Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.46834 * 2 1 4 4 C 1.42905 * 113.99761 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47198 * 179.97438 * 4 3 2 6 6 C 1.38364 * 119.85383 * 269.72048 * 5 4 3 7 7 C 1.37956 * 120.14261 * 180.27116 * 6 5 4 8 8 C 1.39576 * 119.85607 * 0.02562 * 7 6 5 9 9 C 1.47848 * 120.14271 * 179.97438 * 8 7 6 10 10 O 1.21548 * 119.99946 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99889 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99681 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47104 * 35.00048 * 12 11 9 14 14 C 1.50697 * 109.47070 * 154.99786 * 12 11 9 15 15 H 1.08005 * 120.00372 * 0.02562 * 14 12 11 16 16 C 1.37878 * 120.00180 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99688 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00156 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47204 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47311 * 119.99892 * 18 16 14 21 21 H 1.48500 * 109.46893 * 239.99873 * 18 16 14 22 22 C 1.52997 * 109.47284 * 275.00029 * 12 11 9 23 23 C 1.53002 * 109.47137 * 64.99942 * 22 12 11 24 24 C 1.39575 * 119.71175 * 359.97438 * 8 7 6 25 25 C 1.37955 * 119.85210 * 0.02562 * 24 8 7 26 26 H 1.08994 * 109.47602 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47344 * 300.00295 * 1 2 3 28 28 H 1.08998 * 109.47266 * 59.99759 * 1 2 3 29 29 H 1.09003 * 109.46996 * 240.00371 * 2 1 3 30 30 H 1.08991 * 109.47034 * 119.99376 * 2 1 3 31 31 H 1.09003 * 109.47338 * 59.99388 * 4 3 2 32 32 H 1.09002 * 109.46544 * 299.99522 * 4 3 2 33 33 H 1.07993 * 119.92279 * 0.25878 * 6 5 4 34 34 H 1.08000 * 120.06785 * 179.97438 * 7 6 5 35 35 H 0.96994 * 120.00403 * 0.02562 * 11 9 8 36 36 H 0.97003 * 119.99882 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47309 * 185.00152 * 22 12 11 38 38 H 1.09001 * 109.46930 * 305.00110 * 22 12 11 39 39 H 1.09001 * 109.47073 * 60.00256 * 23 22 12 40 40 H 1.09005 * 109.47115 * 179.97438 * 23 22 12 41 41 H 1.08994 * 109.47193 * 300.00281 * 23 22 12 42 42 H 1.08000 * 120.07334 * 179.97438 * 24 8 7 43 43 H 1.08004 * 119.92775 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 6 4.0022 3.5798 -1.2014 7 6 4.3634 4.9112 -1.2089 8 6 4.5450 5.5887 -0.0022 9 6 4.9326 7.0154 -0.0028 10 8 5.0905 7.6028 1.0496 11 7 5.1110 7.6648 -1.1703 12 6 5.4956 9.0784 -1.1708 13 1 6.1588 9.2748 -0.3284 14 6 6.2085 9.4045 -2.4578 15 1 6.3595 8.6358 -3.2013 16 6 6.6670 10.6845 -2.6868 17 7 6.4826 11.6207 -1.7817 18 14 7.5500 11.0889 -4.2825 19 1 7.6290 9.8701 -5.1271 20 1 6.8017 12.1467 -5.0080 21 1 8.9216 11.5712 -3.9806 22 6 4.2428 9.9479 -1.0472 23 6 3.5873 9.7073 0.3142 24 6 4.3590 4.9134 1.2051 25 6 3.9978 3.5820 1.1986 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.8333 0.9767 -0.8908 32 1 3.8339 0.9766 0.8892 33 1 3.8620 3.0542 -2.1344 34 1 4.5062 5.4279 -2.1465 35 1 4.9846 7.1962 -2.0101 36 1 6.8048 12.5213 -1.9429 37 1 4.5194 10.9984 -1.1367 38 1 3.5407 9.6882 -1.8395 39 1 4.2894 9.9670 1.1065 40 1 2.6950 10.3272 0.4025 41 1 3.3108 8.6569 0.4038 42 1 4.4983 5.4318 2.1422 43 1 3.8540 3.0581 2.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187110861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -89.408748 kcal Electronic energy + Delta-G solvation = -22641.110423 eV Core-core repulsion = 19264.077408 eV Total energy + Delta-G solvation = -3377.033015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23881 -39.83481 -38.51868 -36.93994 -34.46671 -33.66381 -32.72728 -31.87761 -31.46242 -29.06124 -27.27491 -25.07631 -23.62771 -23.61785 -23.46283 -21.83360 -21.05979 -19.45548 -17.93840 -17.58649 -17.44562 -16.95454 -16.75008 -16.34584 -16.28089 -15.61024 -15.60209 -14.89967 -14.62164 -14.44806 -14.27290 -14.00042 -13.89912 -13.62570 -13.44392 -13.18882 -13.08244 -12.88087 -12.71065 -12.44328 -12.31626 -12.15820 -12.07196 -11.98195 -11.94926 -11.61042 -11.05812 -10.78788 -10.54225 -10.53145 -9.96865 -9.94321 -9.60991 -8.16751 -6.34284 -0.20128 0.40521 1.44201 1.45191 1.57173 1.90591 2.34281 2.59331 2.72052 3.11939 3.14196 3.76964 3.79676 3.96680 4.04064 4.20934 4.29210 4.35147 4.39009 4.46977 4.54029 4.54962 4.55993 4.65328 4.73259 4.81296 4.90438 5.03254 5.05141 5.07687 5.22545 5.28040 5.31431 5.40079 5.42574 5.51477 5.53914 5.59814 5.77085 5.87706 5.93013 6.14833 6.29155 6.72910 6.93774 7.31615 7.51462 8.89063 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.002979 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.119406 B = 9397.376211 C = 9859.604086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.103 3.897 5 C -0.074 4.074 6 C -0.103 4.103 7 C -0.091 4.091 8 C -0.140 4.140 9 C 0.538 3.462 10 O -0.586 6.586 11 N -0.698 5.698 12 C 0.277 3.723 13 H -0.001 1.001 14 C -0.547 4.547 15 H 0.072 0.928 16 C 0.015 3.985 17 N -0.915 5.915 18 Si 0.972 3.028 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.284 1.284 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.080 4.080 25 C -0.106 4.106 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.402 0.598 36 H 0.265 0.735 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.026 0.974 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.124 0.876 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -24.250 0.171 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.329 6.329 4 C 0.028 3.972 5 C -0.075 4.075 6 C -0.121 4.121 7 C -0.110 4.110 8 C -0.143 4.143 9 C 0.326 3.674 10 O -0.468 6.468 11 N -0.347 5.347 12 C 0.174 3.826 13 H 0.017 0.983 14 C -0.586 4.586 15 H 0.090 0.910 16 C -0.185 4.185 17 N -0.553 5.553 18 Si 0.797 3.203 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.210 1.210 22 C -0.160 4.160 23 C -0.181 4.181 24 C -0.099 4.099 25 C -0.123 4.123 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.238 0.762 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.142 0.858 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.448 -23.463 0.914 24.954 hybrid contribution 0.724 0.619 -0.725 1.197 sum -7.725 -22.843 0.189 24.115 Atomic orbital electron populations 1.21783 0.93507 1.03268 1.02441 1.22675 0.95925 0.82695 1.01308 1.87966 1.21002 1.28276 1.95681 1.21408 0.81604 0.91358 1.02876 1.20082 0.98001 0.96164 0.93210 1.21274 0.98324 0.93475 0.98993 1.21523 0.97192 0.95359 0.96902 1.20124 1.05467 0.92723 0.96019 1.18817 0.77267 0.87276 0.84051 1.90701 1.53858 1.69614 1.32645 1.46213 1.67603 1.13098 1.07761 1.18432 0.92082 0.76153 0.95970 0.98295 1.21582 1.37727 0.96296 1.02952 0.90985 1.25789 0.96434 0.95904 1.00396 1.70058 1.46389 1.02978 1.35873 0.85297 0.77697 0.78492 0.78847 1.18364 1.20391 1.21032 1.21788 0.96628 1.02787 0.94755 1.21681 0.98851 0.99851 0.97740 1.21302 0.96499 0.94904 0.97213 1.21223 0.98805 0.93188 0.99133 0.89073 0.92712 0.92613 0.92005 0.92140 0.90281 0.90593 0.82626 0.84150 0.76203 0.92558 0.90728 0.94014 0.95444 0.93443 0.94160 0.85792 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.05 0.59 6.66 71.98 0.48 1.07 16 3 O -0.41 -7.52 10.33 -148.98 -1.54 -9.05 16 4 C 0.10 1.54 6.06 71.23 0.43 1.97 16 5 C -0.07 -1.52 5.52 -19.81 -0.11 -1.63 16 6 C -0.10 -2.16 9.68 22.23 0.22 -1.95 16 7 C -0.09 -2.40 9.54 22.53 0.21 -2.18 16 8 C -0.14 -4.68 5.87 -20.09 -0.12 -4.80 16 9 C 0.54 23.04 6.34 86.79 0.55 23.59 16 10 O -0.59 -29.50 13.48 -3.87 -0.05 -29.56 16 11 N -0.70 -30.28 4.97 -448.99 -2.23 -32.51 16 12 C 0.28 14.57 2.24 44.24 0.10 14.67 16 13 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 14 C -0.55 -29.25 8.73 25.60 0.22 -29.03 16 15 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 16 C 0.01 0.80 5.29 84.65 0.45 1.25 16 17 N -0.91 -52.70 11.29 21.45 0.24 -52.46 16 18 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 23 C -0.12 -5.83 8.51 71.98 0.61 -5.22 16 24 C -0.08 -2.41 9.60 22.53 0.22 -2.19 16 25 C -0.11 -2.42 9.68 22.23 0.22 -2.21 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 33 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.14 3.29 6.41 -2.91 -0.02 3.27 16 35 H 0.40 14.79 6.57 -92.71 -0.61 14.18 16 36 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.07 4.19 5.95 -2.39 -0.01 4.17 16 38 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.03 1.37 7.84 -2.39 -0.02 1.36 16 40 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.04 1.86 5.64 -2.39 -0.01 1.84 16 42 H 0.12 3.93 7.65 -2.91 -0.02 3.91 16 43 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -69.37 353.34 3.22 -66.15 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.39 Total: 26.76 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 4.39 Total: -13.57 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.99 Total: -84.97 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.59 Total: -38.61 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -69.37 3.22 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187110861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.256 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds