Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 H 1.08996 * 109.47270 * 305.00652 * 3 2 1 5 5 C 1.50698 * 109.47154 * 185.00066 * 3 2 1 6 6 H 1.07999 * 120.00159 * 240.00081 * 5 3 2 7 7 C 1.37872 * 120.00059 * 60.00865 * 5 3 2 8 8 N 1.31515 * 120.00159 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99989 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47378 * 90.00016 * 9 7 5 11 11 H 1.48504 * 109.46745 * 209.99643 * 9 7 5 12 12 H 1.48494 * 109.47294 * 329.99472 * 9 7 5 13 13 N 1.46502 * 109.46584 * 65.00395 * 3 2 1 14 14 C 1.34779 * 120.00008 * 274.99863 * 13 3 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 3 16 16 C 1.47849 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.39575 * 120.14487 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85263 * 180.30542 * 17 16 14 19 19 C 1.38362 * 120.14149 * 359.43978 * 18 17 16 20 20 C 1.50708 * 119.85228 * 180.25848 * 19 18 17 21 21 C 1.52995 * 109.46866 * 330.30389 * 20 19 18 22 22 C 1.53004 * 109.46762 * 90.29971 * 20 19 18 23 23 O 1.42898 * 109.47068 * 210.29878 * 20 19 18 24 24 C 1.38356 * 120.29585 * 0.56434 * 19 18 17 25 25 C 1.37959 * 120.14427 * 359.71588 * 24 19 18 26 26 H 1.09005 * 109.47180 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47102 * 299.99203 * 1 2 3 28 28 H 1.09000 * 109.47546 * 59.99743 * 1 2 3 29 29 H 1.09008 * 109.47300 * 240.00705 * 2 1 3 30 30 H 1.08991 * 109.47702 * 120.00879 * 2 1 3 31 31 H 0.96994 * 120.00739 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00414 * 95.00121 * 13 3 2 33 33 H 1.08002 * 120.07104 * 0.02562 * 17 16 14 34 34 H 1.07998 * 119.92975 * 179.72529 * 18 17 16 35 35 H 1.08996 * 109.47620 * 59.99965 * 21 20 19 36 36 H 1.09006 * 109.46834 * 179.97438 * 21 20 19 37 37 H 1.09001 * 109.47146 * 299.99300 * 21 20 19 38 38 H 1.08999 * 109.46847 * 60.00165 * 22 20 19 39 39 H 1.08997 * 109.46910 * 179.97438 * 22 20 19 40 40 H 1.08995 * 109.47227 * 300.00351 * 22 20 19 41 41 H 0.96704 * 114.00126 * 60.00181 * 23 20 19 42 42 H 1.07996 * 119.93336 * 179.74170 * 24 19 18 43 43 H 1.07997 * 120.07494 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3370 -2.1730 9 14 6.0049 0.8803 -1.3812 10 1 6.5538 -0.3518 -0.7601 11 1 6.3834 0.9218 -2.8166 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3414 2.6318 0.4325 16 6 0.0437 3.3246 2.6307 17 6 -1.2164 3.9122 2.7535 18 6 -1.5729 4.5323 3.9332 19 6 -0.6888 4.5624 4.9971 20 6 -1.0873 5.2365 6.2847 21 6 -2.0674 6.3721 5.9837 22 6 -1.7565 4.2167 7.2083 23 8 0.0752 5.7674 6.9241 24 6 0.5618 3.9820 4.8819 25 6 0.9330 3.3637 3.7059 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8292 -0.0614 -2.9497 32 1 2.2719 2.1231 1.9979 33 1 -1.9090 3.8853 1.9253 34 1 -2.5459 4.9912 4.0280 35 1 -2.9541 5.9672 5.4961 36 1 -2.3559 6.8594 6.9151 37 1 -1.5906 7.0987 5.3257 38 1 -1.0583 3.4076 7.4227 39 1 -2.0443 4.7041 8.1398 40 1 -2.6432 3.8117 6.7207 41 1 0.5510 6.4220 6.3946 42 1 1.2488 4.0125 5.7146 43 1 1.9097 2.9113 3.6171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192600730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = -75.687827 kcal Electronic energy + Delta-G solvation = -23212.756887 eV Core-core repulsion = 19836.318856 eV Total energy + Delta-G solvation = -3376.438031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21600 -38.90898 -37.02623 -35.05182 -33.17892 -32.39109 -31.13776 -30.88137 -29.66406 -27.66007 -26.95099 -24.20463 -23.03265 -22.29844 -21.03656 -20.09598 -19.29947 -18.12179 -17.37555 -16.03213 -15.85380 -15.25845 -15.10976 -14.81546 -14.59588 -14.41487 -14.13480 -13.63321 -13.37519 -12.99564 -12.75564 -12.65876 -12.59336 -12.45964 -12.15369 -11.96732 -11.86380 -11.48665 -11.27539 -11.24526 -11.00422 -10.83942 -10.82908 -10.34477 -10.29824 -10.18702 -9.64407 -9.11505 -9.04386 -8.97034 -8.74529 -8.51498 -7.83392 -6.13513 -4.23183 0.94983 1.39747 3.23416 3.26096 3.30646 3.32692 3.91134 4.04262 4.15955 4.33429 4.38248 4.58690 4.77966 4.91279 5.00171 5.17771 5.26751 5.32632 5.39374 5.41711 5.49207 5.56647 5.64749 5.79222 5.87542 5.93261 6.02945 6.34570 6.39211 6.42923 6.46143 6.49721 6.66242 6.89150 7.04557 7.19600 7.35513 7.37025 7.42780 7.60946 7.72287 7.88869 8.16686 8.63808 8.75863 9.09406 9.44159 10.91835 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.003436 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.925617 B = 8147.830811 C = 8817.908728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.539 3.461 15 O -0.545 6.545 16 C -0.117 4.117 17 C -0.067 4.067 18 C -0.123 4.123 19 C -0.108 4.108 20 C 0.169 3.831 21 C -0.178 4.178 22 C -0.135 4.135 23 O -0.556 6.556 24 C -0.112 4.112 25 C -0.089 4.089 26 H 0.023 0.977 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.378 0.622 42 H 0.131 0.869 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 8.852 16.403 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.325 3.675 15 O -0.425 6.425 16 C -0.120 4.120 17 C -0.086 4.086 18 C -0.141 4.141 19 C -0.109 4.109 20 C 0.128 3.872 21 C -0.236 4.236 22 C -0.192 4.192 23 O -0.362 6.362 24 C -0.130 4.130 25 C -0.108 4.108 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.226 0.774 42 H 0.149 0.851 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.152 8.297 15.980 20.198 hybrid contribution 1.507 0.278 -0.292 1.560 sum -7.645 8.575 15.688 19.445 Atomic orbital electron populations 1.21845 0.98343 0.98078 1.01245 1.21938 0.92639 0.99722 1.02331 1.18825 0.94267 0.89225 0.80845 0.93171 1.21224 0.90657 1.39137 1.06345 0.92096 1.24882 0.98634 0.94778 0.95342 1.69890 1.35146 1.37509 1.09358 0.86452 0.84834 0.78455 0.77397 1.20526 1.21059 1.19851 1.46474 1.14368 1.55384 1.18591 1.18191 0.83029 0.79412 0.86874 1.90734 1.51532 1.60195 1.40020 1.20420 0.95522 1.00972 0.95107 1.21286 0.95369 0.94362 0.97545 1.21029 0.99757 1.00548 0.92722 1.20625 0.95025 0.99605 0.95645 1.19999 0.85474 0.92600 0.89115 1.22553 1.00071 0.98497 1.02439 1.21750 1.00374 0.98126 0.98947 1.86536 1.41054 1.61599 1.47019 1.20904 0.96267 0.98060 0.97762 1.21422 0.99204 0.97675 0.92513 0.95813 0.94297 0.93122 0.88207 0.95016 0.92532 0.77922 0.84678 0.85496 0.91055 0.91534 0.91928 0.91622 0.91636 0.90950 0.77386 0.85139 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.70 -14.69 4.97 -55.88 -0.28 -14.97 16 14 C 0.54 10.99 6.34 -12.33 -0.08 10.91 16 15 O -0.54 -12.82 13.48 5.32 0.07 -12.75 16 16 C -0.12 -1.89 5.87 -104.97 -0.62 -2.51 16 17 C -0.07 -0.95 9.60 -39.19 -0.38 -1.33 16 18 C -0.12 -1.39 9.12 -39.64 -0.36 -1.75 16 19 C -0.11 -1.16 4.82 -104.53 -0.50 -1.67 16 20 C 0.17 1.49 1.23 -91.77 -0.11 1.37 16 21 C -0.18 -1.27 8.11 37.16 0.30 -0.97 16 22 C -0.13 -1.13 8.83 37.16 0.33 -0.80 16 23 O -0.56 -5.06 11.95 -35.23 -0.42 -5.48 16 24 C -0.11 -1.30 9.33 -39.64 -0.37 -1.67 16 25 C -0.09 -1.21 9.54 -39.18 -0.37 -1.59 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 29 H 0.10 2.68 5.95 -51.92 -0.31 2.38 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 7.08 6.57 -40.82 -0.27 6.81 16 33 H 0.14 1.97 7.65 -52.49 -0.40 1.57 16 34 H 0.13 1.12 6.14 -52.49 -0.32 0.80 16 35 H 0.07 0.46 6.50 -51.93 -0.34 0.12 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.38 2.40 9.04 45.56 0.41 2.81 16 42 H 0.13 1.34 7.47 -52.49 -0.39 0.95 16 43 H 0.13 1.60 6.41 -52.49 -0.34 1.27 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -30.67 345.40 -7.91 -38.58 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.55 Total: 10.00 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.54 Total: -12.09 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.35 Total: -38.95 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.35 Total: -18.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.67 -7.91 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192600730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.112 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds