Wall clock time and date at job start Tue Mar 31 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.52998 * 109.47355 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46817 * 65.00094 * 4 3 2 6 6 C 1.34776 * 120.00470 * 269.99760 * 5 4 3 7 7 O 1.21554 * 119.99710 * 42.06634 * 6 5 4 8 8 C 1.47885 * 120.00325 * 222.05541 * 6 5 4 9 9 C 1.39920 * 120.02811 * 336.70301 * 8 6 5 10 10 C 1.38321 * 120.35747 * 179.73792 * 9 8 6 11 11 C 1.37753 * 120.41348 * 0.56033 * 10 9 8 12 12 C 1.40751 * 120.03909 * 359.69240 * 11 10 9 13 13 C 1.41434 * 120.17832 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00052 * 33.34443 * 13 12 11 15 15 C 1.39931 * 120.00175 * 213.35047 * 13 12 11 16 16 N 1.30831 * 120.00136 * 6.21367 * 15 13 12 17 17 Si 1.86805 * 120.00055 * 186.22202 * 15 13 12 18 18 H 1.48497 * 109.47163 * 59.99786 * 17 15 13 19 19 H 1.48498 * 109.46807 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46931 * 299.99496 * 17 15 13 21 21 C 1.38993 * 120.02393 * 156.97265 * 8 6 5 22 22 C 1.46503 * 119.99717 * 90.00443 * 5 4 3 23 23 C 1.53003 * 109.47459 * 86.96649 * 22 5 4 24 24 C 1.53002 * 109.47269 * 206.96535 * 22 5 4 25 25 H 1.08997 * 109.46868 * 299.99680 * 1 2 3 26 26 H 1.09001 * 109.47128 * 59.99475 * 1 2 3 27 27 H 1.09002 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46602 * 60.00739 * 3 2 1 29 29 H 1.08996 * 109.47828 * 300.00334 * 3 2 1 30 30 H 1.08993 * 109.47683 * 185.00487 * 4 3 2 31 31 H 1.09002 * 109.47062 * 305.01073 * 4 3 2 32 32 H 1.08004 * 119.81651 * 359.97438 * 9 8 6 33 33 H 1.08005 * 119.79232 * 180.27887 * 10 9 8 34 34 H 1.08001 * 119.97891 * 179.71954 * 11 10 9 35 35 H 0.97001 * 120.00350 * 180.02562 * 16 15 13 36 36 H 1.08007 * 120.20273 * 359.95837 * 21 8 6 37 37 H 1.08998 * 109.47144 * 326.96578 * 22 5 4 38 38 H 1.08999 * 109.47155 * 60.63594 * 23 22 5 39 39 H 1.08995 * 109.47609 * 180.64144 * 23 22 5 40 40 H 1.09001 * 109.46679 * 300.64158 * 23 22 5 41 41 H 1.08999 * 109.46881 * 101.82757 * 24 22 5 42 42 H 1.08995 * 109.47271 * 221.82919 * 24 22 5 43 43 H 1.09000 * 109.46781 * 341.82869 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0959 -0.7759 -1.3333 7 8 3.2473 -1.4930 -0.8403 8 6 5.2592 -1.3737 -2.0235 9 6 5.9585 -0.6354 -2.9846 10 6 7.0508 -1.1858 -3.6305 11 6 7.4558 -2.4709 -3.3437 12 6 6.7616 -3.2308 -2.3837 13 6 7.1752 -4.5502 -2.0866 14 1 8.2229 -4.8097 -2.1266 15 6 6.2272 -5.5196 -1.7409 16 7 4.9509 -5.2404 -1.8101 17 14 6.7838 -7.2125 -1.1805 18 1 7.6218 -7.0797 0.0382 19 1 5.5951 -8.0482 -0.8746 20 1 7.5769 -7.8550 -2.2591 21 6 5.6553 -2.6715 -1.7222 22 6 4.2883 1.4000 -2.4130 23 6 5.7493 1.8486 -2.3415 24 6 4.0640 0.5954 -3.6949 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6887 1.8465 -0.8899 30 1 3.9785 2.1765 0.0903 31 1 3.8508 0.5684 0.8426 32 1 5.6460 0.3712 -3.2205 33 1 7.5867 -0.6061 -4.3675 34 1 8.3069 -2.8953 -3.8555 35 1 4.2936 -5.9122 -1.5701 36 1 5.1162 -3.2464 -0.9837 37 1 3.6391 2.2756 -2.4153 38 1 6.3990 0.9734 -2.3506 39 1 5.9781 2.4798 -3.2001 40 1 5.9118 2.4120 -1.4227 41 1 3.1141 0.8852 -4.1442 42 1 4.8739 0.7961 -4.3962 43 1 4.0441 -0.4682 -3.4574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188675210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:16 Heat of formation + Delta-G solvation = 6.238449 kcal Electronic energy + Delta-G solvation = -24466.297376 eV Core-core repulsion = 21093.411935 eV Total energy + Delta-G solvation = -3372.885441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91551 -39.05132 -38.38526 -37.85921 -35.48289 -33.99805 -31.69618 -31.21204 -30.03444 -28.19335 -27.22396 -27.07287 -24.65662 -23.59728 -22.89543 -22.23053 -19.89451 -18.71776 -18.15393 -17.46925 -17.27340 -16.93399 -16.63670 -16.54771 -16.08176 -15.53666 -15.22566 -14.91293 -14.61658 -14.30513 -14.22146 -14.06245 -13.57138 -13.36484 -13.30899 -13.07943 -12.93559 -12.81777 -12.68736 -12.41620 -12.33455 -12.06061 -12.01061 -11.90510 -11.86981 -11.55629 -11.05227 -10.56421 -10.48233 -10.39911 -9.46384 -9.20440 -9.06949 -8.52288 -6.35660 0.46133 1.07649 1.34703 1.47603 1.47890 2.00474 2.21760 2.22400 2.84371 3.05355 3.69027 3.82830 4.00465 4.08292 4.18788 4.26267 4.30597 4.43644 4.50202 4.52066 4.55153 4.59516 4.67038 4.78270 4.82859 4.88110 4.91782 5.00084 5.06161 5.11418 5.18580 5.26498 5.35549 5.41534 5.58217 5.60891 5.93970 5.98968 6.03120 6.10535 6.37115 6.45637 6.56862 6.72060 6.95582 7.01416 7.36631 8.43300 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.005532 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.449554 B = 5060.536873 C = 6394.224367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.037 3.963 4 C 0.124 3.876 5 N -0.639 5.639 6 C 0.575 3.425 7 O -0.534 6.534 8 C -0.153 4.153 9 C -0.229 4.229 10 C -0.119 4.119 11 C -0.207 4.207 12 C 0.059 3.941 13 C -0.508 4.508 14 H 0.078 0.922 15 C 0.023 3.977 16 N -0.846 5.846 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.255 1.255 21 C -0.120 4.120 22 C 0.144 3.856 23 C -0.216 4.216 24 C -0.186 4.186 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.135 0.865 31 H 0.052 0.948 32 H 0.221 0.779 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.280 0.720 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 17.445 -0.086 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C -0.041 4.041 4 C 0.002 3.998 5 N -0.377 5.377 6 C 0.366 3.634 7 O -0.410 6.410 8 C -0.157 4.157 9 C -0.245 4.245 10 C -0.137 4.137 11 C -0.226 4.226 12 C 0.058 3.942 13 C -0.539 4.539 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.474 5.474 17 Si 0.806 3.194 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.179 1.179 21 C -0.140 4.140 22 C 0.042 3.958 23 C -0.273 4.273 24 C -0.242 4.242 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.071 0.929 32 H 0.236 0.764 33 H 0.156 0.844 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.890 16.777 0.221 17.223 hybrid contribution -0.247 -1.383 0.405 1.462 sum -4.137 15.394 0.625 15.953 Atomic orbital electron populations 1.22756 0.81252 1.02238 1.00416 1.88295 1.19867 1.28314 1.95342 1.23194 0.94659 0.84989 1.01236 1.21639 0.92782 1.00003 0.85362 1.47551 1.71958 1.04097 1.14046 1.18644 0.83938 0.82924 0.77867 1.90738 1.40668 1.62640 1.46933 1.20177 0.98004 0.95397 1.02119 1.23830 0.97174 1.04154 0.99392 1.21041 0.97480 0.94846 1.00355 1.21527 1.03569 0.97056 1.00476 1.17894 0.92086 0.93544 0.90708 1.19739 0.94978 0.94724 1.44504 0.90393 1.26798 0.94269 1.05009 0.92760 1.69902 1.02484 1.36975 1.37996 0.85218 0.78499 0.76042 0.79682 1.18430 1.19952 1.17873 1.21412 0.99346 0.92715 1.00556 1.21286 0.97707 0.93316 0.83531 1.23266 0.96165 1.03661 1.04222 1.22954 1.02712 1.00679 0.97890 0.92560 0.93722 0.91283 0.90694 0.92352 0.84748 0.92942 0.76410 0.84365 0.87858 0.90953 0.89483 0.86761 0.89470 0.88594 0.91081 0.91918 0.88428 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -14.04 8.25 -127.98 -1.06 -15.09 16 3 C 0.04 0.91 6.28 71.98 0.45 1.36 16 4 C 0.12 3.22 5.98 86.38 0.52 3.74 16 5 N -0.64 -20.60 2.42 -801.16 -1.94 -22.54 16 6 C 0.58 26.20 5.62 86.80 0.49 26.69 16 7 O -0.53 -29.15 14.68 17.11 0.25 -28.90 16 8 C -0.15 -7.46 5.11 -20.13 -0.10 -7.56 16 9 C -0.23 -8.95 4.54 22.70 0.10 -8.85 16 10 C -0.12 -4.77 10.01 22.17 0.22 -4.55 16 11 C -0.21 -9.99 9.78 22.77 0.22 -9.77 16 12 C 0.06 3.38 5.51 -21.32 -0.12 3.26 16 13 C -0.51 -29.20 9.05 23.47 0.21 -28.99 16 14 H 0.08 4.23 7.85 -2.91 -0.02 4.20 16 15 C 0.02 1.29 5.30 85.25 0.45 1.74 16 16 N -0.85 -50.47 10.93 21.82 0.24 -50.23 16 17 Si 0.98 42.21 29.56 68.60 2.03 44.23 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 21 C -0.12 -6.94 8.16 23.01 0.19 -6.75 16 22 C 0.14 3.37 3.13 44.99 0.14 3.51 16 23 C -0.22 -4.31 8.57 71.98 0.62 -3.70 16 24 C -0.19 -5.05 7.91 71.98 0.57 -4.48 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.13 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.05 1.63 8.03 -2.39 -0.02 1.61 16 32 H 0.22 6.50 0.66 -46.77 -0.03 6.47 16 33 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 34 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 35 H 0.28 15.62 8.30 -92.71 -0.77 14.85 16 36 H 0.09 5.69 6.17 -2.91 -0.02 5.67 16 37 H 0.11 1.87 8.09 -2.39 -0.02 1.85 16 38 H 0.09 2.35 4.14 -3.96 -0.02 2.34 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 2.20 6.64 -2.39 -0.02 2.18 16 43 H 0.05 1.77 4.01 -2.39 -0.01 1.76 16 Total: -1.00 -78.40 336.33 5.72 -72.69 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.98 Total: 32.17 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 5.21 Total: -32.32 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -1.70 Total: -72.77 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.80 Total: -44.00 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -78.40 5.72 -72.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.927 kcal (2) G-P(sol) polarization free energy of solvation -78.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds