51220 1.59290 1.40346 1.20803 0.94195 1.01684 0.98399 1.19018 0.93195 0.93003 0.96658 1.20887 0.97168 0.95256 1.02472 1.20790 0.92066 0.99225 0.98568 1.21103 0.99711 0.93572 1.08501 1.18727 0.86952 0.89392 0.97202 1.86052 1.13370 1.38549 1.84923 1.23001 0.82716 0.99739 1.01183 1.18991 0.89474 0.96863 1.04341 1.20652 1.03134 0.91908 1.00647 0.93249 0.94067 0.95983 0.95108 0.88413 0.92548 0.78063 0.88379 0.88428 0.86041 0.86083 0.85923 0.92947 0.92797 0.88519 0.91720 0.91264 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.10 5.45 -26.74 -0.15 -3.24 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.80 11.30 55.43 0.63 -24.17 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.71 -14.43 5.02 -54.94 -0.28 -14.70 16 14 C 0.50 9.73 5.59 -10.99 -0.06 9.67 16 15 O -0.54 -12.52 13.17 5.56 0.07 -12.45 16 16 C -0.11 -1.60 5.15 -29.04 -0.15 -1.74 16 17 C -0.02 -0.28 4.37 -104.65 -0.46 -0.73 16 18 C -0.14 -1.97 9.68 -39.56 -0.38 -2.36 16 19 C -0.09 -1.13 10.04 -39.60 -0.40 -1.53 16 20 C -0.21 -2.69 9.04 -39.43 -0.36 -3.05 16 21 C 0.12 1.77 6.66 -39.21 -0.26 1.51 16 22 O -0.32 -4.17 9.55 -19.41 -0.19 -4.36 16 23 C 0.03 0.25 9.81 101.05 0.99 1.24 16 24 C -0.10 -1.49 5.89 -104.47 -0.62 -2.10 16 25 C -0.11 -1.54 8.99 36.01 0.32 -1.22 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 27 H 0.04 0.89 4.83 -51.93 -0.25 0.64 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16 33 H 0.10 1.21 7.01 -51.93 -0.36 0.84 16 34 H 0.10 1.17 8.05 -51.93 -0.42 0.76 16 35 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.24 6.30 -52.49 -0.33 0.90 16 38 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 39 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.01 7.54 -51.93 -0.39 0.62 16 43 H 0.07 1.09 5.33 -51.93 -0.28 0.81 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -31.63 344.36 -7.70 -39.33 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.36 Total: 7.94 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.75 Total: -12.36 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.35 Total: -38.87 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.11 Total: -16.80 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.63 -7.70 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186476968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.729 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds