Wall clock time and date at job start Tue Mar 31 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.52998 * 109.47355 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46817 * 65.00094 * 4 3 2 6 6 C 1.34776 * 120.00470 * 269.99760 * 5 4 3 7 7 O 1.21554 * 119.99710 * 42.06634 * 6 5 4 8 8 C 1.47885 * 120.00325 * 222.05541 * 6 5 4 9 9 C 1.39920 * 120.02811 * 336.70301 * 8 6 5 10 10 C 1.38321 * 120.35747 * 179.73792 * 9 8 6 11 11 C 1.37753 * 120.41348 * 0.56033 * 10 9 8 12 12 C 1.40751 * 120.03909 * 359.69240 * 11 10 9 13 13 C 1.41434 * 120.17832 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00052 * 33.34443 * 13 12 11 15 15 C 1.39931 * 120.00175 * 213.35047 * 13 12 11 16 16 N 1.30831 * 120.00136 * 6.21367 * 15 13 12 17 17 Si 1.86805 * 120.00055 * 186.22202 * 15 13 12 18 18 H 1.48497 * 109.47163 * 59.99786 * 17 15 13 19 19 H 1.48498 * 109.46807 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46931 * 299.99496 * 17 15 13 21 21 C 1.38993 * 120.02393 * 156.97265 * 8 6 5 22 22 C 1.46503 * 119.99717 * 90.00443 * 5 4 3 23 23 C 1.53003 * 109.47459 * 86.96649 * 22 5 4 24 24 C 1.53002 * 109.47269 * 206.96535 * 22 5 4 25 25 H 1.08997 * 109.46868 * 299.99680 * 1 2 3 26 26 H 1.09001 * 109.47128 * 59.99475 * 1 2 3 27 27 H 1.09002 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46602 * 60.00739 * 3 2 1 29 29 H 1.08996 * 109.47828 * 300.00334 * 3 2 1 30 30 H 1.08993 * 109.47683 * 185.00487 * 4 3 2 31 31 H 1.09002 * 109.47062 * 305.01073 * 4 3 2 32 32 H 1.08004 * 119.81651 * 359.97438 * 9 8 6 33 33 H 1.08005 * 119.79232 * 180.27887 * 10 9 8 34 34 H 1.08001 * 119.97891 * 179.71954 * 11 10 9 35 35 H 0.97001 * 120.00350 * 180.02562 * 16 15 13 36 36 H 1.08007 * 120.20273 * 359.95837 * 21 8 6 37 37 H 1.08998 * 109.47144 * 326.96578 * 22 5 4 38 38 H 1.08999 * 109.47155 * 60.63594 * 23 22 5 39 39 H 1.08995 * 109.47609 * 180.64144 * 23 22 5 40 40 H 1.09001 * 109.46679 * 300.64158 * 23 22 5 41 41 H 1.08999 * 109.46881 * 101.82757 * 24 22 5 42 42 H 1.08995 * 109.47271 * 221.82919 * 24 22 5 43 43 H 1.09000 * 109.46781 * 341.82869 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0959 -0.7759 -1.3333 7 8 3.2473 -1.4930 -0.8403 8 6 5.2592 -1.3737 -2.0235 9 6 5.9585 -0.6354 -2.9846 10 6 7.0508 -1.1858 -3.6305 11 6 7.4558 -2.4709 -3.3437 12 6 6.7616 -3.2308 -2.3837 13 6 7.1752 -4.5502 -2.0866 14 1 8.2229 -4.8097 -2.1266 15 6 6.2272 -5.5196 -1.7409 16 7 4.9509 -5.2404 -1.8101 17 14 6.7838 -7.2125 -1.1805 18 1 7.6218 -7.0797 0.0382 19 1 5.5951 -8.0482 -0.8746 20 1 7.5769 -7.8550 -2.2591 21 6 5.6553 -2.6715 -1.7222 22 6 4.2883 1.4000 -2.4130 23 6 5.7493 1.8486 -2.3415 24 6 4.0640 0.5954 -3.6949 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8465 -0.8899 30 1 3.9785 2.1765 0.0903 31 1 3.8508 0.5684 0.8426 32 1 5.6460 0.3712 -3.2205 33 1 7.5867 -0.6061 -4.3675 34 1 8.3069 -2.8953 -3.8555 35 1 4.2936 -5.9122 -1.5701 36 1 5.1162 -3.2464 -0.9837 37 1 3.6391 2.2756 -2.4153 38 1 6.3990 0.9734 -2.3506 39 1 5.9781 2.4798 -3.2001 40 1 5.9118 2.4120 -1.4227 41 1 3.1141 0.8852 -4.1442 42 1 4.8739 0.7961 -4.3962 43 1 4.0441 -0.4682 -3.4574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188675210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:17 Heat of formation + Delta-G solvation = 25.087098 kcal Electronic energy + Delta-G solvation = -24465.480037 eV Core-core repulsion = 21093.411935 eV Total energy + Delta-G solvation = -3372.068102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40383 -37.65208 -36.80762 -36.31843 -33.70851 -32.56874 -29.95232 -29.44213 -28.68780 -27.03198 -26.00848 -25.31634 -23.16073 -22.30060 -21.29004 -20.52767 -18.20103 -17.09485 -16.70250 -16.22144 -15.81286 -15.39302 -15.27627 -15.00198 -14.67220 -14.06710 -13.62529 -13.33191 -13.11409 -12.86123 -12.53671 -12.49220 -12.33460 -12.15304 -11.87214 -11.70508 -11.51096 -11.22523 -11.10997 -11.06892 -10.95225 -10.84205 -10.71156 -10.22550 -10.00369 -9.78796 -9.37911 -9.15257 -8.96315 -8.77951 -7.95802 -7.47399 -7.22056 -6.59831 -4.32971 2.27953 2.90228 3.13632 3.15805 3.19984 3.53257 3.76374 4.02059 4.07673 4.73205 5.01851 5.15755 5.20271 5.30365 5.40544 5.41795 5.46702 5.52192 5.53907 5.65361 5.67584 5.84320 5.88681 5.97837 6.01172 6.09335 6.15104 6.25695 6.45068 6.61523 6.75016 6.78448 7.09798 7.11912 7.25087 7.33380 7.49121 7.51049 7.77447 7.87372 7.99115 8.15952 8.28170 8.60405 8.93104 8.93362 9.01819 10.34751 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.005532 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.449554 B = 5060.536873 C = 6394.224367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.040 3.960 4 C 0.132 3.868 5 N -0.647 5.647 6 C 0.575 3.425 7 O -0.485 6.485 8 C -0.141 4.141 9 C -0.262 4.262 10 C -0.117 4.117 11 C -0.202 4.202 12 C 0.097 3.903 13 C -0.470 4.470 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.800 5.800 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.083 4.083 22 C 0.152 3.848 23 C -0.219 4.219 24 C -0.178 4.178 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.174 0.826 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.282 0.718 36 H 0.129 0.871 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 13.442 1.009 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C -0.039 4.039 4 C 0.009 3.991 5 N -0.385 5.385 6 C 0.367 3.633 7 O -0.356 6.356 8 C -0.145 4.145 9 C -0.280 4.280 10 C -0.135 4.135 11 C -0.222 4.222 12 C 0.094 3.906 13 C -0.501 4.501 14 H 0.094 0.906 15 C -0.146 4.146 16 N -0.426 5.426 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.103 4.103 22 C 0.048 3.952 23 C -0.276 4.276 24 C -0.235 4.235 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.190 0.810 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.452 12.708 1.328 13.530 hybrid contribution -0.050 -0.458 0.139 0.481 sum -4.502 12.249 1.467 13.133 Atomic orbital electron populations 1.22670 0.82740 1.02415 0.98653 1.88336 1.17874 1.25579 1.94948 1.23034 0.95579 0.86113 0.99136 1.21281 0.91630 0.98571 0.87657 1.47535 1.73054 1.05793 1.12164 1.18725 0.84794 0.81006 0.78813 1.90760 1.39218 1.60872 1.44778 1.19816 0.97179 0.96179 1.01276 1.23061 0.99273 1.02950 1.02711 1.20516 0.97402 0.95673 0.99890 1.21235 1.03777 0.95863 1.01284 1.17572 0.91047 0.92738 0.89193 1.19457 0.94660 0.93738 1.42210 0.90561 1.25877 0.94537 1.00964 0.93191 1.69747 1.01231 1.35743 1.35871 0.86317 0.78897 0.81213 0.79917 1.19025 1.20384 1.19168 1.21651 0.98047 0.90985 0.99581 1.20893 0.95627 0.92960 0.85689 1.23407 0.98429 1.04427 1.01361 1.22950 1.00493 1.03633 0.96399 0.95055 0.94966 0.89924 0.93684 0.93883 0.89685 0.90403 0.80959 0.89126 0.88906 0.90731 0.85351 0.91041 0.86223 0.92209 0.93020 0.93835 0.90670 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.35 -6.15 8.25 -57.19 -0.47 -6.62 16 3 C 0.04 0.55 6.28 37.16 0.23 0.78 16 4 C 0.13 1.88 5.98 -4.04 -0.02 1.85 16 5 N -0.65 -11.05 2.42 -167.20 -0.40 -11.46 16 6 C 0.58 12.74 5.62 -12.31 -0.07 12.67 16 7 O -0.48 -12.39 14.68 -16.64 -0.24 -12.64 16 8 C -0.14 -3.31 5.11 -105.04 -0.54 -3.85 16 9 C -0.26 -5.34 4.54 -38.92 -0.18 -5.51 16 10 C -0.12 -2.45 10.01 -39.73 -0.40 -2.85 16 11 C -0.20 -4.83 9.78 -38.81 -0.38 -5.21 16 12 C 0.10 2.59 5.51 -106.87 -0.59 2.00 16 13 C -0.47 -12.68 9.05 -37.73 -0.34 -13.02 16 14 H 0.08 1.96 7.85 -52.48 -0.41 1.54 16 15 C 0.07 1.85 5.30 -17.34 -0.09 1.76 16 16 N -0.80 -22.01 10.93 55.55 0.61 -21.40 16 17 Si 0.91 19.51 29.56 -169.99 -5.03 14.49 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 C -0.08 -2.22 8.16 -38.44 -0.31 -2.54 16 22 C 0.15 2.14 3.13 -67.93 -0.21 1.93 16 23 C -0.22 -2.82 8.57 37.16 0.32 -2.50 16 24 C -0.18 -2.74 7.91 37.16 0.29 -2.45 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 32 H 0.17 2.90 0.66 -99.18 -0.07 2.83 16 33 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.28 7.21 8.30 -40.82 -0.34 6.88 16 36 H 0.13 3.78 6.17 -52.48 -0.32 3.45 16 37 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.12 1.88 4.14 -53.60 -0.22 1.66 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.04 6.64 -51.93 -0.34 0.70 16 43 H 0.09 1.87 4.01 -51.93 -0.21 1.66 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -31.35 336.33 -7.84 -39.18 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.19 Total: 8.77 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -1.17 Total: -15.39 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.20 Total: -32.86 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.72 Total: -19.26 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.35 -7.84 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.272 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds