Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 18 18 C 1.53006 * 109.47158 * 59.99940 * 16 14 13 19 19 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 20 20 C 1.38164 * 120.03304 * 299.72510 * 19 16 14 21 21 C 1.38243 * 120.05449 * 179.76834 * 20 19 16 22 22 C 1.38284 * 120.11563 * 0.50828 * 21 20 19 23 23 C 1.38120 * 120.05320 * 359.74494 * 22 21 20 24 24 C 1.38715 * 120.02518 * 120.00207 * 19 16 14 25 25 O 1.35906 * 120.05570 * 359.97438 * 24 19 16 26 26 C 1.42900 * 116.99616 * 180.02562 * 25 24 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.09008 * 109.46960 * 60.00219 * 18 16 14 35 35 H 1.09003 * 109.46975 * 179.97438 * 18 16 14 36 36 H 1.08997 * 109.47407 * 300.00349 * 18 16 14 37 37 H 1.07999 * 119.96718 * 0.02562 * 20 19 16 38 38 H 1.08008 * 119.94091 * 180.25777 * 21 20 19 39 39 H 1.07998 * 119.97287 * 179.77076 * 22 21 20 40 40 H 1.08002 * 120.03129 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.47058 * 60.00658 * 26 25 24 42 42 H 1.09009 * 109.46559 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.47483 * 299.99866 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.0673 2.6129 3.4685 18 6 1.0069 4.4820 2.9540 19 6 -1.3610 3.8862 2.5231 20 6 -1.6444 4.8318 1.5564 21 6 -2.9272 5.3319 1.4320 22 6 -3.9275 4.8951 2.2810 23 6 -3.6482 3.9538 3.2524 24 6 -2.3627 3.4464 3.3760 25 8 -2.0854 2.5201 4.3310 26 6 -3.1657 2.1133 5.1733 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 0.9759 5.2067 2.1404 35 1 0.7181 4.9692 3.8853 36 1 2.0178 4.0856 3.0491 37 1 -0.8639 5.1775 0.8948 38 1 -3.1475 6.0680 0.6730 39 1 -4.9280 5.2900 2.1842 40 1 -4.4298 3.6126 3.9151 41 1 -3.9574 1.6776 4.5638 42 1 -2.8091 1.3731 5.8896 43 1 -3.5545 2.9792 5.7092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187690312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = -61.524219 kcal Electronic energy + Delta-G solvation = -23910.934912 eV Core-core repulsion = 20535.111061 eV Total energy + Delta-G solvation = -3375.823851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39653 -38.90056 -37.25530 -35.07165 -33.84278 -32.25720 -30.82823 -30.01339 -29.30275 -27.24738 -26.85408 -24.48332 -23.03822 -22.03742 -21.67480 -19.81435 -19.10193 -17.97767 -17.05914 -16.36619 -15.78475 -15.63320 -15.35541 -15.04911 -14.55246 -14.40478 -14.11421 -13.67844 -13.32376 -13.18023 -12.80451 -12.60716 -12.16604 -12.11279 -11.87547 -11.83069 -11.64873 -11.35823 -11.20261 -11.08332 -10.96447 -10.85400 -10.71994 -10.59245 -10.27435 -10.09330 -9.56120 -9.00486 -8.80899 -8.67037 -8.44264 -8.02462 -7.71027 -6.08039 -4.17308 1.46662 1.58041 3.27612 3.27884 3.33075 3.34153 3.56076 3.84304 4.26208 4.46538 4.74537 4.87908 4.98911 5.05587 5.13227 5.22930 5.29533 5.37616 5.42371 5.43901 5.57482 5.68423 5.83859 5.93443 6.06966 6.14294 6.29718 6.43290 6.45691 6.53484 6.58777 6.72458 6.73803 6.91329 7.11797 7.26831 7.44143 7.44512 7.55674 7.67647 7.80810 7.96597 8.24024 8.77054 8.84336 9.25600 9.50666 10.97166 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024197 B = 0.003983 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.878243 B = 7027.402484 C = 7138.340859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.507 3.493 15 O -0.542 6.542 16 C -0.072 4.072 17 H 0.103 0.897 18 C -0.137 4.137 19 C -0.083 4.083 20 C -0.046 4.046 21 C -0.158 4.158 22 C -0.087 4.087 23 C -0.214 4.214 24 C 0.129 3.871 25 O -0.315 6.315 26 C 0.029 3.971 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 7.069 13.398 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.421 6.421 16 C -0.093 4.093 17 H 0.121 0.879 18 C -0.194 4.194 19 C -0.085 4.085 20 C -0.064 4.064 21 C -0.177 4.177 22 C -0.105 4.105 23 C -0.232 4.232 24 C 0.084 3.916 25 O -0.229 6.229 26 C -0.066 4.066 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.577 6.826 12.556 18.392 hybrid contribution 0.922 -0.157 0.300 0.982 sum -10.655 6.670 12.856 17.980 Atomic orbital electron populations 1.21829 0.98356 0.97875 1.01286 1.21927 0.92591 0.99947 1.02123 1.18740 0.94008 0.89112 0.81158 0.93408 1.21213 0.90829 1.38930 1.06193 0.92191 1.24883 0.98476 0.94864 0.95426 1.69894 1.35138 1.37660 1.09320 0.86537 0.85038 0.78273 0.77405 1.20196 1.21185 1.20221 1.46459 1.14642 1.56138 1.18388 1.20167 0.82657 0.79309 0.88700 1.90669 1.51244 1.59728 1.40409 1.20196 0.92292 0.98537 0.98315 0.87900 1.21760 0.98392 0.97359 1.01917 1.18732 0.93565 0.99295 0.96866 1.20822 0.96843 0.93843 0.94866 1.21005 0.93235 1.02586 1.00825 1.20842 0.98906 0.96190 0.94585 1.21079 0.95513 1.03148 1.03487 1.18780 0.93132 0.89917 0.89799 1.86060 1.37132 1.55684 1.44018 1.23011 0.90162 0.99930 0.93508 0.93240 0.94184 0.96062 0.95148 0.88420 0.92580 0.78096 0.92045 0.92050 0.91549 0.85465 0.86127 0.86250 0.85874 0.92797 0.88421 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.16 5.45 -26.74 -0.15 -3.31 16 3 C 0.27 6.89 2.24 -69.08 -0.15 6.74 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.91 11.30 55.43 0.63 -24.28 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.71 -14.85 4.91 -54.94 -0.27 -15.12 16 14 C 0.51 10.22 5.60 -10.99 -0.06 10.15 16 15 O -0.54 -12.73 12.27 5.56 0.07 -12.67 16 16 C -0.07 -1.14 2.87 -92.92 -0.27 -1.41 16 17 H 0.10 1.58 6.99 -51.93 -0.36 1.22 16 18 C -0.14 -1.80 8.90 37.16 0.33 -1.47 16 19 C -0.08 -1.33 4.40 -104.47 -0.46 -1.79 16 20 C -0.05 -0.70 7.94 -39.61 -0.31 -1.02 16 21 C -0.16 -2.11 10.04 -39.56 -0.40 -2.51 16 22 C -0.09 -1.06 10.04 -39.61 -0.40 -1.45 16 23 C -0.21 -2.69 9.04 -39.43 -0.36 -3.04 16 24 C 0.13 1.89 6.66 -39.21 -0.26 1.62 16 25 O -0.32 -4.29 9.26 -19.44 -0.18 -4.47 16 26 C 0.03 0.26 9.81 101.05 0.99 1.25 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.04 0.92 5.64 -51.93 -0.29 0.63 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.39 7.13 7.96 -40.82 -0.32 6.80 16 34 H 0.06 0.82 7.37 -51.92 -0.38 0.44 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 37 H 0.13 2.00 7.51 -52.49 -0.39 1.60 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 41 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 43 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -31.20 344.90 -7.62 -38.81 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.47 Total: 8.67 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.57 Total: -11.80 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.36 Total: -39.40 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.11 Total: -17.14 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.20 -7.62 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187690312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.713 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds