Wall clock time and date at job start Tue Mar 31 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 H 1.08994 * 109.46725 * 305.00102 * 3 2 1 5 5 C 1.50698 * 109.47190 * 184.99989 * 3 2 1 6 6 H 1.07997 * 119.99676 * 240.00251 * 5 3 2 7 7 C 1.37873 * 119.99856 * 59.99733 * 5 3 2 8 8 N 1.31510 * 120.00480 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99743 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47033 * 90.00539 * 9 7 5 11 11 H 1.48496 * 109.46945 * 210.00350 * 9 7 5 12 12 H 1.48497 * 109.47009 * 330.00398 * 9 7 5 13 13 N 1.46505 * 109.46727 * 64.99734 * 3 2 1 14 14 C 1.34764 * 120.00426 * 274.99809 * 13 3 2 15 15 O 1.21593 * 120.00114 * 0.02562 * 14 13 3 16 16 C 1.47604 * 120.00595 * 180.02562 * 14 13 3 17 17 C 1.39760 * 120.08071 * 353.79359 * 16 14 13 18 18 C 1.37680 * 119.90651 * 180.02562 * 17 16 14 19 19 C 1.39021 * 120.09195 * 359.97365 * 18 17 16 20 20 O 1.35710 * 119.90972 * 180.02562 * 19 18 17 21 21 C 1.42896 * 117.00633 * 359.97438 * 20 19 18 22 22 C 1.38976 * 120.17235 * 0.04810 * 19 18 17 23 23 C 1.50703 * 119.95169 * 179.97438 * 22 19 18 24 24 C 1.37719 * 120.08857 * 359.67530 * 22 19 18 25 25 C 1.50707 * 120.04493 * 180.32071 * 24 22 19 26 26 H 1.09001 * 109.47046 * 59.99636 * 1 2 3 27 27 H 1.09005 * 109.47011 * 300.00037 * 1 2 3 28 28 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47046 * 120.00364 * 2 1 3 30 30 H 1.08996 * 109.46872 * 240.00042 * 2 1 3 31 31 H 0.97000 * 120.00625 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99577 * 95.00324 * 13 3 2 33 33 H 1.07998 * 120.04528 * 0.02562 * 17 16 14 34 34 H 1.08002 * 119.95404 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.46650 * 59.99865 * 21 20 19 36 36 H 1.08995 * 109.47656 * 179.97438 * 21 20 19 37 37 H 1.09005 * 109.47216 * 300.00645 * 21 20 19 38 38 H 1.09000 * 109.46917 * 89.99637 * 23 22 19 39 39 H 1.09003 * 109.46871 * 209.99651 * 23 22 19 40 40 H 1.09000 * 109.46954 * 329.99869 * 23 22 19 41 41 H 1.08991 * 109.46865 * 263.71998 * 25 24 22 42 42 H 1.09005 * 109.46797 * 23.72227 * 25 24 22 43 43 H 1.08996 * 109.46862 * 143.71179 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8812 -1.3817 10 1 6.5549 -0.3502 -0.7602 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0737 -0.6901 13 7 1.6524 2.0975 1.2519 14 6 0.4352 2.6644 1.3670 15 8 -0.3415 2.6319 0.4321 16 6 0.0449 3.3247 2.6280 17 6 0.8814 3.2516 3.7452 18 6 0.5135 3.8685 4.9199 19 6 -0.6880 4.5638 4.9954 20 8 -1.0468 5.1709 6.1549 21 6 -0.1429 5.0537 7.2554 22 6 -1.5228 4.6384 3.8868 23 6 -2.8243 5.3929 3.9743 24 6 -1.1592 4.0289 2.7065 25 6 -2.0618 4.1165 1.5028 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0605 -2.9502 32 1 2.2719 2.1231 1.9978 33 1 1.8151 2.7120 3.6872 34 1 1.1591 3.8121 5.7838 35 1 0.8192 5.4877 6.9830 36 1 -0.5490 5.5832 8.1172 37 1 -0.0089 4.0011 7.5051 38 1 -2.6607 6.4334 3.6938 39 1 -3.5509 4.9439 3.2971 40 1 -3.2028 5.3472 4.9955 41 1 -2.6821 3.2219 1.4480 42 1 -2.6996 4.9961 1.5902 43 1 -1.4565 4.1950 0.5998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188090850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:32 Heat of formation + Delta-G solvation = -77.497415 kcal Electronic energy + Delta-G solvation = -23639.299495 eV Core-core repulsion = 20262.782994 eV Total energy + Delta-G solvation = -3376.516501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66191 -40.45292 -38.42079 -36.85561 -34.88449 -33.99160 -32.83251 -32.09844 -29.37971 -28.51008 -28.11966 -27.00212 -25.15773 -24.01112 -22.00183 -21.71289 -20.93817 -19.05168 -18.62649 -17.83691 -17.46839 -16.95922 -16.76258 -16.29500 -16.07040 -15.43204 -15.17200 -14.86891 -14.57464 -14.54183 -14.09462 -13.88564 -13.68030 -13.56705 -13.35168 -13.17036 -13.14499 -12.99573 -12.86201 -12.77327 -12.63646 -12.37073 -12.14531 -12.04186 -11.86674 -11.67348 -11.55525 -11.03529 -10.54910 -10.37084 -9.72296 -9.55453 -9.11534 -8.15143 -6.32498 -0.03354 0.29814 1.44842 1.45645 1.55959 2.01472 2.29829 2.37042 2.67396 2.85785 3.14370 3.71175 3.80971 3.96589 4.09114 4.22189 4.36533 4.43628 4.44091 4.50753 4.58671 4.66378 4.76232 4.77925 4.80778 4.82323 4.87916 4.88862 5.08107 5.19085 5.23355 5.25248 5.26848 5.33587 5.45805 5.55212 5.60705 5.67689 5.75725 5.81701 5.96165 6.18465 6.37611 6.75260 7.02523 7.34530 7.60541 8.90191 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.003983 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.183304 B = 7028.110154 C = 7849.013752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.703 5.703 14 C 0.542 3.458 15 O -0.573 6.573 16 C -0.190 4.190 17 C -0.049 4.049 18 C -0.215 4.215 19 C 0.150 3.850 20 O -0.320 6.320 21 C 0.014 3.986 22 C -0.142 4.142 23 C -0.100 4.100 24 C -0.003 4.003 25 C -0.114 4.114 26 H 0.028 0.972 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 8.577 18.988 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.352 5.352 14 C 0.332 3.668 15 O -0.455 6.455 16 C -0.193 4.193 17 C -0.068 4.068 18 C -0.233 4.233 19 C 0.103 3.897 20 O -0.233 6.233 21 C -0.080 4.080 22 C -0.143 4.143 23 C -0.156 4.156 24 C -0.004 4.004 25 C -0.170 4.170 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.160 0.840 34 H 0.180 0.820 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.599 8.564 18.196 21.499 hybrid contribution 1.530 -0.415 -0.272 1.608 sum -6.069 8.149 17.924 20.604 Atomic orbital electron populations 1.21669 0.96977 0.99025 1.00293 1.21780 0.93765 0.99155 1.01191 1.18366 0.93601 0.89120 0.81218 0.98192 1.21573 0.91450 1.38991 1.06743 0.91221 1.25748 1.03254 0.94355 0.94968 1.70043 1.37029 1.38317 1.09829 0.85385 0.79188 0.78837 0.77158 1.19630 1.21240 1.18998 1.46199 1.15357 1.56067 1.17589 1.18574 0.82000 0.78531 0.87738 1.90672 1.52037 1.60800 1.42008 1.19846 0.98473 1.06425 0.94556 1.21276 0.98281 0.95910 0.91313 1.21371 0.98015 1.03765 1.00139 1.19121 0.92690 0.91630 0.86242 1.86009 1.48136 1.70098 1.19038 1.23431 0.94033 1.03421 0.87110 1.19249 0.99490 1.04721 0.90839 1.20643 0.92298 0.99327 1.03366 1.19796 0.93067 0.92498 0.95064 1.21006 0.98405 1.02263 0.95358 0.95312 0.93954 0.93738 0.94272 0.90914 0.92597 0.76581 0.83986 0.81957 0.91543 0.85935 0.91505 0.90629 0.90658 0.90587 0.91254 0.89863 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.60 2.24 44.24 0.10 14.70 16 4 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 5 C -0.55 -29.34 8.73 25.60 0.22 -29.11 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.22 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.70 -30.22 4.97 -449.21 -2.23 -32.45 16 14 C 0.54 22.79 6.26 86.72 0.54 23.34 16 15 O -0.57 -27.37 10.47 -4.01 -0.04 -27.42 16 16 C -0.19 -6.42 5.87 -20.08 -0.12 -6.54 16 17 C -0.05 -1.32 9.52 22.51 0.21 -1.11 16 18 C -0.21 -4.70 9.01 22.33 0.20 -4.50 16 19 C 0.15 3.49 6.67 22.63 0.15 3.64 16 20 O -0.32 -6.10 9.52 -90.31 -0.86 -6.96 16 21 C 0.01 0.15 9.81 113.37 1.11 1.26 16 22 C -0.14 -3.68 5.89 -19.81 -0.12 -3.79 16 23 C -0.10 -2.00 8.95 71.24 0.64 -1.36 16 24 C 0.00 -0.10 5.91 -19.63 -0.12 -0.21 16 25 C -0.11 -3.52 8.07 71.24 0.57 -2.95 16 26 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 27 H 0.04 1.91 5.64 -2.38 -0.01 1.89 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 4.05 5.95 -2.39 -0.01 4.04 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.40 14.70 6.60 -92.71 -0.61 14.09 16 33 H 0.14 3.36 6.44 -2.91 -0.02 3.34 16 34 H 0.16 2.41 6.28 -2.91 -0.02 2.39 16 35 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 36 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.59 7.65 -2.38 -0.02 0.57 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.40 6.58 -2.39 -0.02 1.38 16 40 H 0.08 1.38 7.52 -2.39 -0.02 1.37 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 42 H 0.08 2.02 6.35 -2.38 -0.02 2.00 16 43 H 0.07 2.65 5.86 -2.39 -0.01 2.64 16 Total: -1.00 -67.38 337.99 4.19 -63.19 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.42 Total: 27.83 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.63 Total: -16.16 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.99 Total: -84.67 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.90 Total: -34.38 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.38 4.19 -63.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188090850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.307 kcal (2) G-P(sol) polarization free energy of solvation -67.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds