Wall clock time and date at job start Tue Mar 31 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.47466 * 299.99891 * 16 14 13 18 18 C 1.53006 * 109.47158 * 59.99940 * 16 14 13 19 19 C 1.50699 * 109.47030 * 179.97438 * 16 14 13 20 20 C 1.38164 * 120.03304 * 299.72510 * 19 16 14 21 21 C 1.38243 * 120.05449 * 179.76834 * 20 19 16 22 22 C 1.38284 * 120.11563 * 0.50828 * 21 20 19 23 23 C 1.38120 * 120.05320 * 359.74494 * 22 21 20 24 24 C 1.38715 * 120.02518 * 120.00207 * 19 16 14 25 25 O 1.35906 * 120.05570 * 359.97438 * 24 19 16 26 26 C 1.42900 * 116.99616 * 180.02562 * 25 24 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.09008 * 109.46960 * 60.00219 * 18 16 14 35 35 H 1.09003 * 109.46975 * 179.97438 * 18 16 14 36 36 H 1.08997 * 109.47407 * 300.00349 * 18 16 14 37 37 H 1.07999 * 119.96718 * 0.02562 * 20 19 16 38 38 H 1.08008 * 119.94091 * 180.25777 * 21 20 19 39 39 H 1.07998 * 119.97287 * 179.77076 * 22 21 20 40 40 H 1.08002 * 120.03129 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.47058 * 60.00658 * 26 25 24 42 42 H 1.09009 * 109.46559 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.47483 * 299.99866 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.0673 2.6129 3.4685 18 6 1.0069 4.4820 2.9540 19 6 -1.3610 3.8862 2.5231 20 6 -1.6444 4.8318 1.5564 21 6 -2.9272 5.3319 1.4320 22 6 -3.9275 4.8951 2.2810 23 6 -3.6482 3.9538 3.2524 24 6 -2.3627 3.4464 3.3760 25 8 -2.0854 2.5201 4.3310 26 6 -3.1657 2.1133 5.1733 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 0.9759 5.2067 2.1404 35 1 0.7181 4.9692 3.8853 36 1 2.0178 4.0856 3.0491 37 1 -0.8639 5.1775 0.8948 38 1 -3.1475 6.0680 0.6730 39 1 -4.9280 5.2900 2.1842 40 1 -4.4298 3.6126 3.9151 41 1 -3.9574 1.6776 4.5638 42 1 -2.8091 1.3731 5.8896 43 1 -3.5545 2.9792 5.7092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187690312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:38 Heat of formation + Delta-G solvation = -80.492291 kcal Electronic energy + Delta-G solvation = -23911.757429 eV Core-core repulsion = 20535.111061 eV Total energy + Delta-G solvation = -3376.646368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54422 -40.37358 -38.29554 -36.90989 -35.17130 -34.18785 -32.65994 -31.01724 -30.43322 -28.84511 -27.99889 -25.79559 -24.89124 -23.20380 -22.89864 -21.56412 -20.79644 -19.02830 -18.71399 -17.59899 -17.29179 -17.00436 -16.53745 -16.49505 -16.17826 -15.79114 -15.30040 -14.98423 -14.72550 -14.55676 -14.28443 -14.04849 -13.57878 -13.45358 -13.19718 -13.08719 -13.00169 -12.89255 -12.75633 -12.68902 -12.62089 -12.16996 -12.06741 -11.97359 -11.94187 -11.59182 -11.56526 -11.04289 -10.55971 -10.40357 -9.73512 -9.56050 -9.05224 -8.13956 -6.31382 0.41949 0.54595 1.45575 1.47476 1.55130 1.94079 2.38072 2.42503 2.64353 2.98686 3.15334 3.65705 3.87536 4.05475 4.18361 4.26132 4.30977 4.40691 4.43639 4.48348 4.51825 4.56197 4.56582 4.75403 4.76061 4.80832 4.85557 4.96912 5.07479 5.11048 5.23696 5.26647 5.41217 5.44714 5.55242 5.57683 5.66808 5.67385 5.81291 5.91043 5.96954 6.18927 6.50091 6.76981 7.06610 7.36087 7.66122 8.91169 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024197 B = 0.003983 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.878243 B = 7027.402484 C = 7138.340859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.706 5.706 14 C 0.505 3.495 15 O -0.579 6.579 16 C -0.058 4.058 17 H 0.111 0.889 18 C -0.132 4.132 19 C -0.112 4.112 20 C -0.066 4.066 21 C -0.168 4.168 22 C -0.083 4.083 23 C -0.213 4.213 24 C 0.118 3.882 25 O -0.335 6.335 26 C 0.019 3.981 27 H 0.024 0.976 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.735 7.422 15.647 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.355 5.355 14 C 0.291 3.709 15 O -0.459 6.459 16 C -0.080 4.080 17 H 0.129 0.871 18 C -0.189 4.189 19 C -0.113 4.113 20 C -0.084 4.084 21 C -0.186 4.186 22 C -0.101 4.101 23 C -0.232 4.232 24 C 0.072 3.928 25 O -0.249 6.249 26 C -0.075 4.075 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.072 7.191 14.853 20.446 hybrid contribution 0.958 -0.258 -0.380 1.062 sum -11.114 6.933 14.473 19.521 Atomic orbital electron populations 1.21648 0.97176 0.98877 1.00071 1.21781 0.93529 0.99460 1.01148 1.18315 0.93552 0.88959 0.81469 0.98527 1.21562 0.91454 1.38906 1.06679 0.91055 1.25767 1.03263 0.94370 0.95007 1.70052 1.37109 1.38411 1.09837 0.85439 0.79169 0.78457 0.77510 1.18942 1.21254 1.19621 1.46244 1.15572 1.56214 1.17437 1.20967 0.81622 0.78390 0.89883 1.90645 1.52201 1.60833 1.42241 1.20097 0.93411 0.99093 0.95374 0.87122 1.21756 0.98101 0.96349 1.02692 1.18825 0.93867 1.00365 0.98210 1.20838 0.97624 0.94811 0.95169 1.21283 0.92745 1.02949 1.01632 1.21261 1.00014 0.95347 0.93443 1.21463 0.95400 1.02564 1.03731 1.18937 0.93571 0.90248 0.90002 1.86022 1.39277 1.55396 1.44213 1.23329 0.89534 1.01233 0.93408 0.95671 0.94084 0.93804 0.94237 0.91015 0.92665 0.76441 0.92865 0.89748 0.90795 0.87182 0.84440 0.82875 0.82939 0.92282 0.86578 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.51 71.98 0.61 -5.10 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.96 16 3 C 0.28 14.71 2.24 44.24 0.10 14.81 16 4 H 0.00 -0.20 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -29.33 8.73 25.60 0.22 -29.11 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -53.06 11.30 21.45 0.24 -52.82 16 9 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 N -0.71 -30.09 4.91 -446.11 -2.19 -32.28 16 14 C 0.50 20.81 5.60 87.66 0.49 21.30 16 15 O -0.58 -28.37 12.27 -3.02 -0.04 -28.40 16 16 C -0.06 -1.85 2.87 -12.28 -0.04 -1.89 16 17 H 0.11 3.31 6.99 -2.39 -0.02 3.29 16 18 C -0.13 -3.37 8.90 71.98 0.64 -2.73 16 19 C -0.11 -3.53 4.40 -19.77 -0.09 -3.61 16 20 C -0.07 -2.07 7.94 22.25 0.18 -1.90 16 21 C -0.17 -4.33 10.04 22.28 0.22 -4.10 16 22 C -0.08 -1.80 10.04 22.25 0.22 -1.58 16 23 C -0.21 -4.82 9.04 22.37 0.20 -4.61 16 24 C 0.12 3.29 6.66 22.51 0.15 3.44 16 25 O -0.34 -8.53 9.26 -92.49 -0.86 -9.39 16 26 C 0.02 0.29 9.81 113.37 1.11 1.40 16 27 H 0.02 1.27 7.85 -2.39 -0.02 1.25 16 28 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 29 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 4.06 5.95 -2.39 -0.01 4.05 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.40 14.67 7.96 -92.71 -0.74 13.93 16 34 H 0.05 1.44 7.37 -2.38 -0.02 1.42 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.75 7.56 -2.39 -0.02 1.73 16 37 H 0.11 3.68 7.51 -2.91 -0.02 3.66 16 38 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.15 2.44 6.30 -2.91 -0.02 2.42 16 41 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 42 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 Total: -1.00 -69.58 344.90 4.10 -65.48 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.27 Total: 31.33 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.65 Total: -18.33 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -1.95 Total: -85.10 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.89 Total: -37.79 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -69.58 4.10 -65.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187690312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.015 kcal (2) G-P(sol) polarization free energy of solvation -69.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds