Wall clock time and date at job start Tue Mar 31 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46834 * 2 1 4 4 C 1.42905 * 113.99761 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47198 * 179.97438 * 4 3 2 6 6 C 1.38364 * 119.85383 * 269.72048 * 5 4 3 7 7 C 1.37956 * 120.14261 * 180.27116 * 6 5 4 8 8 C 1.39576 * 119.85607 * 0.02562 * 7 6 5 9 9 C 1.47848 * 120.14271 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99946 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99889 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99681 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47104 * 35.00048 * 12 11 9 14 14 C 1.50697 * 109.47070 * 154.99786 * 12 11 9 15 15 H 1.08005 * 120.00372 * 0.02562 * 14 12 11 16 16 C 1.37878 * 120.00180 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99688 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00156 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47204 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47311 * 119.99892 * 18 16 14 21 21 H 1.48500 * 109.46893 * 239.99873 * 18 16 14 22 22 C 1.52997 * 109.47284 * 275.00029 * 12 11 9 23 23 C 1.53002 * 109.47137 * 64.99942 * 22 12 11 24 24 C 1.39575 * 119.71175 * 359.97438 * 8 7 6 25 25 C 1.37955 * 119.85210 * 0.02562 * 24 8 7 26 26 H 1.08994 * 109.47602 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47344 * 300.00295 * 1 2 3 28 28 H 1.08998 * 109.47266 * 59.99759 * 1 2 3 29 29 H 1.09003 * 109.46996 * 240.00371 * 2 1 3 30 30 H 1.08991 * 109.47034 * 119.99376 * 2 1 3 31 31 H 1.09003 * 109.47338 * 59.99388 * 4 3 2 32 32 H 1.09002 * 109.46544 * 299.99522 * 4 3 2 33 33 H 1.07993 * 119.92279 * 0.25878 * 6 5 4 34 34 H 1.08000 * 120.06785 * 179.97438 * 7 6 5 35 35 H 0.96994 * 120.00403 * 0.02562 * 11 9 8 36 36 H 0.97003 * 119.99882 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47309 * 185.00152 * 22 12 11 38 38 H 1.09001 * 109.46930 * 305.00110 * 22 12 11 39 39 H 1.09001 * 109.47073 * 60.00256 * 23 22 12 40 40 H 1.09005 * 109.47115 * 179.97438 * 23 22 12 41 41 H 1.08994 * 109.47193 * 300.00281 * 23 22 12 42 42 H 1.08000 * 120.07334 * 179.97438 * 24 8 7 43 43 H 1.08004 * 119.92775 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 6 4.0022 3.5798 -1.2014 7 6 4.3634 4.9112 -1.2089 8 6 4.5450 5.5887 -0.0022 9 6 4.9326 7.0154 -0.0028 10 8 5.0905 7.6028 1.0496 11 7 5.1110 7.6648 -1.1703 12 6 5.4956 9.0784 -1.1708 13 1 6.1588 9.2748 -0.3284 14 6 6.2085 9.4045 -2.4578 15 1 6.3595 8.6358 -3.2013 16 6 6.6670 10.6845 -2.6868 17 7 6.4826 11.6207 -1.7817 18 14 7.5500 11.0889 -4.2825 19 1 7.6290 9.8701 -5.1271 20 1 6.8017 12.1467 -5.0080 21 1 8.9216 11.5712 -3.9806 22 6 4.2428 9.9479 -1.0472 23 6 3.5873 9.7073 0.3142 24 6 4.3590 4.9134 1.2051 25 6 3.9978 3.5820 1.1986 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.8333 0.9767 -0.8908 32 1 3.8339 0.9766 0.8892 33 1 3.8620 3.0542 -2.1344 34 1 4.5062 5.4279 -2.1465 35 1 4.9846 7.1962 -2.0101 36 1 6.8048 12.5213 -1.9429 37 1 4.5194 10.9984 -1.1367 38 1 3.5407 9.6882 -1.8395 39 1 4.2894 9.9670 1.1065 40 1 2.6950 10.3272 0.4025 41 1 3.3108 8.6569 0.4038 42 1 4.4983 5.4318 2.1422 43 1 3.8540 3.0581 2.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187110861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:42 Heat of formation + Delta-G solvation = -70.730442 kcal Electronic energy + Delta-G solvation = -22640.300471 eV Core-core repulsion = 19264.077408 eV Total energy + Delta-G solvation = -3376.223063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90268 -38.64941 -37.59169 -35.05088 -32.90563 -32.29678 -31.25435 -30.84954 -30.35814 -27.25091 -26.12974 -23.21607 -23.08833 -22.57246 -22.12219 -20.22786 -19.31372 -17.89594 -16.95678 -16.46275 -16.20992 -15.71238 -15.45638 -14.88593 -14.56191 -14.46884 -14.17890 -13.62963 -13.50081 -13.26551 -13.10367 -12.78721 -12.66996 -12.48948 -11.87393 -11.71056 -11.68230 -11.48055 -11.26947 -11.21891 -11.00481 -10.94098 -10.83692 -10.30497 -10.17039 -9.91148 -9.61889 -9.09364 -9.02377 -8.93283 -8.77766 -8.50001 -7.81401 -6.12278 -4.21646 0.93082 1.43540 3.12158 3.23728 3.31651 3.34178 3.68971 4.06325 4.23023 4.37807 4.62710 4.65817 4.73827 4.91773 4.94555 5.03232 5.07343 5.12776 5.19132 5.37197 5.41324 5.43503 5.57449 5.66094 5.79837 5.86565 6.02818 6.35030 6.41778 6.48351 6.49033 6.52028 6.68747 6.88275 6.93033 7.07133 7.21986 7.37797 7.44937 7.62877 7.74211 7.90694 8.18468 8.65832 8.77643 9.11506 9.45606 10.93122 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.002979 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.119406 B = 9397.376211 C = 9859.604086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.104 3.896 5 C -0.082 4.082 6 C -0.106 4.106 7 C -0.092 4.092 8 C -0.112 4.112 9 C 0.540 3.460 10 O -0.544 6.544 11 N -0.701 5.701 12 C 0.269 3.731 13 H 0.051 0.949 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.881 5.881 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.069 4.069 25 C -0.108 4.108 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.388 0.612 36 H 0.264 0.736 37 H 0.100 0.900 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.023 0.977 41 H 0.038 0.962 42 H 0.137 0.863 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 -21.237 1.853 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.302 6.302 4 C 0.028 3.972 5 C -0.082 4.082 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.116 4.116 9 C 0.325 3.675 10 O -0.424 6.424 11 N -0.348 5.348 12 C 0.168 3.832 13 H 0.068 0.932 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.519 5.519 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.166 4.166 23 C -0.195 4.195 24 C -0.088 4.088 25 C -0.126 4.126 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.221 0.779 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.155 0.845 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.756 -20.406 2.614 21.986 hybrid contribution 0.555 -0.190 -1.309 1.435 sum -7.201 -20.596 1.305 21.858 Atomic orbital electron populations 1.21745 0.93689 1.02151 1.03343 1.22473 0.95712 0.83892 1.00002 1.88011 1.20498 1.26255 1.95400 1.21317 0.81780 0.93206 1.00877 1.19665 1.00139 0.94716 0.93711 1.20929 0.99685 0.94374 0.97457 1.21388 0.97598 0.94404 0.97675 1.20427 1.01998 0.95073 0.94057 1.18175 0.78599 0.85610 0.85089 1.90734 1.52129 1.68172 1.31354 1.46468 1.67298 1.14462 1.06589 1.18834 0.92607 0.73708 0.98096 0.93153 1.21258 1.37538 0.95792 1.02606 0.92048 1.24889 0.95747 0.96036 0.97028 1.69908 1.45504 1.02605 1.33871 0.86399 0.79339 0.78401 0.82997 1.19748 1.20870 1.20890 1.21934 0.96631 1.04459 0.93595 1.21845 0.98744 0.99410 0.99527 1.21281 0.95667 0.93624 0.98185 1.20974 0.99823 0.94386 0.97446 0.91158 0.91778 0.91758 0.93410 0.93427 0.92377 0.92392 0.85658 0.85187 0.77901 0.92607 0.88216 0.95003 0.93121 0.95808 0.94269 0.84536 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.38 -4.12 10.33 -35.23 -0.36 -4.49 16 4 C 0.10 0.98 6.06 36.00 0.22 1.20 16 5 C -0.08 -0.97 5.52 -104.53 -0.58 -1.54 16 6 C -0.11 -1.28 9.68 -39.64 -0.38 -1.66 16 7 C -0.09 -1.28 9.54 -39.19 -0.37 -1.65 16 8 C -0.11 -1.87 5.87 -104.97 -0.62 -2.48 16 9 C 0.54 11.15 6.34 -12.33 -0.08 11.07 16 10 O -0.54 -12.95 13.48 5.32 0.07 -12.88 16 11 N -0.70 -14.82 4.97 -55.88 -0.28 -15.10 16 12 C 0.27 6.82 2.24 -69.08 -0.15 6.66 16 13 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 14 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 16 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 17 N -0.88 -24.68 11.29 55.43 0.63 -24.05 16 18 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 23 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 24 C -0.07 -1.03 9.60 -39.19 -0.38 -1.41 16 25 C -0.11 -1.34 9.68 -39.64 -0.38 -1.73 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.63 6.41 -52.49 -0.34 1.30 16 35 H 0.39 7.13 6.57 -40.82 -0.27 6.87 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 42 H 0.14 2.06 7.65 -52.49 -0.40 1.66 16 43 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -30.86 353.34 -8.55 -39.42 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.59 Total: 6.54 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.32 Total: -10.32 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.35 Total: -39.15 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.29 Total: -17.36 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.86 -8.55 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187110861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.314 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds