Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 18 18 C 1.38286 * 119.97585 * 264.99930 * 17 16 14 19 19 C 1.38244 * 120.11408 * 179.97438 * 18 17 16 20 20 C 1.38173 * 120.05384 * 359.96045 * 19 18 17 21 21 C 1.38709 * 119.94453 * 0.02562 * 20 19 18 22 22 O 1.35894 * 120.05715 * 179.97438 * 21 20 19 23 23 C 1.42899 * 116.99869 * 0.02562 * 22 21 20 24 24 C 1.38125 * 119.96762 * 84.73061 * 17 16 14 25 25 C 1.50700 * 120.03022 * 359.97438 * 24 17 16 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 33 33 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 34 34 H 1.09003 * 109.47620 * 60.00219 * 16 14 13 35 35 H 1.08000 * 119.94128 * 359.97438 * 18 17 16 36 36 H 1.07992 * 119.97560 * 179.97438 * 19 18 17 37 37 H 1.07995 * 120.02707 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47046 * 299.99514 * 23 22 21 39 39 H 1.08997 * 109.47672 * 59.99974 * 23 22 21 40 40 H 1.09006 * 109.47164 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47231 * 90.00460 * 25 24 17 42 42 H 1.08998 * 109.47000 * 210.00643 * 25 24 17 43 43 H 1.09001 * 109.47036 * 330.00353 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 -1.3610 3.8862 2.5231 18 6 -1.5535 5.2061 2.1582 19 6 -2.8342 5.7122 2.0359 20 6 -3.9254 4.8996 2.2774 21 6 -3.7350 3.5753 2.6433 22 8 -4.8065 2.7743 2.8819 23 6 -6.1009 3.3619 2.7365 24 6 -2.4485 3.0687 2.7615 25 6 -2.2382 1.6286 3.1527 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8292 -0.0604 -2.9503 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6129 3.4685 34 1 0.7277 4.1529 2.8680 35 1 -0.7019 5.8426 1.9684 36 1 -2.9819 6.7434 1.7512 37 1 -4.9256 5.2956 2.1822 38 1 -6.2002 4.1978 3.4290 39 1 -6.2248 3.7200 1.7146 40 1 -6.8652 2.6163 2.9558 41 1 -2.1741 1.5526 4.2381 42 1 -3.0753 1.0290 2.7952 43 1 -1.3129 1.2627 2.7076 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186476968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = -83.689511 kcal Electronic energy + Delta-G solvation = -23639.500211 eV Core-core repulsion = 20262.715201 eV Total energy + Delta-G solvation = -3376.785010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43509 -40.45046 -38.47661 -36.82443 -34.32827 -34.17021 -33.01903 -32.13623 -29.37458 -28.46986 -28.30545 -27.11919 -24.93167 -22.85346 -22.53488 -21.47069 -20.94319 -18.95413 -18.45226 -17.54903 -17.36921 -17.09023 -16.62513 -16.59983 -16.17407 -16.00687 -14.97549 -14.90577 -14.67377 -14.54141 -14.17699 -13.89623 -13.87279 -13.52192 -13.25308 -13.15066 -12.93257 -12.89789 -12.81772 -12.65399 -12.55913 -12.23704 -12.16095 -12.00362 -11.90961 -11.64239 -11.50767 -11.03182 -10.63267 -10.46866 -9.55744 -9.54365 -9.01300 -8.13614 -6.31037 0.36964 0.54222 1.45820 1.47599 1.55246 1.96435 2.36954 2.41966 2.63421 3.00775 3.15741 3.72972 3.88850 4.09125 4.18256 4.25572 4.32704 4.38765 4.40665 4.50835 4.52629 4.58486 4.63419 4.73322 4.75280 4.78583 4.80230 4.84206 4.94988 5.11165 5.26851 5.34901 5.42601 5.48410 5.53235 5.59249 5.67926 5.69475 5.83534 5.88727 5.98817 6.20606 6.51144 6.78121 7.08831 7.36855 7.69644 8.91354 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.003611 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.358301 B = 7751.458953 C = 8175.723910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.708 5.708 14 C 0.502 3.498 15 O -0.580 6.580 16 C -0.098 4.098 17 C -0.038 4.038 18 C -0.155 4.155 19 C -0.091 4.091 20 C -0.211 4.211 21 C 0.108 3.892 22 O -0.334 6.334 23 C 0.019 3.981 24 C -0.122 4.122 25 C -0.101 4.101 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.117 0.883 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.934 8.003 14.003 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.358 5.358 14 C 0.289 3.711 15 O -0.461 6.461 16 C -0.137 4.137 17 C -0.038 4.038 18 C -0.173 4.173 19 C -0.109 4.109 20 C -0.230 4.230 21 C 0.063 3.937 22 O -0.248 6.248 23 C -0.075 4.075 24 C -0.123 4.123 25 C -0.157 4.157 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.135 0.865 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.471 7.669 13.213 20.368 hybrid contribution 0.967 0.015 -0.520 1.098 sum -12.504 7.684 12.693 19.404 Atomic orbital electron populations 1.21689 0.97082 0.98883 1.00338 1.21771 0.93592 0.99356 1.01159 1.18293 0.93440 0.89023 0.81573 0.98746 1.21585 0.91561 1.38796 1.06642 0.90926 1.25784 1.03258 0.94458 0.95085 1.70057 1.37095 1.38452 1.09845 0.85441 0.79214 0.78437 0.77495 1.18865 1.21384 1.19640 1.46260 1.15696 1.56348 1.17487 1.20958 0.81614 0.78544 0.90006 1.90685 1.52292 1.60670 1.42443 1.20759 0.94607 1.02642 0.95697 1.19171 0.93315 0.93673 0.97680 1.21179 0.98378 0.95232 1.02557 1.21178 0.91547 1.00601 0.97563 1.21456 1.01165 0.92975 1.07387 1.18947 0.87177 0.90242 0.97351 1.86025 1.14530 1.39388 1.84860 1.23311 0.81168 1.01078 1.01947 1.19249 0.90365 0.97292 1.05393 1.20587 1.01764 0.91531 1.01838 0.96041 0.93235 0.93943 0.94006 0.91292 0.92713 0.76135 0.85992 0.85584 0.84915 0.83296 0.83269 0.91313 0.92407 0.86456 0.89636 0.92210 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.38 2.24 44.24 0.10 14.48 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.90 11.30 21.45 0.24 -52.66 16 9 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 N -0.71 -28.59 5.02 -446.11 -2.24 -30.83 16 14 C 0.50 19.34 5.59 87.66 0.49 19.83 16 15 O -0.58 -27.73 13.17 -3.02 -0.04 -27.77 16 16 C -0.10 -2.66 5.15 29.10 0.15 -2.51 16 17 C -0.04 -1.11 4.37 -19.88 -0.09 -1.20 16 18 C -0.16 -4.17 9.68 22.28 0.22 -3.95 16 19 C -0.09 -2.14 10.04 22.26 0.22 -1.92 16 20 C -0.21 -5.02 9.04 22.37 0.20 -4.82 16 21 C 0.11 3.03 6.66 22.51 0.15 3.18 16 22 O -0.33 -8.49 9.55 -92.36 -0.88 -9.37 16 23 C 0.02 0.30 9.81 113.37 1.11 1.41 16 24 C -0.12 -3.71 5.89 -19.77 -0.12 -3.82 16 25 C -0.10 -2.85 8.99 71.24 0.64 -2.21 16 26 H 0.02 1.07 7.85 -2.39 -0.02 1.05 16 27 H 0.05 2.18 4.83 -2.39 -0.01 2.17 16 28 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.40 13.53 8.54 -92.71 -0.79 12.74 16 33 H 0.12 2.72 7.01 -2.39 -0.02 2.71 16 34 H 0.13 2.70 8.05 -2.39 -0.02 2.68 16 35 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.15 2.59 6.30 -2.91 -0.02 2.58 16 38 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 39 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 40 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 1.76 7.54 -2.39 -0.02 1.74 16 43 H 0.05 1.66 5.33 -2.39 -0.01 1.65 16 Total: -1.00 -70.79 344.36 3.87 -66.92 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.23 Total: 29.44 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 4.53 Total: -19.85 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.00 Total: -83.49 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.92 Total: -37.15 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -70.79 3.87 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186476968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.766 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds