Wall clock time and date at job start Tue Mar 31 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 H 1.08994 * 109.46725 * 305.00102 * 3 2 1 5 5 C 1.50698 * 109.47190 * 184.99989 * 3 2 1 6 6 H 1.07997 * 119.99676 * 240.00251 * 5 3 2 7 7 C 1.37873 * 119.99856 * 59.99733 * 5 3 2 8 8 N 1.31510 * 120.00480 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99743 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47033 * 90.00539 * 9 7 5 11 11 H 1.48496 * 109.46945 * 210.00350 * 9 7 5 12 12 H 1.48497 * 109.47009 * 330.00398 * 9 7 5 13 13 N 1.46505 * 109.46727 * 64.99734 * 3 2 1 14 14 C 1.34764 * 120.00426 * 274.99809 * 13 3 2 15 15 O 1.21593 * 120.00114 * 0.02562 * 14 13 3 16 16 C 1.47604 * 120.00595 * 180.02562 * 14 13 3 17 17 C 1.39760 * 120.08071 * 353.79359 * 16 14 13 18 18 C 1.37680 * 119.90651 * 180.02562 * 17 16 14 19 19 C 1.39021 * 120.09195 * 359.97365 * 18 17 16 20 20 O 1.35710 * 119.90972 * 180.02562 * 19 18 17 21 21 C 1.42896 * 117.00633 * 359.97438 * 20 19 18 22 22 C 1.38976 * 120.17235 * 0.04810 * 19 18 17 23 23 C 1.50703 * 119.95169 * 179.97438 * 22 19 18 24 24 C 1.37719 * 120.08857 * 359.67530 * 22 19 18 25 25 C 1.50707 * 120.04493 * 180.32071 * 24 22 19 26 26 H 1.09001 * 109.47046 * 59.99636 * 1 2 3 27 27 H 1.09005 * 109.47011 * 300.00037 * 1 2 3 28 28 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47046 * 120.00364 * 2 1 3 30 30 H 1.08996 * 109.46872 * 240.00042 * 2 1 3 31 31 H 0.97000 * 120.00625 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99577 * 95.00324 * 13 3 2 33 33 H 1.07998 * 120.04528 * 0.02562 * 17 16 14 34 34 H 1.08002 * 119.95404 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.46650 * 59.99865 * 21 20 19 36 36 H 1.08995 * 109.47656 * 179.97438 * 21 20 19 37 37 H 1.09005 * 109.47216 * 300.00645 * 21 20 19 38 38 H 1.09000 * 109.46917 * 89.99637 * 23 22 19 39 39 H 1.09003 * 109.46871 * 209.99651 * 23 22 19 40 40 H 1.09000 * 109.46954 * 329.99869 * 23 22 19 41 41 H 1.08991 * 109.46865 * 263.71998 * 25 24 22 42 42 H 1.09005 * 109.46797 * 23.72227 * 25 24 22 43 43 H 1.08996 * 109.46862 * 143.71179 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8812 -1.3817 10 1 6.5549 -0.3502 -0.7602 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0737 -0.6901 13 7 1.6524 2.0975 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3415 2.6319 0.4321 16 6 0.0449 3.3247 2.6280 17 6 0.8814 3.2516 3.7452 18 6 0.5135 3.8685 4.9199 19 6 -0.6880 4.5638 4.9954 20 8 -1.0468 5.1709 6.1549 21 6 -0.1429 5.0537 7.2554 22 6 -1.5228 4.6384 3.8868 23 6 -2.8243 5.3929 3.9743 24 6 -1.1592 4.0289 2.7065 25 6 -2.0618 4.1165 1.5028 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 -2.9502 32 1 2.2719 2.1231 1.9978 33 1 1.8151 2.7120 3.6872 34 1 1.1591 3.8121 5.7838 35 1 0.8192 5.4877 6.9830 36 1 -0.5490 5.5832 8.1172 37 1 -0.0089 4.0011 7.5051 38 1 -2.6607 6.4334 3.6938 39 1 -3.5509 4.9439 3.2971 40 1 -3.2028 5.3472 4.9955 41 1 -2.6821 3.2219 1.4480 42 1 -2.6996 4.9961 1.5902 43 1 -1.4565 4.1950 0.5998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188090850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:33 Heat of formation + Delta-G solvation = -59.615581 kcal Electronic energy + Delta-G solvation = -23638.524080 eV Core-core repulsion = 20262.782994 eV Total energy + Delta-G solvation = -3375.741086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53948 -39.09296 -37.25613 -35.04850 -33.62351 -32.21854 -31.33956 -30.68244 -27.95142 -27.68238 -26.54312 -26.02911 -23.39921 -22.53061 -20.82539 -20.14727 -19.23370 -17.71617 -17.40344 -16.64313 -15.97043 -15.77124 -15.23831 -14.65070 -14.53476 -14.16901 -14.04605 -13.72852 -13.26596 -13.07063 -12.68581 -12.65750 -12.45549 -12.18915 -12.08814 -11.93335 -11.84909 -11.53093 -11.42751 -11.22054 -10.95628 -10.91482 -10.78718 -10.67778 -10.27998 -10.14810 -9.59244 -9.03497 -8.79575 -8.58147 -8.48852 -8.14344 -7.72078 -6.11487 -4.20815 1.13515 1.36012 3.10899 3.24334 3.31055 3.31929 3.33749 4.11357 4.19743 4.39554 4.67621 4.76027 4.91578 4.93561 5.18137 5.19694 5.20693 5.30428 5.30682 5.41146 5.66553 5.69179 5.83266 5.94285 6.09947 6.15840 6.28568 6.32474 6.41554 6.43757 6.50080 6.68608 6.73063 6.85944 7.08118 7.23009 7.28336 7.39797 7.49677 7.63962 7.76246 7.92544 8.19916 8.70089 8.79563 9.17047 9.46779 10.93784 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.003983 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.183304 B = 7028.110154 C = 7849.013752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.546 3.454 15 O -0.541 6.541 16 C -0.161 4.161 17 C -0.049 4.049 18 C -0.221 4.221 19 C 0.143 3.857 20 O -0.314 6.314 21 C 0.026 3.974 22 C -0.134 4.134 23 C -0.102 4.102 24 C 0.010 3.990 25 C -0.121 4.121 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.561 7.755 15.835 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.332 3.668 15 O -0.422 6.422 16 C -0.165 4.165 17 C -0.068 4.068 18 C -0.240 4.240 19 C 0.097 3.903 20 O -0.227 6.227 21 C -0.069 4.069 22 C -0.135 4.135 23 C -0.158 4.158 24 C 0.009 3.991 25 C -0.177 4.177 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.236 7.727 14.993 18.771 hybrid contribution 1.796 -0.247 0.576 1.903 sum -6.440 7.480 15.569 18.434 Atomic orbital electron populations 1.21843 0.98299 0.97992 1.01319 1.21933 0.92681 0.99777 1.02203 1.18791 0.94142 0.89175 0.80955 0.93160 1.21234 0.90769 1.38991 1.06292 0.92174 1.24872 0.98531 0.94824 0.95374 1.69891 1.35083 1.37612 1.09320 0.86473 0.84982 0.78411 0.77386 1.20573 1.21068 1.19889 1.46451 1.14486 1.55710 1.18491 1.18004 0.82837 0.79202 0.86718 1.90683 1.51281 1.59789 1.40448 1.20068 0.96660 1.04346 0.95387 1.21126 0.98297 0.95846 0.91539 1.21063 0.97866 1.05130 0.99933 1.18977 0.93009 0.92550 0.85734 1.85999 1.46952 1.70780 1.18971 1.23064 0.93905 1.02109 0.87799 1.19008 0.98258 1.04936 0.91258 1.20602 0.93477 0.99165 1.02604 1.19718 0.93286 0.91922 0.94190 1.21137 0.98610 1.01355 0.96603 0.93091 0.94176 0.95966 0.95138 0.88310 0.92576 0.78115 0.85202 0.85259 0.92546 0.88372 0.92572 0.91579 0.91242 0.91465 0.90570 0.92542 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.90 20.54 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -14.76 4.97 -55.95 -0.28 -15.04 16 14 C 0.55 11.08 6.26 -12.44 -0.08 11.00 16 15 O -0.54 -12.22 10.47 5.28 0.06 -12.16 16 16 C -0.16 -2.73 5.87 -104.96 -0.62 -3.34 16 17 C -0.05 -0.70 9.52 -39.22 -0.37 -1.08 16 18 C -0.22 -2.76 9.01 -39.49 -0.36 -3.12 16 19 C 0.14 1.87 6.67 -39.02 -0.26 1.61 16 20 O -0.31 -3.55 9.52 -18.83 -0.18 -3.73 16 21 C 0.03 0.19 9.81 101.05 0.99 1.18 16 22 C -0.13 -1.85 5.89 -104.54 -0.62 -2.46 16 23 C -0.10 -1.13 8.95 36.01 0.32 -0.81 16 24 C 0.01 0.16 5.91 -104.26 -0.62 -0.46 16 25 C -0.12 -1.82 8.07 36.01 0.29 -1.53 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 7.11 6.60 -40.82 -0.27 6.84 16 33 H 0.13 1.65 6.44 -52.49 -0.34 1.32 16 34 H 0.13 1.25 6.28 -52.49 -0.33 0.92 16 35 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.71 6.58 -51.93 -0.34 0.37 16 40 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.69 6.35 -51.93 -0.33 0.36 16 43 H 0.10 1.81 5.86 -51.93 -0.30 1.50 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -30.05 337.99 -7.55 -37.60 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -6.16 Total: 7.73 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.69 Total: -11.04 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.35 Total: -39.00 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.12 Total: -15.90 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.05 -7.55 -37.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188090850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.018 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds